Protein–RNA interactions for Protein: Q9BQ65

USB1, U6 snRNA phosphodiesterase, humanhuman

Known RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USB1Q9BQ65 RPS20P20-201ENST00000460498 340 ntBASIC8.08□□□□□ -1.12
USB1Q9BQ65 C3orf67-AS1-201ENST00000463703 562 ntTSL 4 BASIC8.08□□□□□ -1.12
USB1Q9BQ65 AC020658.1-201ENST00000471253 938 ntBASIC8.08□□□□□ -1.12
USB1Q9BQ65 AC099520.1-202ENST00000503650 777 ntTSL 3 BASIC8.08□□□□□ -1.12
USB1Q9BQ65 KCTD9P5-201ENST00000504141 1170 ntBASIC8.08□□□□□ -1.12
USB1Q9BQ65 OCIAD1-210ENST00000506801 571 ntTSL 2 BASIC8.08□□□□□ -1.12
USB1Q9BQ65 AC097460.1-201ENST00000514624 590 ntTSL 3 BASIC8.08□□□□□ -1.12
USB1Q9BQ65 AC022034.4-201ENST00000521930 469 ntTSL 3 BASIC8.08□□□□□ -1.12
USB1Q9BQ65 ZNF726-203ENST00000525354 806 ntTSL 2 BASIC8.08□□□□□ -1.12
USB1Q9BQ65 AC023511.1-201ENST00000549055 571 ntTSL 3 BASIC8.08□□□□□ -1.12
USB1Q9BQ65 AC011611.1-201ENST00000552179 197 ntBASIC8.08□□□□□ -1.12
USB1Q9BQ65 PCED1B-AS1-209ENST00000552269 673 ntTSL 2 BASIC8.08□□□□□ -1.12
USB1Q9BQ65 RGS6-215ENST00000554782 1110 ntTSL 1 (best) BASIC8.08□□□□□ -1.12
USB1Q9BQ65 AL137779.1-201ENST00000556205 599 ntTSL 3 BASIC8.08□□□□□ -1.12
USB1Q9BQ65 WDR61-205ENST00000558459 884 ntTSL 3 BASIC8.08□□□□□ -1.12
USB1Q9BQ65 AC021739.4-201ENST00000561417 569 ntTSL 4 BASIC8.08□□□□□ -1.12
USB1Q9BQ65 ANKFN1-202ENST00000566473 3840 ntAPPRIS ALT2 TSL 5 BASIC8.08□□□□□ -1.12
USB1Q9BQ65 LINC02124-201ENST00000570087 484 ntTSL 2 BASIC8.08□□□□□ -1.12
USB1Q9BQ65 AC136618.2-201ENST00000575091 400 ntBASIC8.08□□□□□ -1.12
USB1Q9BQ65 AP001496.2-202ENST00000579933 977 ntTSL 5 BASIC8.08□□□□□ -1.12
USB1Q9BQ65 AC018521.3-201ENST00000581213 816 ntTSL 1 (best) BASIC8.08□□□□□ -1.12
USB1Q9BQ65 AC013290.1-201ENST00000586960 537 ntBASIC8.08□□□□□ -1.12
USB1Q9BQ65 AL596327.1-201ENST00000603629 213 ntBASIC8.08□□□□□ -1.12
USB1Q9BQ65 RNU6-88P-201ENST00000606801 100 ntBASIC8.08□□□□□ -1.12
USB1Q9BQ65 AC009237.16-201ENST00000612987 506 ntBASIC8.08□□□□□ -1.12
USB1Q9BQ65 YARS-210ENST00000616261 1167 ntTSL 5 BASIC8.08□□□□□ -1.12
USB1Q9BQ65 CU633904.1-204ENST00000624907 777 ntTSL 3 BASIC8.08□□□□□ -1.12
USB1Q9BQ65 CCDC163-207ENST00000629482 953 ntAPPRIS P5 TSL 1 (best) BASIC8.08□□□□□ -1.12
USB1Q9BQ65 OR10H3-202ENST00000641646 1029 ntAPPRIS P1 BASIC8.08□□□□□ -1.12
USB1Q9BQ65 JAKMIP2-201ENST00000265272 6001 ntAPPRIS P3 TSL 1 (best) BASIC8.08□□□□□ -1.12
USB1Q9BQ65 AMPD1-201ENST00000369538 2392 ntAPPRIS ALT2 TSL 2 BASIC8.08□□□□□ -1.12
USB1Q9BQ65 TRHR-201ENST00000311762 1415 ntAPPRIS P1 TSL 1 (best) BASIC8.08□□□□□ -1.12
