Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 OR5AS1-202ENST00000641320 7860 ntAPPRIS P1 BASIC5.76□□□□□ -1.49
NKX3-1Q99801 PSG2-202ENST00000406487 1538 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
NKX3-1Q99801 KAT14-201ENST00000377681 3483 ntAPPRIS ALT1 TSL 5 BASIC5.76□□□□□ -1.49
NKX3-1Q99801 NDUFS1-205ENST00000449699 2371 ntAPPRIS P1 TSL 2 BASIC5.76□□□□□ -1.49
NKX3-1Q99801 ALKBH8-205ENST00000428149 4079 ntAPPRIS P3 TSL 1 (best) BASIC5.76□□□□□ -1.49
NKX3-1Q99801 TAS2R42-201ENST00000334266 945 ntAPPRIS P1 BASIC5.76□□□□□ -1.49
NKX3-1Q99801 FUNDC2P3-201ENST00000334716 533 ntBASIC5.76□□□□□ -1.49
NKX3-1Q99801 ENSA-207ENST00000362052 703 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
NKX3-1Q99801 RNU12-2P-201ENST00000364789 156 ntBASIC5.76□□□□□ -1.49
NKX3-1Q99801 NOX1-203ENST00000372964 661 ntTSL 2 BASIC5.76□□□□□ -1.49
NKX3-1Q99801 IGKV3-7-201ENST00000390247 445 ntAPPRIS P1 BASIC5.76□□□□□ -1.49
NKX3-1Q99801 RNU4-64P-201ENST00000410795 131 ntBASIC5.76□□□□□ -1.49
NKX3-1Q99801 AC096537.2-201ENST00000413707 714 ntBASIC5.76□□□□□ -1.49
NKX3-1Q99801 CCR8-202ENST00000414803 1078 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
NKX3-1Q99801 RPL6-202ENST00000424576 1074 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
NKX3-1Q99801 AC245452.2-201ENST00000435222 392 ntBASIC5.76□□□□□ -1.49
NKX3-1Q99801 AL606804.1-201ENST00000435333 538 ntTSL 3 BASIC5.76□□□□□ -1.49
NKX3-1Q99801 AC068888.2-201ENST00000435621 536 ntTSL 3 BASIC5.76□□□□□ -1.49
NKX3-1Q99801 AP001048.1-201ENST00000436359 280 ntTSL 2 BASIC5.76□□□□□ -1.49
NKX3-1Q99801 TRGC2-201ENST00000436911 1013 ntAPPRIS P1 BASIC5.76□□□□□ -1.49
NKX3-1Q99801 AC027124.1-201ENST00000440852 466 ntBASIC5.76□□□□□ -1.49
NKX3-1Q99801 AL157385.1-201ENST00000446973 268 ntBASIC5.76□□□□□ -1.49
NKX3-1Q99801 DPP10-AS1-202ENST00000448663 644 ntTSL 3 BASIC5.76□□□□□ -1.49
NKX3-1Q99801 GOT2P2-201ENST00000450663 1251 ntBASIC5.76□□□□□ -1.49
NKX3-1Q99801 AC013727.1-202ENST00000455716 580 ntTSL 4 BASIC5.76□□□□□ -1.49
NKX3-1Q99801 RBMY2EP-202ENST00000456360 940 ntBASIC5.76□□□□□ -1.49
NKX3-1Q99801 AC079193.1-201ENST00000460497 588 ntBASIC5.76□□□□□ -1.49
NKX3-1Q99801 RPL5P16-201ENST00000471467 790 ntBASIC5.76□□□□□ -1.49
NKX3-1Q99801 SNHG12-207ENST00000475441 444 ntTSL 3 BASIC5.76□□□□□ -1.49
NKX3-1Q99801 RPL23AP68-201ENST00000480924 445 ntBASIC5.76□□□□□ -1.49
NKX3-1Q99801 ZNF525-204ENST00000491101 569 ntTSL 4 BASIC5.76□□□□□ -1.49
NKX3-1Q99801 AC010655.2-201ENST00000493710 662 ntTSL 3 BASIC5.76□□□□□ -1.49
NKX3-1Q99801 ZNF138-207ENST00000494380 842 ntTSL 2 BASIC5.76□□□□□ -1.49
