Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 AL391863.1-202ENST00000457427 612 ntTSL 5 BASIC5.81□□□□□ -1.48
NKX3-1Q99801 RPL7AP30-201ENST00000482859 796 ntBASIC5.81□□□□□ -1.48
NKX3-1Q99801 AC025271.1-201ENST00000485045 429 ntBASIC5.81□□□□□ -1.48
NKX3-1Q99801 SNORA58-201ENST00000505219 137 ntBASIC5.81□□□□□ -1.48
NKX3-1Q99801 IGHVII-51-2-201ENST00000519778 259 ntBASIC5.81□□□□□ -1.48
NKX3-1Q99801 AC018953.1-201ENST00000523265 730 ntTSL 2 BASIC5.81□□□□□ -1.48
NKX3-1Q99801 NATP-201ENST00000523491 878 ntBASIC5.81□□□□□ -1.48
NKX3-1Q99801 AP004607.6-201ENST00000525033 1202 ntBASIC5.81□□□□□ -1.48
NKX3-1Q99801 AP001646.2-201ENST00000528645 1156 ntBASIC5.81□□□□□ -1.48
NKX3-1Q99801 RPL27A-211ENST00000532359 406 ntTSL 2 BASIC5.81□□□□□ -1.48
NKX3-1Q99801 AC087286.3-201ENST00000561409 953 ntTSL 3 BASIC5.81□□□□□ -1.48
NKX3-1Q99801 AC138811.2-201ENST00000567078 764 ntAPPRIS P1 TSL 3 BASIC5.81□□□□□ -1.48
NKX3-1Q99801 AC011447.2-201ENST00000592921 283 ntBASIC5.81□□□□□ -1.48
NKX3-1Q99801 AC011497.2-201ENST00000600255 639 ntBASIC5.81□□□□□ -1.48
NKX3-1Q99801 AC004908.1-201ENST00000606572 541 ntBASIC5.81□□□□□ -1.48
NKX3-1Q99801 EDRF1-AS1-210ENST00000613304 569 ntTSL 5 BASIC5.81□□□□□ -1.48
NKX3-1Q99801 AL357153.4-201ENST00000620487 1016 ntBASIC5.81□□□□□ -1.48
NKX3-1Q99801 AC027506.1-201ENST00000621395 198 ntBASIC5.81□□□□□ -1.48
NKX3-1Q99801 PPP1R11-201ENST00000376758 1723 ntTSL 2 BASIC5.81□□□□□ -1.48
NKX3-1Q99801 CASC11-201ENST00000502463 3301 ntTSL 2 BASIC5.81□□□□□ -1.48
NKX3-1Q99801 MTO1-202ENST00000370305 2174 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
NKX3-1Q99801 AP003486.1-201ENST00000525716 3994 ntBASIC5.81□□□□□ -1.48
NKX3-1Q99801 AC009779.8-201ENST00000641684 4384 ntBASIC5.81□□□□□ -1.48
NKX3-1Q99801 OR12D3-201ENST00000396806 1869 ntAPPRIS P1 BASIC5.81□□□□□ -1.48
NKX3-1Q99801 PUM1-206ENST00000426105 4043 ntAPPRIS ALT1 TSL 1 (best) BASIC5.81□□□□□ -1.48
NKX3-1Q99801 PTPRO-208ENST00000542557 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC5.81□□□□□ -1.48
NKX3-1Q99801 GCNT2-201ENST00000265012 4214 ntAPPRIS P3 TSL 1 (best) BASIC5.81□□□□□ -1.48
NKX3-1Q99801 GPR65-201ENST00000267549 4522 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
NKX3-1Q99801 TPH1-201ENST00000250018 5325 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
NKX3-1Q99801 BRIP1-201ENST00000259008 6048 ntAPPRIS P2 TSL 1 (best) BASIC5.8□□□□□ -1.48
NKX3-1Q99801 SSXP3-201ENST00000442971 1300 ntBASIC5.8□□□□□ -1.48
NKX3-1Q99801 NCOA4-206ENST00000585056 2124 ntTSL 2 BASIC5.8□□□□□ -1.48
NKX3-1Q99801 KIAA1109-201ENST00000264501 15896 ntAPPRIS P1 TSL 5 BASIC5.8□□□□□ -1.48
