Protein–RNA interactions for Protein: A0A1B0GU29

SMIM28, Small integral membrane protein 28, humanhuman

Predictions only

Length 152 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMIM28A0A1B0GU29 SAPCD2P4-201ENST00000424595 1171 ntBASIC21.34■■□□□ 1.01
SMIM28A0A1B0GU29 AL390728.5-201ENST00000428687 706 ntTSL 3 BASIC21.34■■□□□ 1.01
SMIM28A0A1B0GU29 AC007161.3-201ENST00000469183 637 ntTSL 5 BASIC21.34■■□□□ 1.01
SMIM28A0A1B0GU29 RARRES1-204ENST00000479756 839 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
SMIM28A0A1B0GU29 EFTUD1P1-201ENST00000558187 596 ntTSL 4 BASIC21.34■■□□□ 1.01
SMIM28A0A1B0GU29 AC005943.1-201ENST00000585937 1002 ntAPPRIS P1 TSL 3 BASIC21.34■■□□□ 1.01
SMIM28A0A1B0GU29 SMAGP-206ENST00000604188 433 ntTSL 3 BASIC21.34■■□□□ 1.01
SMIM28A0A1B0GU29 MTFP1-206ENST00000629597 482 ntTSL 5 BASIC21.34■■□□□ 1.01
SMIM28A0A1B0GU29 TRIB3-201ENST00000217233 2499 ntAPPRIS P3 TSL 1 (best) BASIC21.34■■□□□ 1.01
SMIM28A0A1B0GU29 GPR20-201ENST00000377741 1515 ntAPPRIS P1 TSL 3 BASIC21.34■■□□□ 1.01
SMIM28A0A1B0GU29 CD37-204ENST00000535669 1674 ntTSL 2 BASIC21.34■■□□□ 1.01
SMIM28A0A1B0GU29 TANGO2-217ENST00000456048 2439 ntTSL 2 BASIC21.34■■□□□ 1.01
SMIM28A0A1B0GU29 KRT78-201ENST00000304620 1778 ntAPPRIS P3 TSL 1 (best) BASIC21.33■■□□□ 1.01
SMIM28A0A1B0GU29 KRT83-201ENST00000293670 1875 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
SMIM28A0A1B0GU29 GCSH-201ENST00000315467 1597 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
SMIM28A0A1B0GU29 CCNO-201ENST00000282572 1433 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
SMIM28A0A1B0GU29 EPN1-201ENST00000085079 2355 ntTSL 1 (best) BASIC21.33■■□□□ 1
SMIM28A0A1B0GU29 DCAKD-208ENST00000614054 2054 ntAPPRIS P1 TSL 2 BASIC21.33■■□□□ 1
SMIM28A0A1B0GU29 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
SMIM28A0A1B0GU29 AL162377.1-201ENST00000618844 1793 ntBASIC21.33■■□□□ 1
SMIM28A0A1B0GU29 KXD1-202ENST00000539106 1496 ntAPPRIS P1 TSL 3 BASIC21.32■■□□□ 1
SMIM28A0A1B0GU29 GABARAPL3-202ENST00000624044 1851 ntBASIC21.32■■□□□ 1
SMIM28A0A1B0GU29 GAS2-202ENST00000454584 2286 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
SMIM28A0A1B0GU29 STAU2-229ENST00000524300 3065 ntAPPRIS P4 TSL 2 BASIC21.32■■□□□ 1
SMIM28A0A1B0GU29 GTF3C5-203ENST00000372099 1999 ntTSL 5 BASIC21.32■■□□□ 1
SMIM28A0A1B0GU29 ACBD4-203ENST00000398322 1986 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
SMIM28A0A1B0GU29 ITGA4-202ENST00000339307 1403 ntTSL 1 (best) BASIC21.32■■□□□ 1
SMIM28A0A1B0GU29 MED26-207ENST00000611692 1444 ntTSL 1 (best) BASIC21.32■■□□□ 1
SMIM28A0A1B0GU29 LSM4-203ENST00000593829 1908 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
SMIM28A0A1B0GU29 COL23A1-201ENST00000390654 3061 ntAPPRIS P2 TSL 5 BASIC21.32■■□□□ 1
SMIM28A0A1B0GU29 HAUS1-201ENST00000282058 1125 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
SMIM28A0A1B0GU29 AL353807.1-201ENST00000427475 662 ntBASIC21.32■■□□□ 1
