Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 PRKAR1A-204ENST00000536854 3697 ntAPPRIS P1 TSL 1 (best) BASIC6.8□□□□□ -1.32
HDDC3Q8N4P3 CLCN3-202ENST00000360642 3208 ntTSL 2 BASIC6.8□□□□□ -1.32
HDDC3Q8N4P3 EIF2A-202ENST00000406576 1795 ntTSL 2 BASIC6.8□□□□□ -1.32
HDDC3Q8N4P3 OR4G1P-202ENST00000641173 1788 ntBASIC6.8□□□□□ -1.32
HDDC3Q8N4P3 TBX15-201ENST00000207157 3492 ntTSL 1 (best) BASIC6.8□□□□□ -1.32
HDDC3Q8N4P3 TPD52-203ENST00000448733 4339 ntTSL 1 (best) BASIC6.8□□□□□ -1.32
HDDC3Q8N4P3 ABLIM1-207ENST00000392955 7408 ntTSL 5 BASIC6.79□□□□□ -1.32
HDDC3Q8N4P3 GARNL3-205ENST00000435213 3599 ntTSL 2 BASIC6.79□□□□□ -1.32
HDDC3Q8N4P3 ZHX3-217ENST00000560361 4140 ntAPPRIS P1 TSL 1 (best) BASIC6.79□□□□□ -1.32
HDDC3Q8N4P3 HSD17B13-201ENST00000302219 2269 ntTSL 1 (best) BASIC6.79□□□□□ -1.32
HDDC3Q8N4P3 CHORDC1-201ENST00000320585 2654 ntAPPRIS P1 TSL 1 (best) BASIC6.79□□□□□ -1.32
HDDC3Q8N4P3 ZNF14-201ENST00000344099 2949 ntAPPRIS P1 TSL 1 (best) BASIC6.79□□□□□ -1.32
HDDC3Q8N4P3 BEST3-212ENST00000553096 2929 ntTSL 1 (best) BASIC6.79□□□□□ -1.32
HDDC3Q8N4P3 AC138915.4-201ENST00000565549 4147 ntBASIC6.79□□□□□ -1.32
HDDC3Q8N4P3 CRYBA1-201ENST00000225387 783 ntAPPRIS P1 TSL 1 (best) BASIC6.79□□□□□ -1.32
HDDC3Q8N4P3 OR7A2P-201ENST00000304105 930 ntBASIC6.79□□□□□ -1.32
HDDC3Q8N4P3 XAGE5-202ENST00000375501 415 ntAPPRIS P1 TSL 5 BASIC6.79□□□□□ -1.32
HDDC3Q8N4P3 KRTAP3-1-201ENST00000391588 594 ntAPPRIS P1 BASIC6.79□□□□□ -1.32
HDDC3Q8N4P3 AC008171.1-201ENST00000395058 200 ntBASIC6.79□□□□□ -1.32
HDDC3Q8N4P3 VIM2P-201ENST00000402383 1294 ntBASIC6.79□□□□□ -1.32
HDDC3Q8N4P3 PRELID1P1-201ENST00000403549 660 ntBASIC6.79□□□□□ -1.32
HDDC3Q8N4P3 RPL12P23-201ENST00000405880 490 ntBASIC6.79□□□□□ -1.32
HDDC3Q8N4P3 RPL31-202ENST00000409000 641 ntTSL 2 BASIC6.79□□□□□ -1.32
HDDC3Q8N4P3 PLA2G12AP2-201ENST00000424744 264 ntBASIC6.79□□□□□ -1.32
HDDC3Q8N4P3 AC115283.1-201ENST00000427353 400 ntBASIC6.79□□□□□ -1.32
HDDC3Q8N4P3 AC245047.1-201ENST00000433276 873 ntBASIC6.79□□□□□ -1.32
HDDC3Q8N4P3 AL138767.3-201ENST00000438082 495 ntTSL 3 BASIC6.79□□□□□ -1.32
HDDC3Q8N4P3 NFIA-AS2-203ENST00000438559 1275 ntTSL 1 (best) BASIC6.79□□□□□ -1.32
HDDC3Q8N4P3 AL450003.1-201ENST00000439447 455 ntTSL 2 BASIC6.79□□□□□ -1.32
HDDC3Q8N4P3 AL136455.1-201ENST00000441083 1240 ntBASIC6.79□□□□□ -1.32
HDDC3Q8N4P3 AL139161.1-201ENST00000443207 190 ntTSL 5 BASIC6.79□□□□□ -1.32
HDDC3Q8N4P3 OR2AF1P-201ENST00000454899 889 ntBASIC6.79□□□□□ -1.32
HDDC3Q8N4P3 GRIK1-AS1-205ENST00000455392 767 ntTSL 3 BASIC6.79□□□□□ -1.32
HDDC3Q8N4P3 AC096639.1-201ENST00000456240 347 ntTSL 5 BASIC6.79□□□□□ -1.32