NKX3-1Q99801 HESX1-201ENST00000295934 981 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
NKX3-1Q99801 OR1A1-201ENST00000304094 930 ntAPPRIS P1 BASIC5.8□□□□□ -1.48
NKX3-1Q99801 SPRR2D-202ENST00000368756 788 ntAPPRIS P1 TSL 2 BASIC5.8□□□□□ -1.48
NKX3-1Q99801 MIR138-2-201ENST00000384916 84 ntBASIC5.8□□□□□ -1.48
NKX3-1Q99801 CYCSP17-201ENST00000407870 315 ntBASIC5.8□□□□□ -1.48
NKX3-1Q99801 AL139100.1-201ENST00000408001 498 ntBASIC5.8□□□□□ -1.48
NKX3-1Q99801 PLGLB1-202ENST00000409310 960 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
NKX3-1Q99801 AL662791.3-201ENST00000413771 776 ntBASIC5.8□□□□□ -1.48
NKX3-1Q99801 AC106870.2-201ENST00000421411 691 ntTSL 3 BASIC5.8□□□□□ -1.48
NKX3-1Q99801 EIF4A1P5-201ENST00000428062 1095 ntBASIC5.8□□□□□ -1.48
NKX3-1Q99801 OSTCP2-201ENST00000437956 444 ntBASIC5.8□□□□□ -1.48
NKX3-1Q99801 LMCD1-AS1-202ENST00000439407 576 ntTSL 4 BASIC5.8□□□□□ -1.48
NKX3-1Q99801 ST13P21-201ENST00000453250 1098 ntBASIC5.8□□□□□ -1.48
NKX3-1Q99801 AC068196.1-201ENST00000456895 833 ntTSL 3 BASIC5.8□□□□□ -1.48
NKX3-1Q99801 CBX5P1-201ENST00000468470 561 ntBASIC5.8□□□□□ -1.48
NKX3-1Q99801 ADAM3A-209ENST00000497806 1245 ntTSL 5 BASIC5.8□□□□□ -1.48
NKX3-1Q99801 OR51A1P-201ENST00000511110 946 ntBASIC5.8□□□□□ -1.48
NKX3-1Q99801 AC018680.1-201ENST00000513332 875 ntTSL 3 BASIC5.8□□□□□ -1.48
NKX3-1Q99801 C8orf37-AS1-201ENST00000517437 456 ntTSL 3 BASIC5.8□□□□□ -1.48
NKX3-1Q99801 AC010609.1-201ENST00000519375 569 ntTSL 3 BASIC5.8□□□□□ -1.48
NKX3-1Q99801 COX6C-205ENST00000520468 1098 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
NKX3-1Q99801 ZNF706-212ENST00000520984 782 ntAPPRIS P1 TSL 5 BASIC5.8□□□□□ -1.48
NKX3-1Q99801 AC022784.5-201ENST00000522241 437 ntBASIC5.8□□□□□ -1.48
NKX3-1Q99801 AP001007.2-201ENST00000525429 593 ntTSL 3 BASIC5.8□□□□□ -1.48
NKX3-1Q99801 NDUFA3P2-201ENST00000531434 232 ntBASIC5.8□□□□□ -1.48
NKX3-1Q99801 PDCL3P1-201ENST00000534575 734 ntBASIC5.8□□□□□ -1.48
NKX3-1Q99801 AC140063.1-201ENST00000541343 259 ntBASIC5.8□□□□□ -1.48
NKX3-1Q99801 AC009269.5-201ENST00000557800 755 ntTSL 3 BASIC5.8□□□□□ -1.48
NKX3-1Q99801 AC018767.3-201ENST00000564185 481 ntTSL 3 BASIC5.8□□□□□ -1.48
NKX3-1Q99801 AC126323.4-201ENST00000566935 234 ntBASIC5.8□□□□□ -1.48
NKX3-1Q99801 AC023421.2-202ENST00000586213 547 ntTSL 3 BASIC5.8□□□□□ -1.48
NKX3-1Q99801 AC073539.3-201ENST00000601905 386 ntTSL 3 BASIC5.8□□□□□ -1.48
NKX3-1Q99801 FAM13A-AS1_2.1-201ENST00000611121 108 ntBASIC5.8□□□□□ -1.48
NKX3-1Q99801 MIR6774-201ENST00000614651 70 ntBASIC5.8□□□□□ -1.48
NKX3-1Q99801 MIR6883-201ENST00000614952 78 ntBASIC5.8□□□□□ -1.48
