Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 AL713923.1-201ENST00000414071 378 ntTSL 5 BASIC5.84□□□□□ -1.47
NKX3-1Q99801 MEAF6P1-201ENST00000416092 327 ntBASIC5.84□□□□□ -1.47
NKX3-1Q99801 AL034345.2-202ENST00000416948 830 ntTSL 2 BASIC5.84□□□□□ -1.47
NKX3-1Q99801 AL162400.1-201ENST00000418091 359 ntTSL 5 BASIC5.84□□□□□ -1.47
NKX3-1Q99801 SNX19-202ENST00000426933 888 ntTSL 2 BASIC5.84□□□□□ -1.47
NKX3-1Q99801 YY1P1-201ENST00000427625 668 ntBASIC5.84□□□□□ -1.47
NKX3-1Q99801 GTF2A1-202ENST00000434192 1199 ntTSL 1 (best) BASIC5.84□□□□□ -1.47
NKX3-1Q99801 ARPP21-217ENST00000436702 561 ntTSL 4 BASIC5.84□□□□□ -1.47
NKX3-1Q99801 AF196972.1-201ENST00000445586 653 ntTSL 3 BASIC5.84□□□□□ -1.47
NKX3-1Q99801 AL358176.1-201ENST00000457477 357 ntTSL 5 BASIC5.84□□□□□ -1.47
NKX3-1Q99801 C2orf74-204ENST00000464909 726 ntAPPRIS P2 TSL 2 BASIC5.84□□□□□ -1.47
NKX3-1Q99801 SEC62-AS1-201ENST00000479626 346 ntTSL 5 BASIC5.84□□□□□ -1.47
NKX3-1Q99801 AF305872.1-201ENST00000485217 471 ntBASIC5.84□□□□□ -1.47
NKX3-1Q99801 NPM1P27-201ENST00000502784 830 ntBASIC5.84□□□□□ -1.47
NKX3-1Q99801 RNA5SP518-201ENST00000515957 119 ntBASIC5.84□□□□□ -1.47
NKX3-1Q99801 AC113423.2-201ENST00000517582 545 ntTSL 2 BASIC5.84□□□□□ -1.47
NKX3-1Q99801 SOX9-AS1-208ENST00000529667 340 ntTSL 3 BASIC5.84□□□□□ -1.47
NKX3-1Q99801 AL031846.1-201ENST00000560933 314 ntBASIC5.84□□□□□ -1.47
NKX3-1Q99801 AC008551.1-201ENST00000575612 405 ntTSL 5 BASIC5.84□□□□□ -1.47
NKX3-1Q99801 AC005208.1-202ENST00000587325 725 ntTSL 3 BASIC5.84□□□□□ -1.47
NKX3-1Q99801 AC005837.2-201ENST00000587459 479 ntAPPRIS P1 TSL 5 BASIC5.84□□□□□ -1.47
NKX3-1Q99801 ZNF397-211ENST00000592264 1104 ntTSL 3 BASIC5.84□□□□□ -1.47
NKX3-1Q99801 AC090953.1-201ENST00000604305 1092 ntBASIC5.84□□□□□ -1.47
NKX3-1Q99801 AL031777.2-201ENST00000611953 196 ntBASIC5.84□□□□□ -1.47
NKX3-1Q99801 CCL23-203ENST00000615050 624 ntAPPRIS P3 TSL 1 (best) BASIC5.84□□□□□ -1.47
NKX3-1Q99801 AC007347.2-201ENST00000623044 180 ntBASIC5.84□□□□□ -1.47
NKX3-1Q99801 AC093909.6-201ENST00000624757 775 ntBASIC5.84□□□□□ -1.47
NKX3-1Q99801 SNX18P10-201ENST00000625014 519 ntBASIC5.84□□□□□ -1.47
NKX3-1Q99801 AL354702.2-202ENST00000641481 890 ntBASIC5.84□□□□□ -1.47
NKX3-1Q99801 FSTL5-201ENST00000306100 4831 ntAPPRIS P3 TSL 1 (best) BASIC5.84□□□□□ -1.47
NKX3-1Q99801 FAM161A-202ENST00000404929 3762 ntAPPRIS ALT2 TSL 1 (best) BASIC5.84□□□□□ -1.47
