Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 LINC02246-206ENST00000630211 712 ntTSL 5 BASIC6.61□□□□□ -1.35
VMP1Q96GC9 AC073869.7-201ENST00000640874 297 ntBASIC6.61□□□□□ -1.35
VMP1Q96GC9 AL139254.2-202ENST00000641937 1156 ntBASIC6.61□□□□□ -1.35
VMP1Q96GC9 FBXO7-202ENST00000397426 1888 ntTSL 2 BASIC6.61□□□□□ -1.35
VMP1Q96GC9 PPP4R3CP-201ENST00000412172 3131 ntAPPRIS P1 BASIC6.61□□□□□ -1.35
VMP1Q96GC9 IFT80-225ENST00000496589 3073 ntTSL 2 BASIC6.61□□□□□ -1.35
VMP1Q96GC9 NCOR1-204ENST00000395851 7950 ntTSL 1 (best) BASIC6.61□□□□□ -1.35
VMP1Q96GC9 LRRC37A12P-201ENST00000454917 1801 ntBASIC6.61□□□□□ -1.35
VMP1Q96GC9 MTCO1P25-201ENST00000414449 1799 ntBASIC6.61□□□□□ -1.35
VMP1Q96GC9 ZNF14-201ENST00000344099 2949 ntAPPRIS P1 TSL 1 (best) BASIC6.61□□□□□ -1.35
VMP1Q96GC9 SYCP1-201ENST00000369518 3452 ntAPPRIS P1 TSL 5 BASIC6.61□□□□□ -1.35
VMP1Q96GC9 ZNF484-202ENST00000375495 2867 ntAPPRIS P3 TSL 1 (best) BASIC6.61□□□□□ -1.35
VMP1Q96GC9 VIRMA-202ENST00000421249 3924 ntTSL 1 (best) BASIC6.61□□□□□ -1.35
VMP1Q96GC9 KIF27-202ENST00000334204 4400 ntAPPRIS ALT2 TSL 1 (best) BASIC6.61□□□□□ -1.35
VMP1Q96GC9 ARCN1-201ENST00000264028 3845 ntAPPRIS P1 TSL 1 (best) BASIC6.61□□□□□ -1.35
VMP1Q96GC9 RNASE13-201ENST00000382951 1607 ntAPPRIS P1 TSL 1 (best) BASIC6.61□□□□□ -1.35
VMP1Q96GC9 AADAT-202ENST00000353187 2101 ntAPPRIS P3 TSL 2 BASIC6.61□□□□□ -1.35
VMP1Q96GC9 PCNX4-201ENST00000317623 17339 ntAPPRIS P3 TSL 5 BASIC6.61□□□□□ -1.35
VMP1Q96GC9 ECT2-201ENST00000232458 4087 ntAPPRIS P2 TSL 1 (best) BASIC6.6□□□□□ -1.35
VMP1Q96GC9 AC011503.2-201ENST00000594230 1500 ntBASIC6.6□□□□□ -1.35
VMP1Q96GC9 B3GALT5-203ENST00000380620 13170 ntAPPRIS P1 TSL 1 (best) BASIC6.6□□□□□ -1.35
VMP1Q96GC9 OR2T5-201ENST00000641363 2525 ntAPPRIS P1 BASIC6.6□□□□□ -1.35
VMP1Q96GC9 OR52N1-202ENST00000641645 2545 ntAPPRIS P1 BASIC6.6□□□□□ -1.35
VMP1Q96GC9 SMAD5-211ENST00000545279 7012 ntAPPRIS P1 TSL 1 (best) BASIC6.6□□□□□ -1.35
VMP1Q96GC9 POF1B-202ENST00000373145 1972 ntAPPRIS ALT2 TSL 1 (best) BASIC6.6□□□□□ -1.35
VMP1Q96GC9 MSL3P1-202ENST00000440028 1468 ntBASIC6.6□□□□□ -1.35
VMP1Q96GC9 ERAP2-202ENST00000437043 5705 ntAPPRIS P1 TSL 1 (best) BASIC6.6□□□□□ -1.35
VMP1Q96GC9 AC092111.2-201ENST00000611627 1414 ntBASIC6.6□□□□□ -1.35
VMP1Q96GC9 IFIT1-201ENST00000371804 1880 ntAPPRIS P1 TSL 1 (best) BASIC6.6□□□□□ -1.35
VMP1Q96GC9 LINC02227-201ENST00000619068 3748 ntTSL 1 (best) BASIC6.6□□□□□ -1.35
VMP1Q96GC9 LRRC37B-220ENST00000584368 2773 ntTSL 1 (best) BASIC6.6□□□□□ -1.35