USB1Q9BQ65 AL157895.1-201ENST00000451713 1404 ntTSL 1 (best) BASIC8.08□□□□□ -1.12
USB1Q9BQ65 AC020549.1-201ENST00000536916 1440 ntBASIC8.08□□□□□ -1.12
USB1Q9BQ65 PSMC6-219ENST00000612399 1590 ntAPPRIS P2 TSL 1 (best) BASIC8.08□□□□□ -1.12
USB1Q9BQ65 ASTE1-201ENST00000264992 2664 ntAPPRIS P1 TSL 1 (best) BASIC8.08□□□□□ -1.12
USB1Q9BQ65 ATF7IP-221ENST00000543189 4887 ntAPPRIS ALT2 TSL 1 (best) BASIC8.08□□□□□ -1.12
USB1Q9BQ65 MAPK1IP1L-205ENST00000622254 2836 ntAPPRIS P1 TSL 1 (best) BASIC8.08□□□□□ -1.12
USB1Q9BQ65 ABCC2-201ENST00000370434 1714 ntTSL 2 BASIC8.08□□□□□ -1.12
USB1Q9BQ65 FBXW7-204ENST00000393956 1735 ntTSL 2 BASIC8.08□□□□□ -1.12
USB1Q9BQ65 AC016909.2-201ENST00000424510 1711 ntTSL 1 (best) BASIC8.08□□□□□ -1.12
USB1Q9BQ65 PRMT3-203ENST00000437750 1736 ntTSL 2 BASIC8.08□□□□□ -1.12
USB1Q9BQ65 AC244100.3-202ENST00000617328 1721 ntTSL 2 BASIC8.08□□□□□ -1.12
USB1Q9BQ65 STRADA-226ENST00000638276 1865 ntTSL 5 BASIC8.08□□□□□ -1.12
USB1Q9BQ65 TTC3P1-201ENST00000399586 6081 ntBASIC8.08□□□□□ -1.12
USB1Q9BQ65 OR9Q1-201ENST00000335397 2488 ntAPPRIS P1 BASIC8.08□□□□□ -1.12
USB1Q9BQ65 NOL11-201ENST00000253247 2947 ntAPPRIS P1 TSL 1 (best) BASIC8.08□□□□□ -1.12
USB1Q9BQ65 MOV10-202ENST00000369644 4100 ntTSL 1 (best) BASIC8.08□□□□□ -1.12
USB1Q9BQ65 AC023283.1-201ENST00000453491 4897 ntTSL 3 BASIC8.08□□□□□ -1.12
USB1Q9BQ65 OXNAD1-207ENST00000606098 2288 ntAPPRIS ALT2 TSL 5 BASIC8.08□□□□□ -1.12
USB1Q9BQ65 PDPN-212ENST00000621990 2738 ntAPPRIS ALT2 TSL 1 (best) BASIC8.08□□□□□ -1.12
USB1Q9BQ65 AC074281.1-201ENST00000436419 2081 ntBASIC8.07□□□□□ -1.12
USB1Q9BQ65 AL162632.3-201ENST00000566976 1625 ntBASIC8.07□□□□□ -1.12
USB1Q9BQ65 ASNSP6-201ENST00000592770 1618 ntBASIC8.07□□□□□ -1.12
USB1Q9BQ65 FGL1-203ENST00000398054 1462 ntAPPRIS P1 TSL 5 BASIC8.07□□□□□ -1.12
USB1Q9BQ65 TNPO3-202ENST00000471166 3019 ntTSL 5 BASIC8.07□□□□□ -1.12
USB1Q9BQ65 SLC25A14-215ENST00000612248 1734 ntTSL 5 BASIC8.07□□□□□ -1.12
USB1Q9BQ65 MAPK10-285ENST00000641207 2746 ntBASIC8.07□□□□□ -1.12
USB1Q9BQ65 EIF5A2-201ENST00000295822 5593 ntAPPRIS P1 TSL 1 (best) BASIC8.07□□□□□ -1.12
USB1Q9BQ65 AL390036.1-202ENST00000634635 2439 ntTSL 5 BASIC8.07□□□□□ -1.12
USB1Q9BQ65 C1orf131-203ENST00000366651 1432 ntAPPRIS ALT2 TSL 1 (best) BASIC8.07□□□□□ -1.12
USB1Q9BQ65 AL365204.1-201ENST00000423440 1430 ntTSL 5 BASIC8.07□□□□□ -1.12
USB1Q9BQ65 SHC4-203ENST00000537958 1447 ntTSL 2 BASIC8.07□□□□□ -1.12
USB1Q9BQ65 CSN2-201ENST00000353151 1066 ntAPPRIS P1 TSL 1 (best) BASIC8.07□□□□□ -1.12
USB1Q9BQ65 RNA5SP69-201ENST00000364477 117 ntBASIC8.07□□□□□ -1.12