HDDC3Q8N4P3 RPL12P24-201ENST00000474907 486 ntBASIC6.79□□□□□ -1.32
HDDC3Q8N4P3 AC084024.1-201ENST00000476186 621 ntTSL 5 BASIC6.79□□□□□ -1.32
HDDC3Q8N4P3 QTRT2-209ENST00000479882 1196 ntTSL 2 BASIC6.79□□□□□ -1.32
HDDC3Q8N4P3 RN7SL413P-201ENST00000482700 297 ntBASIC6.79□□□□□ -1.32
HDDC3Q8N4P3 AC106822.1-201ENST00000502647 526 ntBASIC6.79□□□□□ -1.32
HDDC3Q8N4P3 AC112225.1-201ENST00000508230 297 ntBASIC6.79□□□□□ -1.32
HDDC3Q8N4P3 AC008443.6-204ENST00000511517 738 ntTSL 2 BASIC6.79□□□□□ -1.32
HDDC3Q8N4P3 AC021733.2-201ENST00000518830 497 ntBASIC6.79□□□□□ -1.32
HDDC3Q8N4P3 VEPH1-219ENST00000537559 992 ntTSL 5 BASIC6.79□□□□□ -1.32
HDDC3Q8N4P3 AC078922.1-201ENST00000547547 434 ntTSL 3 BASIC6.79□□□□□ -1.32
HDDC3Q8N4P3 NR2F2-AS1-209ENST00000560800 549 ntTSL 4 BASIC6.79□□□□□ -1.32
HDDC3Q8N4P3 AL390718.1-201ENST00000566904 506 ntTSL 3 BASIC6.79□□□□□ -1.32
HDDC3Q8N4P3 ANP32BP1-202ENST00000568553 737 ntBASIC6.79□□□□□ -1.32
HDDC3Q8N4P3 AC005546.1-201ENST00000591837 391 ntTSL 3 BASIC6.79□□□□□ -1.32
HDDC3Q8N4P3 DYNLL1P1-201ENST00000595442 269 ntBASIC6.79□□□□□ -1.32
HDDC3Q8N4P3 AC244131.2-201ENST00000612592 512 ntTSL 3 BASIC6.79□□□□□ -1.32
HDDC3Q8N4P3 AC022400.9-201ENST00000623633 273 ntBASIC6.79□□□□□ -1.32
HDDC3Q8N4P3 AL157778.1-201ENST00000626665 729 ntTSL 3 BASIC6.79□□□□□ -1.32
HDDC3Q8N4P3 SLFN14-201ENST00000415846 2889 ntAPPRIS P1 TSL 1 (best) BASIC6.79□□□□□ -1.32
HDDC3Q8N4P3 TCF7L2-220ENST00000543371 4037 ntTSL 1 (best) BASIC6.79□□□□□ -1.32
HDDC3Q8N4P3 OR2G6-202ENST00000641501 5840 ntAPPRIS P1 BASIC6.79□□□□□ -1.32
HDDC3Q8N4P3 NR5A2-206ENST00000544748 4775 ntAPPRIS ALT1 TSL 2 BASIC6.79□□□□□ -1.32
HDDC3Q8N4P3 MEF2C-202ENST00000424173 6336 ntAPPRIS P3 TSL 1 (best) BASIC6.79□□□□□ -1.32
HDDC3Q8N4P3 SLF1-201ENST00000265140 5905 ntAPPRIS P1 TSL 2 BASIC6.79□□□□□ -1.32
HDDC3Q8N4P3 RGPD3-201ENST00000304514 5510 ntAPPRIS ALT2 TSL 2 BASIC6.79□□□□□ -1.32
HDDC3Q8N4P3 AC009237.3-203ENST00000442128 3551 ntBASIC6.79□□□□□ -1.32
HDDC3Q8N4P3 MC2R-201ENST00000327606 3656 ntAPPRIS P1 TSL 1 (best) BASIC6.79□□□□□ -1.32
HDDC3Q8N4P3 AC005614.1-201ENST00000598952 3653 ntBASIC6.79□□□□□ -1.32
HDDC3Q8N4P3 ZNF24-201ENST00000261332 6307 ntAPPRIS P1 TSL 1 (best) BASIC6.79□□□□□ -1.32
HDDC3Q8N4P3 ARPP21-220ENST00000441454 2880 ntTSL 1 (best) BASIC6.79□□□□□ -1.32
HDDC3Q8N4P3 AC096564.2-201ENST00000512428 3147 ntTSL 5 BASIC6.79□□□□□ -1.32
HDDC3Q8N4P3 NF1-202ENST00000358273 12425 ntAPPRIS ALT1 TSL 1 (best) BASIC6.78□□□□□ -1.32
HDDC3Q8N4P3 PTPRZ1-202ENST00000449182 4627 ntAPPRIS ALT2 TSL 1 (best) BASIC6.78□□□□□ -1.32
