Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 PLAUR-214ENST00000601723 1205 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
PRKDCP78527 RPIA-201ENST00000283646 1848 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
PRKDCP78527 RNH1-222ENST00000533410 1829 ntAPPRIS P1 TSL 5 BASIC14.47□□□□□ -0.09
PRKDCP78527 STARD10-218ENST00000543304 1513 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
PRKDCP78527 CREM-210ENST00000374721 2020 ntTSL 5 BASIC14.47□□□□□ -0.09
PRKDCP78527 RBBP7-202ENST00000380084 2036 ntTSL 2 BASIC14.47□□□□□ -0.09
PRKDCP78527 TMEM150B-201ENST00000326652 943 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
PRKDCP78527 FAM19A3-201ENST00000361886 1056 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
PRKDCP78527 LINC00454-206ENST00000609861 841 ntTSL 5 BASIC14.47□□□□□ -0.09
PRKDCP78527 AVL9-209ENST00000640103 1367 ntTSL 5 BASIC14.47□□□□□ -0.09
PRKDCP78527 ETV2-202ENST00000379026 1571 ntAPPRIS ALT2 TSL 2 BASIC14.47□□□□□ -0.09
PRKDCP78527 TMEM185A-207ENST00000600449 2840 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
PRKDCP78527 DISC1-223ENST00000628350 2363 ntAPPRIS ALT2 TSL 1 (best) BASIC14.46□□□□□ -0.09
PRKDCP78527 PDIA6-207ENST00000540494 2509 ntAPPRIS ALT1 TSL 2 BASIC14.46□□□□□ -0.09
PRKDCP78527 GCH1-206ENST00000543643 1897 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
PRKDCP78527 OCIAD2-201ENST00000273860 636 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
PRKDCP78527 PSCA-201ENST00000301258 1020 ntAPPRIS P2 TSL 1 (best) BASIC14.46□□□□□ -0.09
PRKDCP78527 BEX1-201ENST00000372728 864 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
PRKDCP78527 C7orf34-201ENST00000409607 766 ntAPPRIS P2 TSL 1 (best) BASIC14.46□□□□□ -0.09
PRKDCP78527 UBXN1-210ENST00000529640 1110 ntAPPRIS ALT1 TSL 5 BASIC14.46□□□□□ -0.09
PRKDCP78527 SLC25A3P1-206ENST00000569142 925 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
PRKDCP78527 OCIAD2-210ENST00000620187 697 ntTSL 3 BASIC14.46□□□□□ -0.09
PRKDCP78527 SLC19A1-209ENST00000485649 1896 ntAPPRIS ALT2 TSL 2 BASIC14.46□□□□□ -0.09
PRKDCP78527 AC074183.1-201ENST00000439105 782 ntTSL 5 BASIC14.46□□□□□ -0.09
PRKDCP78527 FAAHP1-202ENST00000446499 1238 ntBASIC14.46□□□□□ -0.09
PRKDCP78527 MIXL1-202ENST00000542034 839 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
PRKDCP78527 AC022154.1-201ENST00000600303 766 ntTSL 3 BASIC14.46□□□□□ -0.09
PRKDCP78527 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC14.46□□□□□ -0.09
PRKDCP78527 BIN1-210ENST00000393041 2272 ntTSL 1 (best) BASIC14.46□□□□□ -0.1
PRKDCP78527 NRN1-203ENST00000616243 1556 ntAPPRIS P1 TSL 4 BASIC14.46□□□□□ -0.1
PRKDCP78527 SDR39U1-201ENST00000399395 1233 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
PRKDCP78527 LINC02247-201ENST00000417135 743 ntTSL 3 BASIC14.46□□□□□ -0.1
PRKDCP78527 SLC25A1P1-201ENST00000528351 927 ntBASIC14.46□□□□□ -0.1
PRKDCP78527 BORCS8-206ENST00000585679 801 ntTSL 3 BASIC14.46□□□□□ -0.1
PRKDCP78527 SLF2-205ENST00000609386 891 ntAPPRIS ALT2 BASIC14.46□□□□□ -0.1
PRKDCP78527 AC002310.5-201ENST00000569360 1515 ntAPPRIS P1 TSL 2 BASIC14.46□□□□□ -0.1
PRKDCP78527 ENPP7-201ENST00000328313 2043 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
PRKDCP78527 STOML1-201ENST00000316900 2169 ntTSL 2 BASIC14.45□□□□□ -0.1
PRKDCP78527 MRPL3P1-201ENST00000400109 1033 ntBASIC14.45□□□□□ -0.1
PRKDCP78527 INTS12-206ENST00000451321 1975 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
PRKDCP78527 POMGNT2-201ENST00000344697 2544 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
PRKDCP78527 LY6E-203ENST00000517503 1335 ntAPPRIS ALT2 TSL 3 BASIC14.45□□□□□ -0.1
PRKDCP78527 TEX13A-201ENST00000600991 1377 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
PRKDCP78527 AC004870.1-201ENST00000315132 882 ntBASIC14.45□□□□□ -0.1
PRKDCP78527 AC117500.6-201ENST00000624871 588 ntBASIC14.45□□□□□ -0.1
PRKDCP78527 ADCK2-203ENST00000476491 2092 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
PRKDCP78527 THNSL2-205ENST00000449349 1616 ntTSL 5 BASIC14.45□□□□□ -0.1
PRKDCP78527 PACSIN3-201ENST00000298838 1843 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
PRKDCP78527 ANKRD19P-205ENST00000473204 2370 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