USB1Q9BQ65 NR1I3-203ENST00000367981 1076 ntTSL 1 (best) BASIC8.07□□□□□ -1.12
USB1Q9BQ65 NR1I3-206ENST00000367984 1059 ntTSL 1 (best) BASIC8.07□□□□□ -1.12
USB1Q9BQ65 RPL35-202ENST00000373570 493 ntTSL 3 BASIC8.07□□□□□ -1.12
USB1Q9BQ65 SSX9-201ENST00000376909 591 ntBASIC8.07□□□□□ -1.12
USB1Q9BQ65 RNU6-1122P-201ENST00000384449 107 ntBASIC8.07□□□□□ -1.12
USB1Q9BQ65 AL049693.1-201ENST00000402760 611 ntBASIC8.07□□□□□ -1.12
USB1Q9BQ65 AC009319.1-201ENST00000411493 754 ntBASIC8.07□□□□□ -1.12
USB1Q9BQ65 AL589642.2-201ENST00000413291 839 ntTSL 3 BASIC8.07□□□□□ -1.12
USB1Q9BQ65 Z98751.1-201ENST00000413827 381 ntBASIC8.07□□□□□ -1.12
USB1Q9BQ65 AL158839.1-201ENST00000413943 575 ntTSL 2 BASIC8.07□□□□□ -1.12
USB1Q9BQ65 NONOP2-201ENST00000414613 1231 ntBASIC8.07□□□□□ -1.12
USB1Q9BQ65 AC068481.1-201ENST00000415520 530 ntTSL 4 BASIC8.07□□□□□ -1.12
USB1Q9BQ65 AC018878.1-201ENST00000419904 433 ntTSL 3 BASIC8.07□□□□□ -1.12
USB1Q9BQ65 AC004920.1-201ENST00000422831 482 ntTSL 3 BASIC8.07□□□□□ -1.12
USB1Q9BQ65 AC146944.2-202ENST00000425529 658 ntTSL 3 BASIC8.07□□□□□ -1.12
USB1Q9BQ65 AL645634.2-201ENST00000431956 411 ntTSL 3 BASIC8.07□□□□□ -1.12
USB1Q9BQ65 AL359094.1-210ENST00000432554 730 ntTSL 3 BASIC8.07□□□□□ -1.12
USB1Q9BQ65 RALY-AS1-202ENST00000432859 610 ntTSL 3 BASIC8.07□□□□□ -1.12
USB1Q9BQ65 AC002486.1-201ENST00000435098 391 ntBASIC8.07□□□□□ -1.12
USB1Q9BQ65 AP000350.3-201ENST00000440099 289 ntBASIC8.07□□□□□ -1.12
USB1Q9BQ65 SYNJ2-IT1-201ENST00000442328 599 ntTSL 3 BASIC8.07□□□□□ -1.12
USB1Q9BQ65 GRPEL2P3-201ENST00000448626 640 ntBASIC8.07□□□□□ -1.12
USB1Q9BQ65 GAPDHP17-201ENST00000449858 1001 ntBASIC8.07□□□□□ -1.12
USB1Q9BQ65 BX842559.2-201ENST00000451418 605 ntBASIC8.07□□□□□ -1.12
USB1Q9BQ65 AL137005.1-201ENST00000452944 719 ntTSL 5 BASIC8.07□□□□□ -1.12
USB1Q9BQ65 DNAJC9-AS1-202ENST00000457147 762 ntTSL 1 (best) BASIC8.07□□□□□ -1.12
USB1Q9BQ65 RN7SL541P-201ENST00000464317 283 ntBASIC8.07□□□□□ -1.12
USB1Q9BQ65 SF3B1-211ENST00000487698 2127 ntTSL 1 (best) BASIC8.07□□□□□ -1.12
USB1Q9BQ65 THAP6-203ENST00000502620 582 ntTSL 3 BASIC8.07□□□□□ -1.12
USB1Q9BQ65 AC108078.3-201ENST00000502633 489 ntBASIC8.07□□□□□ -1.12
USB1Q9BQ65 AC114981.1-201ENST00000503897 678 ntBASIC8.07□□□□□ -1.12
USB1Q9BQ65 NR1I3-219ENST00000504010 944 ntTSL 1 (best) BASIC8.07□□□□□ -1.12
USB1Q9BQ65 NR1I3-226ENST00000508740 977 ntTSL 1 (best) BASIC8.07□□□□□ -1.12
USB1Q9BQ65 AC107463.1-203ENST00000509713 284 ntTSL 5 BASIC8.07□□□□□ -1.12
USB1Q9BQ65 AC010457.1-202ENST00000510137 337 ntTSL 2 BASIC8.07□□□□□ -1.12
Retrieved 100 of 98,524 protein–RNA pairs in 69.8 ms