HDDC3Q8N4P3 SLA-201ENST00000338087 3451 ntAPPRIS P1 TSL 1 (best) BASIC6.78□□□□□ -1.32
HDDC3Q8N4P3 AC104837.1-201ENST00000444644 1587 ntBASIC6.78□□□□□ -1.32
HDDC3Q8N4P3 DMC1-203ENST00000428462 2082 ntTSL 2 BASIC6.78□□□□□ -1.32
HDDC3Q8N4P3 EPG5-201ENST00000282041 12633 ntAPPRIS P1 TSL 1 (best) BASIC6.78□□□□□ -1.32
HDDC3Q8N4P3 CBR4-201ENST00000306193 3443 ntAPPRIS P1 TSL 1 (best) BASIC6.78□□□□□ -1.32
HDDC3Q8N4P3 LEO1-201ENST00000299601 2193 ntAPPRIS P1 TSL 1 (best) BASIC6.78□□□□□ -1.32
HDDC3Q8N4P3 CDH12-208ENST00000522262 3028 ntTSL 2 BASIC6.78□□□□□ -1.32
HDDC3Q8N4P3 ANKS4B-201ENST00000311620 4352 ntAPPRIS P1 TSL 1 (best) BASIC6.78□□□□□ -1.32
HDDC3Q8N4P3 LDB2-216ENST00000515064 2295 ntAPPRIS ALT1 TSL 2 BASIC6.78□□□□□ -1.32
HDDC3Q8N4P3 GPATCH2L-201ENST00000261530 14007 ntTSL 2 BASIC6.78□□□□□ -1.32
HDDC3Q8N4P3 TRPM7-201ENST00000313478 10400 ntAPPRIS P3 TSL 1 (best) BASIC6.78□□□□□ -1.32
HDDC3Q8N4P3 GART-204ENST00000381831 3490 ntAPPRIS P1 TSL 1 (best) BASIC6.78□□□□□ -1.32
HDDC3Q8N4P3 CCL2-201ENST00000225831 741 ntAPPRIS P1 TSL 1 (best) BASIC6.78□□□□□ -1.32
HDDC3Q8N4P3 TAS2R42-201ENST00000334266 945 ntAPPRIS P1 BASIC6.78□□□□□ -1.32
HDDC3Q8N4P3 RNA5SP321-201ENST00000362722 111 ntBASIC6.78□□□□□ -1.32
HDDC3Q8N4P3 RNA5SP433-201ENST00000364491 114 ntBASIC6.78□□□□□ -1.32
HDDC3Q8N4P3 DEFB126-201ENST00000382398 655 ntAPPRIS P1 TSL 1 (best) BASIC6.78□□□□□ -1.32
HDDC3Q8N4P3 AC005522.1-201ENST00000395416 346 ntBASIC6.78□□□□□ -1.32
HDDC3Q8N4P3 AL359694.1-201ENST00000403247 604 ntBASIC6.78□□□□□ -1.32
HDDC3Q8N4P3 PDE11A-203ENST00000409504 2102 ntTSL 1 (best) BASIC6.78□□□□□ -1.32
HDDC3Q8N4P3 VNN3-205ENST00000417437 1117 ntTSL 1 (best) BASIC6.78□□□□□ -1.32
HDDC3Q8N4P3 BX119917.1-201ENST00000432517 502 ntBASIC6.78□□□□□ -1.32
HDDC3Q8N4P3 NAP1L4P3-201ENST00000432820 1147 ntBASIC6.78□□□□□ -1.32
HDDC3Q8N4P3 AC104233.1-201ENST00000458107 339 ntTSL 5 BASIC6.78□□□□□ -1.32
HDDC3Q8N4P3 AC099328.2-201ENST00000465347 455 ntTSL 3 BASIC6.78□□□□□ -1.32
HDDC3Q8N4P3 TAS2R50-201ENST00000506868 1000 ntAPPRIS P1 BASIC6.78□□□□□ -1.32
HDDC3Q8N4P3 AC007106.1-201ENST00000509666 600 ntTSL 4 BASIC6.78□□□□□ -1.32
HDDC3Q8N4P3 AP003059.1-201ENST00000526206 432 ntTSL 5 BASIC6.78□□□□□ -1.32
HDDC3Q8N4P3 RSF1-IT2-201ENST00000529656 566 ntTSL 5 BASIC6.78□□□□□ -1.32
HDDC3Q8N4P3 COPZ1-205ENST00000548753 778 ntTSL 3 BASIC6.78□□□□□ -1.32
HDDC3Q8N4P3 AC012464.1-201ENST00000550687 540 ntTSL 4 BASIC6.78□□□□□ -1.32
HDDC3Q8N4P3 AC013640.1-201ENST00000565366 565 ntTSL 3 BASIC6.78□□□□□ -1.32
HDDC3Q8N4P3 RN7SL199P-201ENST00000578752 281 ntBASIC6.78□□□□□ -1.32
Retrieved 100 of 98,524 protein–RNA pairs in 115 ms