NKX3-1Q99801 AC005699.1-204ENST00000509244 747 ntTSL 5 BASIC5.76□□□□□ -1.49
NKX3-1Q99801 RN7SKP11-201ENST00000517018 287 ntBASIC5.76□□□□□ -1.49
NKX3-1Q99801 AC073581.1-201ENST00000519036 575 ntBASIC5.76□□□□□ -1.49
NKX3-1Q99801 AC008676.3-201ENST00000521237 435 ntBASIC5.76□□□□□ -1.49
NKX3-1Q99801 AC107952.1-201ENST00000524200 376 ntBASIC5.76□□□□□ -1.49
NKX3-1Q99801 OR5AP2-201ENST00000544374 1006 ntAPPRIS P1 BASIC5.76□□□□□ -1.49
NKX3-1Q99801 AC073896.2-202ENST00000549860 437 ntTSL 2 BASIC5.76□□□□□ -1.49
NKX3-1Q99801 AC021979.2-201ENST00000553644 209 ntTSL 5 BASIC5.76□□□□□ -1.49
NKX3-1Q99801 AC022558.1-201ENST00000560450 454 ntTSL 3 BASIC5.76□□□□□ -1.49
NKX3-1Q99801 RN7SL199P-201ENST00000578752 281 ntBASIC5.76□□□□□ -1.49
NKX3-1Q99801 RN7SL656P-201ENST00000579044 281 ntBASIC5.76□□□□□ -1.49
NKX3-1Q99801 RN7SL404P-201ENST00000582421 281 ntBASIC5.76□□□□□ -1.49
NKX3-1Q99801 OR7E19P-202ENST00000589942 844 ntBASIC5.76□□□□□ -1.49
NKX3-1Q99801 AC092960.1-201ENST00000604762 351 ntBASIC5.76□□□□□ -1.49
NKX3-1Q99801 AL356056.3-201ENST00000605984 551 ntTSL 3 BASIC5.76□□□□□ -1.49
NKX3-1Q99801 AC092902.3-201ENST00000610060 373 ntTSL 3 BASIC5.76□□□□□ -1.49
NKX3-1Q99801 AL121782.1-201ENST00000611242 413 ntBASIC5.76□□□□□ -1.49
NKX3-1Q99801 PTCHD3P1-201ENST00000612350 537 ntBASIC5.76□□□□□ -1.49
NKX3-1Q99801 AC012629.3-201ENST00000623397 328 ntBASIC5.76□□□□□ -1.49
NKX3-1Q99801 MPDZ-219ENST00000546205 6342 ntAPPRIS ALT2 TSL 5 BASIC5.76□□□□□ -1.49
NKX3-1Q99801 CCDC150P1-201ENST00000537123 2215 ntBASIC5.76□□□□□ -1.49
NKX3-1Q99801 LINC01606-203ENST00000519160 2292 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
NKX3-1Q99801 SLC2A14-218ENST00000543909 4125 ntAPPRIS P3 TSL 1 (best) BASIC5.76□□□□□ -1.49
NKX3-1Q99801 AC011504.1-201ENST00000623331 4103 ntBASIC5.76□□□□□ -1.49
NKX3-1Q99801 POLR1D-218ENST00000636817 4592 ntTSL 5 BASIC5.75□□□□□ -1.49
NKX3-1Q99801 SEL1L3-203ENST00000502949 3500 ntTSL 2 BASIC5.75□□□□□ -1.49
NKX3-1Q99801 DAZ2-204ENST00000382431 3637 ntAPPRIS ALT2 TSL 1 (best) BASIC5.75□□□□□ -1.49
NKX3-1Q99801 ZNF211-205ENST00000391703 2239 ntTSL 2 BASIC5.75□□□□□ -1.49
NKX3-1Q99801 NPIPB15-201ENST00000429990 1428 ntAPPRIS P1 TSL 5 BASIC5.75□□□□□ -1.49
NKX3-1Q99801 EEF1A1P28-201ENST00000450915 1403 ntBASIC5.75□□□□□ -1.49
NKX3-1Q99801 ANO4-202ENST00000392979 3909 ntAPPRIS P3 TSL 2 BASIC5.75□□□□□ -1.49
NKX3-1Q99801 USP16-203ENST00000399975 2960 ntAPPRIS ALT1 TSL 1 (best) BASIC5.75□□□□□ -1.49
NKX3-1Q99801 LINC01415-201ENST00000587320 4071 ntTSL 2 BASIC5.75□□□□□ -1.49
NKX3-1Q99801 ARHGEF3-214ENST00000497267 2197 ntTSL 2 BASIC5.75□□□□□ -1.49
