Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 H3F3AP5-201ENST00000475267 429 ntBASIC2.03□□□□□ -2.08
SYNE1Q8NF91 RNA5SP206-201ENST00000516703 121 ntBASIC2.03□□□□□ -2.08
SYNE1Q8NF91 AC021820.1-201ENST00000525564 808 ntBASIC2.03□□□□□ -2.08
SYNE1Q8NF91 AC010768.4-201ENST00000528183 520 ntTSL 3 BASIC2.03□□□□□ -2.08
SYNE1Q8NF91 SNRPCP6-201ENST00000528310 210 ntBASIC2.03□□□□□ -2.08
SYNE1Q8NF91 AC079315.1-201ENST00000602952 623 ntBASIC2.03□□□□□ -2.08
SYNE1Q8NF91 AL353572.3-201ENST00000636536 670 ntAPPRIS P1 BASIC2.03□□□□□ -2.08
SYNE1Q8NF91 KPNA6-201ENST00000373625 7378 ntAPPRIS P1 TSL 1 (best) BASIC2.03□□□□□ -2.08
SYNE1Q8NF91 AC004690.2-201ENST00000472838 1754 ntTSL 1 (best) BASIC2.03□□□□□ -2.08
SYNE1Q8NF91 NIPA1-202ENST00000437912 7613 ntAPPRIS ALT2 TSL 1 (best) BASIC2.03□□□□□ -2.08
SYNE1Q8NF91 AL157831.2-201ENST00000564681 3095 ntBASIC2.03□□□□□ -2.08
SYNE1Q8NF91 LRAT-206ENST00000507827 2654 ntAPPRIS P1 TSL 1 (best) BASIC2.03□□□□□ -2.09
SYNE1Q8NF91 BMS1-201ENST00000374518 7753 ntAPPRIS P1 TSL 1 (best) BASIC2.03□□□□□ -2.09
SYNE1Q8NF91 AL021877.2-201ENST00000624442 10684 ntBASIC2.03□□□□□ -2.09
SYNE1Q8NF91 RAD51B-210ENST00000487270 2596 ntTSL 1 (best) BASIC2.03□□□□□ -2.09
SYNE1Q8NF91 CDK15-201ENST00000260967 1635 ntAPPRIS P3 TSL 1 (best) BASIC2.03□□□□□ -2.09
SYNE1Q8NF91 GLYATL1P1-201ENST00000528297 1607 ntBASIC2.03□□□□□ -2.09
SYNE1Q8NF91 AC009948.3-201ENST00000603415 1798 ntBASIC2.03□□□□□ -2.09
SYNE1Q8NF91 CNTNAP4-205ENST00000476707 4355 ntTSL 2 BASIC2.03□□□□□ -2.09
SYNE1Q8NF91 KLHL13-206ENST00000469946 2353 ntTSL 2 BASIC2.03□□□□□ -2.09
SYNE1Q8NF91 HYDIN-201ENST00000288168 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC2.03□□□□□ -2.09
SYNE1Q8NF91 FAM162A-201ENST00000232125 801 ntTSL 2 BASIC2.03□□□□□ -2.09
SYNE1Q8NF91 OR4N2-201ENST00000315947 924 ntAPPRIS P1 BASIC2.03□□□□□ -2.09
SYNE1Q8NF91 AKAP5-201ENST00000320636 2601 ntAPPRIS P1 BASIC2.03□□□□□ -2.09
SYNE1Q8NF91 RPL5P6-201ENST00000425640 886 ntBASIC2.03□□□□□ -2.09
SYNE1Q8NF91 SPANXB1-201ENST00000449283 469 ntAPPRIS P1 TSL 1 (best) BASIC2.03□□□□□ -2.09
SYNE1Q8NF91 AP005202.1-201ENST00000489915 867 ntBASIC2.03□□□□□ -2.09
SYNE1Q8NF91 APAF1-211ENST00000552268 1143 ntTSL 1 (best) BASIC2.03□□□□□ -2.09
SYNE1Q8NF91 AC068722.1-202ENST00000559600 655 ntTSL 3 BASIC2.03□□□□□ -2.09
SYNE1Q8NF91 AC009097.1-201ENST00000567077 406 ntTSL 3 BASIC2.03□□□□□ -2.09
SYNE1Q8NF91 AC092070.2-201ENST00000597550 545 ntTSL 4 BASIC2.03□□□□□ -2.09
SYNE1Q8NF91 AL513548.2-201ENST00000602994 1207 ntBASIC2.03□□□□□ -2.09
SYNE1Q8NF91 AL353626.1-201ENST00000613429 507 ntTSL 5 BASIC2.03□□□□□ -2.09