VMP1Q96GC9 CACNA1E-202ENST00000358338 14700 ntAPPRIS ALT2 TSL 5 BASIC6.6□□□□□ -1.35
VMP1Q96GC9 AC090774.4-201ENST00000578888 1372 ntBASIC6.6□□□□□ -1.35
VMP1Q96GC9 AC011346.1-201ENST00000638059 1359 ntAPPRIS ALT2 TSL 5 BASIC6.6□□□□□ -1.35
VMP1Q96GC9 AC245100.4-202ENST00000634638 1342 ntTSL 5 BASIC6.6□□□□□ -1.35
VMP1Q96GC9 DLG2-207ENST00000398309 7890 ntTSL 1 (best) BASIC6.6□□□□□ -1.35
VMP1Q96GC9 LINC02183-201ENST00000637822 1732 ntTSL 5 BASIC6.6□□□□□ -1.35
VMP1Q96GC9 PPIAL4G-201ENST00000419275 3856 ntAPPRIS P1 BASIC6.6□□□□□ -1.35
VMP1Q96GC9 RNA5SP429-201ENST00000363688 109 ntBASIC6.6□□□□□ -1.35
VMP1Q96GC9 RNA5SP512-201ENST00000364550 120 ntBASIC6.6□□□□□ -1.35
VMP1Q96GC9 TAAR2-202ENST00000367931 1056 ntAPPRIS ALT2 TSL 1 (best) BASIC6.6□□□□□ -1.35
VMP1Q96GC9 FAM66C-201ENST00000372173 678 ntTSL 5 BASIC6.6□□□□□ -1.35
VMP1Q96GC9 RNU1-56P-201ENST00000391303 164 ntBASIC6.6□□□□□ -1.35
VMP1Q96GC9 CCR8-202ENST00000414803 1078 ntTSL 1 (best) BASIC6.6□□□□□ -1.35
VMP1Q96GC9 GAPDHP69-201ENST00000425504 1008 ntBASIC6.6□□□□□ -1.35
VMP1Q96GC9 AC009303.1-201ENST00000426307 352 ntBASIC6.6□□□□□ -1.35
VMP1Q96GC9 AL121916.1-201ENST00000429405 308 ntBASIC6.6□□□□□ -1.35
VMP1Q96GC9 MIR181A1HG-202ENST00000432296 930 ntTSL 3 BASIC6.6□□□□□ -1.35
VMP1Q96GC9 AC012594.1-271ENST00000438635 736 ntTSL 3 BASIC6.6□□□□□ -1.35
VMP1Q96GC9 AC114814.1-201ENST00000444926 691 ntTSL 3 BASIC6.6□□□□□ -1.35
VMP1Q96GC9 AF196972.1-201ENST00000445586 653 ntTSL 3 BASIC6.6□□□□□ -1.35
VMP1Q96GC9 PRDX1P1-201ENST00000449329 596 ntBASIC6.6□□□□□ -1.35
VMP1Q96GC9 EIF3LP2-201ENST00000457262 807 ntBASIC6.6□□□□□ -1.35
VMP1Q96GC9 AC126615.1-201ENST00000470084 630 ntBASIC6.6□□□□□ -1.35
VMP1Q96GC9 OR10J9P-201ENST00000511932 987 ntBASIC6.6□□□□□ -1.35
VMP1Q96GC9 IQCH-203ENST00000512104 1000 ntTSL 2 BASIC6.6□□□□□ -1.35
VMP1Q96GC9 SCARNA6-201ENST00000515982 265 ntBASIC6.6□□□□□ -1.35
VMP1Q96GC9 IGHVII-51-2-201ENST00000519778 259 ntBASIC6.6□□□□□ -1.35
VMP1Q96GC9 AC018953.1-201ENST00000523265 730 ntTSL 2 BASIC6.6□□□□□ -1.35
VMP1Q96GC9 AP001007.2-201ENST00000525429 593 ntTSL 3 BASIC6.6□□□□□ -1.35
VMP1Q96GC9 CRYAB-207ENST00000527950 887 ntAPPRIS P1 TSL 5 BASIC6.6□□□□□ -1.35
VMP1Q96GC9 AC079089.1-202ENST00000528800 1256 ntTSL 1 (best) BASIC6.6□□□□□ -1.35
VMP1Q96GC9 LINC01559-203ENST00000531049 683 ntTSL 3 BASIC6.6□□□□□ -1.35
VMP1Q96GC9 OR4A1P-201ENST00000532342 920 ntBASIC6.6□□□□□ -1.35
VMP1Q96GC9 AC079866.1-201ENST00000534985 1220 ntBASIC6.6□□□□□ -1.35
VMP1Q96GC9 AP000619.2-201ENST00000546014 969 ntBASIC6.6□□□□□ -1.35
VMP1Q96GC9 RN7SL131P-201ENST00000579043 256 ntBASIC6.6□□□□□ -1.35