NKX3-1Q99801 LINC02183-201ENST00000637822 1732 ntTSL 5 BASIC5.75□□□□□ -1.49
NKX3-1Q99801 ZNF292-201ENST00000339907 8287 ntAPPRIS ALT1 TSL 5 BASIC5.75□□□□□ -1.49
NKX3-1Q99801 RNA5SP53-201ENST00000391299 120 ntBASIC5.75□□□□□ -1.49
NKX3-1Q99801 AL136100.1-201ENST00000407696 330 ntBASIC5.75□□□□□ -1.49
NKX3-1Q99801 RNA5SP280-201ENST00000411230 115 ntBASIC5.75□□□□□ -1.49
NKX3-1Q99801 AL157932.1-201ENST00000413246 363 ntTSL 3 BASIC5.75□□□□□ -1.49
NKX3-1Q99801 MTND4LP17-201ENST00000414607 293 ntBASIC5.75□□□□□ -1.49
NKX3-1Q99801 AL139415.1-201ENST00000424862 352 ntBASIC5.75□□□□□ -1.49
NKX3-1Q99801 AC007179.2-206ENST00000434611 467 ntTSL 3 BASIC5.75□□□□□ -1.49
NKX3-1Q99801 FGF13-AS1-201ENST00000438238 849 ntTSL 1 (best) BASIC5.75□□□□□ -1.49
NKX3-1Q99801 CCDC13-AS1-202ENST00000446950 554 ntTSL 4 BASIC5.75□□□□□ -1.49
NKX3-1Q99801 SCDP1-201ENST00000455244 1081 ntBASIC5.75□□□□□ -1.49
NKX3-1Q99801 STARD13-IT1-201ENST00000456087 452 ntTSL 5 BASIC5.75□□□□□ -1.49
NKX3-1Q99801 BX323845.2-201ENST00000458382 234 ntBASIC5.75□□□□□ -1.49
NKX3-1Q99801 AC115223.1-201ENST00000466377 870 ntBASIC5.75□□□□□ -1.49
NKX3-1Q99801 AL079303.1-201ENST00000486611 463 ntBASIC5.75□□□□□ -1.49
NKX3-1Q99801 FTH1P8-201ENST00000498161 514 ntBASIC5.75□□□□□ -1.49
NKX3-1Q99801 AC122714.1-201ENST00000502510 459 ntBASIC5.75□□□□□ -1.49
NKX3-1Q99801 AC008906.1-201ENST00000512856 993 ntTSL 5 BASIC5.75□□□□□ -1.49
NKX3-1Q99801 IGHVIII-11-1-201ENST00000522733 267 ntBASIC5.75□□□□□ -1.49
NKX3-1Q99801 GLYAT-203ENST00000529732 1070 ntAPPRIS P1 TSL 5 BASIC5.75□□□□□ -1.49
NKX3-1Q99801 NQO1-205ENST00000561500 891 ntTSL 3 BASIC5.75□□□□□ -1.49
NKX3-1Q99801 AC021549.1-201ENST00000580937 433 ntTSL 3 BASIC5.75□□□□□ -1.49
NKX3-1Q99801 AC010531.5-201ENST00000602779 450 ntTSL 3 BASIC5.75□□□□□ -1.49
NKX3-1Q99801 AL683813.2-201ENST00000605245 502 ntBASIC5.75□□□□□ -1.49
NKX3-1Q99801 AC005393.1-201ENST00000617916 584 ntBASIC5.75□□□□□ -1.49
NKX3-1Q99801 AC073857.1-201ENST00000625082 1054 ntBASIC5.75□□□□□ -1.49
NKX3-1Q99801 ENKUR-201ENST00000331161 3382 ntAPPRIS P2 TSL 1 (best) BASIC5.75□□□□□ -1.49
NKX3-1Q99801 AGXT2-201ENST00000231420 2364 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
NKX3-1Q99801 AC005332.9-201ENST00000620266 2921 ntBASIC5.75□□□□□ -1.49
NKX3-1Q99801 AC093844.1-201ENST00000514910 1361 ntBASIC5.75□□□□□ -1.49
NKX3-1Q99801 MAGEB10-202ENST00000614159 1389 ntAPPRIS P1 BASIC5.75□□□□□ -1.49
NKX3-1Q99801 MEIOC-202ENST00000409464 4067 ntAPPRIS ALT2 TSL 2 BASIC5.75□□□□□ -1.49
Retrieved 100 of 98,524 protein–RNA pairs in 122.4 ms