SMIM28A0A1B0GU29 ABCC5-211ENST00000446941 883 ntTSL 1 (best) BASIC21.32■■□□□ 1
SMIM28A0A1B0GU29 LINC01786-202ENST00000453732 389 ntTSL 2 BASIC21.32■■□□□ 1
SMIM28A0A1B0GU29 CBLN3-202ENST00000555436 718 ntTSL 3 BASIC21.32■■□□□ 1
SMIM28A0A1B0GU29 TNNT1-208ENST00000587465 1065 ntAPPRIS ALT2 TSL 5 BASIC21.32■■□□□ 1
SMIM28A0A1B0GU29 PRKACA-209ENST00000590853 1101 ntTSL 5 BASIC21.32■■□□□ 1
SMIM28A0A1B0GU29 JOSD2-202ENST00000595669 733 ntTSL 2 BASIC21.32■■□□□ 1
SMIM28A0A1B0GU29 LRR1-201ENST00000298288 1745 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
SMIM28A0A1B0GU29 TMEM230-207ENST00000379286 1735 ntAPPRIS P1 TSL 2 BASIC21.32■■□□□ 1
SMIM28A0A1B0GU29 TFAP2A-202ENST00000379608 2576 ntAPPRIS ALT1 TSL 1 (best) BASIC21.32■■□□□ 1
SMIM28A0A1B0GU29 RNF32-207ENST00000405335 1938 ntAPPRIS P1 TSL 5 BASIC21.31■■□□□ 1
SMIM28A0A1B0GU29 LINC00482-201ENST00000332012 2023 ntTSL 1 (best) BASIC21.31■■□□□ 1
SMIM28A0A1B0GU29 FBLN5-202ENST00000342058 2123 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
SMIM28A0A1B0GU29 AC092667.1-201ENST00000434301 2586 ntBASIC21.31■■□□□ 1
SMIM28A0A1B0GU29 DNAAF4-201ENST00000321149 1993 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
SMIM28A0A1B0GU29 TSTD1-202ENST00000368023 574 ntAPPRIS ALT2 TSL 2 BASIC21.31■■□□□ 1
SMIM28A0A1B0GU29 BCL7B-206ENST00000455335 985 ntTSL 3 BASIC21.31■■□□□ 1
SMIM28A0A1B0GU29 AC004080.6-201ENST00000467897 919 ntTSL 5 BASIC21.31■■□□□ 1
SMIM28A0A1B0GU29 AC108693.2-201ENST00000492981 303 ntTSL 3 BASIC21.31■■□□□ 1
SMIM28A0A1B0GU29 FDX2-207ENST00000494368 584 ntTSL 4 BASIC21.31■■□□□ 1
SMIM28A0A1B0GU29 PENK-204ENST00000518770 863 ntTSL 2 BASIC21.31■■□□□ 1
SMIM28A0A1B0GU29 ANP32AP1-202ENST00000560832 1074 ntTSL 1 (best) BASIC21.31■■□□□ 1
SMIM28A0A1B0GU29 LINC02167-201ENST00000562769 594 ntTSL 3 BASIC21.31■■□□□ 1
SMIM28A0A1B0GU29 RPS15-203ENST00000586096 570 ntTSL 2 BASIC21.31■■□□□ 1
SMIM28A0A1B0GU29 AC010336.4-201ENST00000595655 438 ntTSL 5 BASIC21.31■■□□□ 1
SMIM28A0A1B0GU29 JAKMIP1-203ENST00000409371 2420 ntTSL 1 (best) BASIC21.31■■□□□ 1
SMIM28A0A1B0GU29 E2F1-201ENST00000343380 2503 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
SMIM28A0A1B0GU29 SLC25A15-201ENST00000338625 1586 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
SMIM28A0A1B0GU29 TBX6-201ENST00000279386 1796 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
SMIM28A0A1B0GU29 TBX6-205ENST00000627355 1796 ntTSL 5 BASIC21.31■■□□□ 1
SMIM28A0A1B0GU29 RBP4-202ENST00000371467 1314 ntAPPRIS P1 TSL 5 BASIC21.3■■□□□ 1
SMIM28A0A1B0GU29 MRPS2-201ENST00000241600 1510 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
SMIM28A0A1B0GU29 PMPCA-201ENST00000371717 2174 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
SMIM28A0A1B0GU29 RNH1-203ENST00000397604 1722 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
SMIM28A0A1B0GU29 RLBP1-201ENST00000268125 1810 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