VMP1Q96GC9 AL353811.1-202ENST00000602614 618 ntTSL 3 BASIC6.6□□□□□ -1.35
VMP1Q96GC9 AL356056.3-201ENST00000605984 551 ntTSL 3 BASIC6.6□□□□□ -1.35
VMP1Q96GC9 AC243919.1-201ENST00000613086 785 ntTSL 5 BASIC6.6□□□□□ -1.35
VMP1Q96GC9 AMYH02020865.1-207ENST00000617096 458 ntTSL 3 BASIC6.6□□□□□ -1.35
VMP1Q96GC9 AL161420.1-201ENST00000619393 264 ntBASIC6.6□□□□□ -1.35
VMP1Q96GC9 LINC00251-201ENST00000627569 1055 ntTSL 3 BASIC6.6□□□□□ -1.35
VMP1Q96GC9 TRPM6-202ENST00000360774 8425 ntTSL 1 (best) BASIC6.6□□□□□ -1.35
VMP1Q96GC9 DOCK11-201ENST00000276202 6625 ntAPPRIS P2 TSL 1 (best) BASIC6.6□□□□□ -1.35
VMP1Q96GC9 RBPJ-202ENST00000342320 5761 ntAPPRIS P3 TSL 1 (best) BASIC6.6□□□□□ -1.35
VMP1Q96GC9 SPAG9-209ENST00000510283 4949 ntTSL 2 BASIC6.6□□□□□ -1.35
VMP1Q96GC9 ELMOD2-201ENST00000323570 4409 ntAPPRIS P1 TSL 1 (best) BASIC6.6□□□□□ -1.35
VMP1Q96GC9 AF127577.4-201ENST00000432230 5929 ntTSL 5 BASIC6.6□□□□□ -1.35
VMP1Q96GC9 ADH4-212ENST00000629236 1974 ntTSL 5 BASIC6.6□□□□□ -1.35
VMP1Q96GC9 RNF19BPY-201ENST00000458209 1550 ntBASIC6.6□□□□□ -1.35
VMP1Q96GC9 EPHA6-204ENST00000502694 1582 ntTSL 1 (best) BASIC6.6□□□□□ -1.35
VMP1Q96GC9 LCP2-206ENST00000521416 1599 ntTSL 2 BASIC6.6□□□□□ -1.35
VMP1Q96GC9 ZNF329-203ENST00000597186 3930 ntAPPRIS P1 TSL 5 BASIC6.6□□□□□ -1.35
VMP1Q96GC9 ITCH-201ENST00000262650 3089 ntTSL 1 (best) BASIC6.6□□□□□ -1.35
VMP1Q96GC9 API5P1-201ENST00000424316 1510 ntBASIC6.6□□□□□ -1.35
VMP1Q96GC9 AL358913.2-201ENST00000553881 1548 ntBASIC6.6□□□□□ -1.35
VMP1Q96GC9 TMOD2-203ENST00000539962 3000 ntTSL 2 BASIC6.6□□□□□ -1.35
VMP1Q96GC9 OSBPL1A-202ENST00000357041 1869 ntTSL 2 BASIC6.6□□□□□ -1.35
VMP1Q96GC9 IL1R1-202ENST00000409329 1862 ntTSL 5 BASIC6.6□□□□□ -1.35
VMP1Q96GC9 GRAMD1C-208ENST00000472026 1876 ntTSL 2 BASIC6.6□□□□□ -1.35
VMP1Q96GC9 LRMP-204ENST00000547044 2208 ntAPPRIS P2 TSL 1 (best) BASIC6.6□□□□□ -1.35
VMP1Q96GC9 MDM4-216ENST00000616250 9597 ntTSL 5 BASIC6.6□□□□□ -1.35
VMP1Q96GC9 GALNT11-201ENST00000415421 2555 ntTSL 1 (best) BASIC6.6□□□□□ -1.35
VMP1Q96GC9 ERI2-206ENST00000563117 2903 ntTSL 2 BASIC6.6□□□□□ -1.35
VMP1Q96GC9 AL161912.4-201ENST00000623889 2468 ntBASIC6.59□□□□□ -1.35
VMP1Q96GC9 MYO3B-202ENST00000408978 5529 ntAPPRIS P3 TSL 1 (best) BASIC6.59□□□□□ -1.35
VMP1Q96GC9 RABGAP1L-218ENST00000489615 6821 ntTSL 1 (best) BASIC6.59□□□□□ -1.35
VMP1Q96GC9 ASNSP6-201ENST00000592770 1618 ntBASIC6.59□□□□□ -1.35
VMP1Q96GC9 SCARB2-207ENST00000638295 4507 ntTSL 5 BASIC6.59□□□□□ -1.35
Retrieved 100 of 98,524 protein–RNA pairs in 139.9 ms