NKX3-1Q99801 AC107308.1-201ENST00000615897 301 ntBASIC5.8□□□□□ -1.48
NKX3-1Q99801 AC243829.2-201ENST00000617914 470 ntTSL 3 BASIC5.8□□□□□ -1.48
NKX3-1Q99801 AC012653.2-201ENST00000621880 420 ntBASIC5.8□□□□□ -1.48
NKX3-1Q99801 AC008626.2-201ENST00000624425 248 ntBASIC5.8□□□□□ -1.48
NKX3-1Q99801 AC073263.3-201ENST00000624449 858 ntBASIC5.8□□□□□ -1.48
NKX3-1Q99801 LINC00836-201ENST00000625325 582 ntTSL 4 BASIC5.8□□□□□ -1.48
NKX3-1Q99801 AC026108.1-201ENST00000635444 547 ntBASIC5.8□□□□□ -1.48
NKX3-1Q99801 AC104461.1-201ENST00000637430 817 ntTSL 5 BASIC5.8□□□□□ -1.48
NKX3-1Q99801 ALG10B-201ENST00000308742 10253 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
NKX3-1Q99801 MARCH7-201ENST00000259050 5922 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
NKX3-1Q99801 SBNO1-201ENST00000267176 11121 ntAPPRIS P3 TSL 5 BASIC5.8□□□□□ -1.48
NKX3-1Q99801 ZNF880-202ENST00000422689 2230 ntAPPRIS P1 TSL 2 BASIC5.8□□□□□ -1.48
NKX3-1Q99801 IMPG1-201ENST00000369950 3558 ntAPPRIS P3 TSL 1 (best) BASIC5.8□□□□□ -1.48
NKX3-1Q99801 PPP1R11-206ENST00000376773 1640 ntTSL 3 BASIC5.8□□□□□ -1.48
NKX3-1Q99801 THRB-203ENST00000396671 7506 ntAPPRIS P2 TSL 5 BASIC5.8□□□□□ -1.48
NKX3-1Q99801 ATAD1-202ENST00000328142 2939 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
NKX3-1Q99801 FSCB-201ENST00000340446 2938 ntAPPRIS P1 BASIC5.8□□□□□ -1.48
NKX3-1Q99801 ARCN1-202ENST00000359415 4038 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
NKX3-1Q99801 SNX18P3-202ENST00000565670 1750 ntBASIC5.8□□□□□ -1.48
NKX3-1Q99801 VPS35-201ENST00000299138 6790 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
NKX3-1Q99801 TCF12-205ENST00000537840 1598 ntTSL 2 BASIC5.8□□□□□ -1.48
NKX3-1Q99801 TTC41P-205ENST00000551270 3963 ntBASIC5.8□□□□□ -1.48
NKX3-1Q99801 SSH2-204ENST00000540801 4538 ntAPPRIS ALT2 TSL 2 BASIC5.8□□□□□ -1.48
NKX3-1Q99801 NR5A2-203ENST00000367362 5086 ntAPPRIS P3 TSL 1 (best) BASIC5.8□□□□□ -1.48
NKX3-1Q99801 USP50-203ENST00000532404 1386 ntAPPRIS P2 TSL 5 BASIC5.8□□□□□ -1.48
NKX3-1Q99801 AC102941.1-201ENST00000567616 1537 ntBASIC5.79□□□□□ -1.48
NKX3-1Q99801 CDKAL1-202ENST00000378610 3115 ntAPPRIS P1 TSL 2 BASIC5.79□□□□□ -1.48
NKX3-1Q99801 LGALS8-220ENST00000526634 1852 ntAPPRIS ALT2 TSL 5 BASIC5.79□□□□□ -1.48
NKX3-1Q99801 AC097717.1-227ENST00000594069 1322 ntTSL 5 BASIC5.79□□□□□ -1.48
NKX3-1Q99801 RALGAPA2-201ENST00000202677 6152 ntAPPRIS P1 TSL 5 BASIC5.79□□□□□ -1.48
NKX3-1Q99801 OFD1P17-201ENST00000437639 3018 ntBASIC5.79□□□□□ -1.48
NKX3-1Q99801 IARS-213ENST00000627121 4587 ntTSL 5 BASIC5.79□□□□□ -1.48
Retrieved 100 of 98,524 protein–RNA pairs in 398.6 ms