SYNE1Q8NF91 AC022400.9-201ENST00000623633 273 ntBASIC2.03□□□□□ -2.09
SYNE1Q8NF91 ZNF385B-202ENST00000409343 2750 ntTSL 2 BASIC2.02□□□□□ -2.09
SYNE1Q8NF91 CHST9-203ENST00000618847 11388 ntAPPRIS P1 TSL 1 (best) BASIC2.02□□□□□ -2.09
SYNE1Q8NF91 TNPO1-204ENST00000506351 3028 ntAPPRIS P1 TSL 1 (best) BASIC2.02□□□□□ -2.09
SYNE1Q8NF91 MDM4-205ENST00000391947 10008 ntTSL 1 (best) BASIC2.02□□□□□ -2.09
SYNE1Q8NF91 AC016907.2-203ENST00000455424 3563 ntTSL 3 BASIC2.02□□□□□ -2.09
SYNE1Q8NF91 ZNF253-201ENST00000355650 2268 ntTSL 1 (best) BASIC2.02□□□□□ -2.09
SYNE1Q8NF91 GSTM2-207ENST00000460717 1449 ntTSL 2 BASIC2.02□□□□□ -2.09
SYNE1Q8NF91 ADAMTS9-AS2-202ENST00000474768 2388 ntTSL 2 BASIC2.02□□□□□ -2.09
SYNE1Q8NF91 SNORA51.9-201ENST00000384295 124 ntBASIC2.02□□□□□ -2.09
SYNE1Q8NF91 AC233728.1-201ENST00000418049 218 ntTSL 5 BASIC2.02□□□□□ -2.09
SYNE1Q8NF91 LINC01393-202ENST00000435981 1187 ntTSL 1 (best) BASIC2.02□□□□□ -2.09
SYNE1Q8NF91 MIR4432HG-201ENST00000441598 470 ntTSL 3 BASIC2.02□□□□□ -2.09
SYNE1Q8NF91 RPS7P10-201ENST00000464254 603 ntBASIC2.02□□□□□ -2.09
SYNE1Q8NF91 AC093895.1-201ENST00000506480 821 ntTSL 3 BASIC2.02□□□□□ -2.09
SYNE1Q8NF91 AC122688.2-201ENST00000543922 585 ntTSL 3 BASIC2.02□□□□□ -2.09
SYNE1Q8NF91 AC007601.2-201ENST00000566957 502 ntTSL 3 BASIC2.02□□□□□ -2.09
SYNE1Q8NF91 RPS7P1-201ENST00000571702 585 ntBASIC2.02□□□□□ -2.09
SYNE1Q8NF91 AC129507.1-204ENST00000573601 503 ntTSL 1 (best) BASIC2.02□□□□□ -2.09
SYNE1Q8NF91 U1.41-201ENST00000617626 165 ntBASIC2.02□□□□□ -2.09
SYNE1Q8NF91 AC131009.3-201ENST00000621809 287 ntBASIC2.02□□□□□ -2.09
SYNE1Q8NF91 POU2F2-219ENST00000625670 371 ntTSL 5 BASIC2.02□□□□□ -2.09
SYNE1Q8NF91 LEO1-201ENST00000299601 2193 ntAPPRIS P1 TSL 1 (best) BASIC2.02□□□□□ -2.09
SYNE1Q8NF91 RAD23B-202ENST00000416373 3835 ntTSL 1 (best) BASIC2.02□□□□□ -2.09
SYNE1Q8NF91 ATP13A4-204ENST00000400270 1458 ntTSL 1 (best) BASIC2.02□□□□□ -2.09
SYNE1Q8NF91 ZNF737-201ENST00000427401 2867 ntAPPRIS P1 TSL 2 BASIC2.02□□□□□ -2.09
SYNE1Q8NF91 MED6-212ENST00000615788 1700 ntTSL 5 BASIC2.02□□□□□ -2.09
SYNE1Q8NF91 AC011504.1-201ENST00000623331 4103 ntBASIC2.02□□□□□ -2.09
SYNE1Q8NF91 ADTRP-203ENST00000414691 2058 ntAPPRIS P1 TSL 1 (best) BASIC2.02□□□□□ -2.09
SYNE1Q8NF91 DDX4-202ENST00000354991 2324 ntTSL 5 BASIC2.02□□□□□ -2.09
SYNE1Q8NF91 CLCC1-205ENST00000369969 4343 ntTSL 5 BASIC2.02□□□□□ -2.09
SYNE1Q8NF91 INTS2-207ENST00000617492 5805 ntTSL 5 BASIC2.02□□□□□ -2.09
SYNE1Q8NF91 AL035530.2-201ENST00000607391 1675 ntTSL 3 BASIC2.02□□□□□ -2.09