PRKDCP78527 DGCR6L-201ENST00000248879 1154 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
PRKDCP78527 ASH1L-AS1-202ENST00000456633 911 ntTSL 2 BASIC14.45□□□□□ -0.1
PRKDCP78527 GCSHP2-201ENST00000560971 527 ntBASIC14.45□□□□□ -0.1
PRKDCP78527 AC120114.3-201ENST00000611923 658 ntBASIC14.45□□□□□ -0.1
PRKDCP78527 SRSF1-208ENST00000584773 1317 ntTSL 5 BASIC14.45□□□□□ -0.1
PRKDCP78527 ZC3H14-202ENST00000302216 2560 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
PRKDCP78527 ACTR8-202ENST00000482349 2091 ntTSL 2 BASIC14.45□□□□□ -0.1
PRKDCP78527 RNF180-201ENST00000296615 1727 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
PRKDCP78527 LINC01578-209ENST00000557682 2683 ntTSL 2 BASIC14.45□□□□□ -0.1
PRKDCP78527 PTGER3-209ENST00000460330 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
PRKDCP78527 PTBP1P-201ENST00000554374 1601 ntBASIC14.44□□□□□ -0.1
PRKDCP78527 PMS2P1-201ENST00000431037 1228 ntBASIC14.44□□□□□ -0.1
PRKDCP78527 AL591212.1-201ENST00000433646 615 ntTSL 5 BASIC14.44□□□□□ -0.1
PRKDCP78527 ACY1-210ENST00000494103 1298 ntTSL 3 BASIC14.44□□□□□ -0.1
PRKDCP78527 AL512604.3-201ENST00000569583 964 ntBASIC14.44□□□□□ -0.1
PRKDCP78527 EML2-209ENST00000587152 2763 ntAPPRIS ALT2 TSL 2 BASIC14.44□□□□□ -0.1
PRKDCP78527 PINK1-201ENST00000321556 2660 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
PRKDCP78527 PMF1-BGLAP-202ENST00000368276 852 ntTSL 3 BASIC14.44□□□□□ -0.1
PRKDCP78527 MIR574-201ENST00000385209 96 ntBASIC14.44□□□□□ -0.1
PRKDCP78527 SCRN1-203ENST00000409570 535 ntTSL 4 BASIC14.44□□□□□ -0.1
PRKDCP78527 AC007834.1-201ENST00000446473 728 ntTSL 3 BASIC14.44□□□□□ -0.1
PRKDCP78527 AC239803.1-201ENST00000594189 1278 ntTSL 5 BASIC14.44□□□□□ -0.1
PRKDCP78527 SRPK3-204ENST00000370108 1863 ntAPPRIS ALT2 TSL 5 BASIC14.44□□□□□ -0.1
PRKDCP78527 PRSS56-201ENST00000449534 2157 ntAPPRIS ALT2 TSL 5 BASIC14.44□□□□□ -0.1
PRKDCP78527 PRSS56-203ENST00000617714 2158 ntAPPRIS P2 TSL 5 BASIC14.44□□□□□ -0.1
PRKDCP78527 MLF2-202ENST00000435120 1379 ntAPPRIS P1 TSL 2 BASIC14.44□□□□□ -0.1
PRKDCP78527 PPP2R2C-203ENST00000382599 1807 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
PRKDCP78527 EPHX3-204ENST00000602233 1805 ntAPPRIS P1 TSL 5 BASIC14.44□□□□□ -0.1
PRKDCP78527 SOX17-201ENST00000297316 2342 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
PRKDCP78527 EFCAB2-203ENST00000366523 1233 ntAPPRIS P1 TSL 3 BASIC14.43□□□□□ -0.1
PRKDCP78527 AC010655.4-201ENST00000462662 707 ntTSL 4 BASIC14.43□□□□□ -0.1
PRKDCP78527 PALM-207ENST00000590161 2137 ntTSL 4 BASIC14.43□□□□□ -0.1
PRKDCP78527 FEZF1-202ENST00000427185 1368 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
PRKDCP78527 AC090360.1-201ENST00000569722 2218 ntAPPRIS ALT2 TSL 2 BASIC14.43□□□□□ -0.1
PRKDCP78527 HEMK1-206ENST00000455834 1499 ntAPPRIS P1 TSL 5 BASIC14.43□□□□□ -0.1
PRKDCP78527 TMEM176A-210ENST00000484928 1530 ntAPPRIS P2 TSL 5 BASIC14.43□□□□□ -0.1
PRKDCP78527 ID2-201ENST00000234091 2041 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
PRKDCP78527 TMEM88-201ENST00000301599 875 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
PRKDCP78527 INSL3-201ENST00000317306 755 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
PRKDCP78527 AP000523.1-201ENST00000398242 1049 ntBASIC14.43□□□□□ -0.1
PRKDCP78527 COQ10B-203ENST00000409398 879 ntTSL 3 BASIC14.43□□□□□ -0.1
PRKDCP78527 AL645929.1-201ENST00000420084 975 ntBASIC14.43□□□□□ -0.1
PRKDCP78527 FOSL1-203ENST00000531493 1200 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
PRKDCP78527 RPL19-204ENST00000579260 1051 ntAPPRIS ALT1 TSL 2 BASIC14.43□□□□□ -0.1
PRKDCP78527 HEXB-201ENST00000261416 1901 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
PRKDCP78527 ME2-206ENST00000638410 2289 ntTSL 5 BASIC14.43□□□□□ -0.1
PRKDCP78527 ME2-210ENST00000639255 2262 ntTSL 5 BASIC14.43□□□□□ -0.1
PRKDCP78527 CTU2-202ENST00000453996 1751 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
PRKDCP78527 MAMSTR-202ENST00000356751 1825 ntTSL 2 BASIC14.43□□□□□ -0.1
PRKDCP78527 VAMP5-201ENST00000306384 689 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
PRKDCP78527 TRA2B-202ENST00000342294 288 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
Retrieved 100 of 98,524 protein–RNA pairs in 18.8 ms