SMIM28A0A1B0GU29 HYLS1-203ENST00000526028 1803 ntAPPRIS P1 TSL 5 BASIC21.3■■□□□ 1
SMIM28A0A1B0GU29 MANEAL-202ENST00000373045 2685 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
SMIM28A0A1B0GU29 NTAN1-201ENST00000287706 1204 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
SMIM28A0A1B0GU29 RTL8A-201ENST00000370775 1244 ntAPPRIS P1 BASIC21.3■■□□□ 1
SMIM28A0A1B0GU29 HDAC11-205ENST00000404548 577 ntTSL 4 BASIC21.3■■□□□ 1
SMIM28A0A1B0GU29 HEMK1-206ENST00000455834 1499 ntAPPRIS P1 TSL 5 BASIC21.3■■□□□ 1
SMIM28A0A1B0GU29 NTMT1-209ENST00000611055 1562 ntAPPRIS P1 TSL 3 BASIC21.3■■□□□ 1
SMIM28A0A1B0GU29 LINC01558-202ENST00000495520 1652 ntTSL 2 BASIC21.3■■□□□ 1
SMIM28A0A1B0GU29 SYT7-201ENST00000263846 4854 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
SMIM28A0A1B0GU29 MXRA8-201ENST00000309212 2273 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
SMIM28A0A1B0GU29 ARFRP1-214ENST00000622789 2559 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
SMIM28A0A1B0GU29 KRT17P2-201ENST00000300992 1314 ntBASIC21.29■■□□□ 1
SMIM28A0A1B0GU29 RNASEH2C-203ENST00000528220 1337 ntTSL 2 BASIC21.29■■□□□ 1
SMIM28A0A1B0GU29 PNCK-201ENST00000340888 1508 ntAPPRIS P1 TSL 5 BASIC21.29■■□□□ 1
SMIM28A0A1B0GU29 OTUB1-210ENST00000541478 1803 ntTSL 5 BASIC21.29■■□□□ 1
SMIM28A0A1B0GU29 RAB1B-201ENST00000311481 2007 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
SMIM28A0A1B0GU29 C17orf67-201ENST00000397861 2013 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
SMIM28A0A1B0GU29 TMEM8A-201ENST00000250930 2346 ntAPPRIS ALT2 TSL 2 BASIC21.29■■□□□ 1
SMIM28A0A1B0GU29 ANKS6-201ENST00000353234 7164 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
SMIM28A0A1B0GU29 KIAA1456-201ENST00000400069 1982 ntTSL 2 BASIC21.29■■□□□ 1
SMIM28A0A1B0GU29 RHNO1-204ENST00000489288 1870 ntAPPRIS P3 TSL 1 (best) BASIC21.29■■□□□ 1
SMIM28A0A1B0GU29 LINC02361-201ENST00000538731 1484 ntTSL 2 BASIC21.29■■□□□ 1
SMIM28A0A1B0GU29 FAM3A-203ENST00000369641 1359 ntTSL 5 BASIC21.29■■□□□ 1
SMIM28A0A1B0GU29 TSPY8-201ENST00000287721 1161 ntAPPRIS P5 TSL 1 (best) BASIC21.29■■□□□ 1
SMIM28A0A1B0GU29 GDAP1L1-202ENST00000372952 722 ntTSL 5 BASIC21.29■■□□□ 1
SMIM28A0A1B0GU29 USF2-203ENST00000379134 648 ntTSL 1 (best) BASIC21.29■■□□□ 1
SMIM28A0A1B0GU29 ELF3-AS1-202ENST00000419190 788 ntTSL 2 BASIC21.29■■□□□ 1
SMIM28A0A1B0GU29 TSPY10-201ENST00000428845 1161 ntAPPRIS P5 TSL 1 (best) BASIC21.29■■□□□ 1
SMIM28A0A1B0GU29 LTB-210ENST00000429299 897 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
SMIM28A0A1B0GU29 TSPY3-203ENST00000457222 1161 ntAPPRIS P5 TSL 1 (best) BASIC21.29■■□□□ 1
SMIM28A0A1B0GU29 ARL16-209ENST00000573715 763 ntTSL 3 BASIC21.29■■□□□ 1
SMIM28A0A1B0GU29 ARL16-211ENST00000576135 694 ntTSL 3 BASIC21.29■■□□□ 1
SMIM28A0A1B0GU29 MIEF2-207ENST00000578621 540 ntTSL 4 BASIC21.29■■□□□ 1
SMIM28A0A1B0GU29 AL353708.3-201ENST00000610272 989 ntBASIC21.29■■□□□ 1
Retrieved 100 of 98,524 protein–RNA pairs in 34.6 ms