SYNE1Q8NF91 OXCT1-204ENST00000509987 1441 ntTSL 2 BASIC2.02□□□□□ -2.09
SYNE1Q8NF91 PYROXD1-205ENST00000538582 3639 ntTSL 2 BASIC2.02□□□□□ -2.09
SYNE1Q8NF91 RN7SKP69-201ENST00000365390 305 ntBASIC2.02□□□□□ -2.09
SYNE1Q8NF91 MIR937-201ENST00000401271 86 ntBASIC2.02□□□□□ -2.09
SYNE1Q8NF91 DCN-203ENST00000420120 753 ntTSL 1 (best) BASIC2.02□□□□□ -2.09
SYNE1Q8NF91 DCN-205ENST00000441303 519 ntTSL 1 (best) BASIC2.02□□□□□ -2.09
SYNE1Q8NF91 AC026391.1-201ENST00000450677 537 ntTSL 3 BASIC2.02□□□□□ -2.09
SYNE1Q8NF91 AL359265.3-201ENST00000456125 579 ntTSL 5 BASIC2.02□□□□□ -2.09
SYNE1Q8NF91 DCN-206ENST00000456569 228 ntTSL 1 (best) BASIC2.02□□□□□ -2.09
SYNE1Q8NF91 IGKV1OR22-1-201ENST00000521497 360 ntBASIC2.02□□□□□ -2.09
SYNE1Q8NF91 OPCML-IT2-201ENST00000533260 398 ntTSL 4 BASIC2.02□□□□□ -2.09
SYNE1Q8NF91 ZNF675-208ENST00000601010 669 ntTSL 5 BASIC2.02□□□□□ -2.09
SYNE1Q8NF91 CNTNAP3P1-201ENST00000616657 906 ntBASIC2.02□□□□□ -2.09
SYNE1Q8NF91 AP001962.1-201ENST00000624114 559 ntBASIC2.02□□□□□ -2.09
SYNE1Q8NF91 LINC01108-202ENST00000635227 776 ntTSL 3 BASIC2.02□□□□□ -2.09
SYNE1Q8NF91 PROX1-AS1-202ENST00000433082 5266 ntTSL 5 BASIC2.02□□□□□ -2.09
SYNE1Q8NF91 TTTY2-201ENST00000417072 3168 ntTSL 1 (best) BASIC2.02□□□□□ -2.09
SYNE1Q8NF91 TTTY2B-201ENST00000450591 3168 ntTSL 1 (best) BASIC2.02□□□□□ -2.09
SYNE1Q8NF91 BVES-AS1-202ENST00000369122 1716 ntTSL 1 (best) BASIC2.02□□□□□ -2.09
SYNE1Q8NF91 FZD6-205ENST00000522566 3719 ntAPPRIS P1 TSL 1 (best) BASIC2.02□□□□□ -2.09
SYNE1Q8NF91 ZNF208-201ENST00000397126 3992 ntAPPRIS P1 TSL 3 BASIC2.02□□□□□ -2.09
SYNE1Q8NF91 FCRL5-202ENST00000368189 4424 ntTSL 1 (best) BASIC2.02□□□□□ -2.09
SYNE1Q8NF91 KARSP1-201ENST00000451871 1752 ntBASIC2.02□□□□□ -2.09
SYNE1Q8NF91 OR10A6-204ENST00000642108 6104 ntAPPRIS P1 BASIC2.02□□□□□ -2.09
SYNE1Q8NF91 RUNX1T1-205ENST00000436581 7454 ntTSL 5 BASIC2.02□□□□□ -2.09
SYNE1Q8NF91 AL133243.2-201ENST00000610331 1621 ntBASIC2.02□□□□□ -2.09
SYNE1Q8NF91 PRPS1-202ENST00000372419 628 ntTSL 2 BASIC2.02□□□□□ -2.09
SYNE1Q8NF91 IGLV3-10-201ENST00000390315 382 ntAPPRIS P1 BASIC2.02□□□□□ -2.09
SYNE1Q8NF91 RN7SKP240-201ENST00000410583 375 ntBASIC2.02□□□□□ -2.09
SYNE1Q8NF91 LINC01638-201ENST00000418271 552 ntTSL 3 BASIC2.02□□□□□ -2.09
SYNE1Q8NF91 AL512363.1-201ENST00000425089 586 ntTSL 2 BASIC2.02□□□□□ -2.09
SYNE1Q8NF91 NIPA2P1-201ENST00000426223 976 ntBASIC2.02□□□□□ -2.09
SYNE1Q8NF91 AL392046.1-201ENST00000450742 569 ntTSL 5 BASIC2.02□□□□□ -2.09
SYNE1Q8NF91 AC097494.1-201ENST00000512898 732 ntTSL 3 BASIC2.02□□□□□ -2.09
Retrieved 100 of 98,524 protein–RNA pairs in 63.9 ms