NKX3-1Q99801 MAGI2-235ENST00000637282 3174 ntTSL 5 BASIC5.84□□□□□ -1.47
NKX3-1Q99801 ADGRE1-202ENST00000312053 3128 ntAPPRIS P3 TSL 1 (best) BASIC5.84□□□□□ -1.47
NKX3-1Q99801 AC007485.2-201ENST00000623493 1667 ntBASIC5.84□□□□□ -1.47
NKX3-1Q99801 ZNF415-204ENST00000594011 2630 ntTSL 2 BASIC5.84□□□□□ -1.47
NKX3-1Q99801 C2CD6-203ENST00000439802 1639 ntAPPRIS ALT2 TSL 2 BASIC5.84□□□□□ -1.47
NKX3-1Q99801 TBC1D5-201ENST00000253692 7854 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.48
NKX3-1Q99801 CHD6-202ENST00000373222 2477 ntTSL 1 (best) BASIC5.84□□□□□ -1.48
NKX3-1Q99801 TXNRD1-203ENST00000397736 3832 ntTSL 5 BASIC5.84□□□□□ -1.48
NKX3-1Q99801 ZNF184-202ENST00000377419 2899 ntAPPRIS P1 TSL 4 BASIC5.84□□□□□ -1.48
NKX3-1Q99801 LEKR1-204ENST00000470811 2881 ntTSL 2 BASIC5.84□□□□□ -1.48
NKX3-1Q99801 ECT2-201ENST00000232458 4087 ntAPPRIS P2 TSL 1 (best) BASIC5.84□□□□□ -1.48
NKX3-1Q99801 AL391261.1-201ENST00000555712 1479 ntBASIC5.83□□□□□ -1.48
NKX3-1Q99801 TPRG1-204ENST00000433971 2296 ntAPPRIS P1 TSL 2 BASIC5.83□□□□□ -1.48
NKX3-1Q99801 ATG12-202ENST00000500945 1430 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
NKX3-1Q99801 KIAA0391-203ENST00000534898 2611 ntAPPRIS P3 TSL 1 (best) BASIC5.83□□□□□ -1.48
NKX3-1Q99801 AL449283.1-201ENST00000602631 3403 ntBASIC5.83□□□□□ -1.48
NKX3-1Q99801 NUDT13-206ENST00000537969 2151 ntTSL 2 BASIC5.83□□□□□ -1.48
NKX3-1Q99801 TINAG-201ENST00000259782 1754 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
NKX3-1Q99801 MAGI2-222ENST00000636039 5671 ntTSL 5 BASIC5.83□□□□□ -1.48
NKX3-1Q99801 NOSTRIN-209ENST00000458381 2535 ntTSL 2 BASIC5.83□□□□□ -1.48
NKX3-1Q99801 PRICKLE1-202ENST00000445766 4075 ntAPPRIS P1 TSL 5 BASIC5.83□□□□□ -1.48
NKX3-1Q99801 PTPN3-202ENST00000374541 6703 ntAPPRIS P1 TSL 5 BASIC5.83□□□□□ -1.48
NKX3-1Q99801 CPS1-204ENST00000451903 4770 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
NKX3-1Q99801 TLK2-214ENST00000582809 3608 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
NKX3-1Q99801 NSD1-201ENST00000347982 7688 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
NKX3-1Q99801 MAPK10-261ENST00000641050 3109 ntBASIC5.83□□□□□ -1.48
NKX3-1Q99801 DEFB4A-201ENST00000302247 380 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
NKX3-1Q99801 OR2L2-201ENST00000366479 1134 ntAPPRIS P1 BASIC5.83□□□□□ -1.48
NKX3-1Q99801 RPS3AP5-201ENST00000389400 821 ntBASIC5.83□□□□□ -1.48
NKX3-1Q99801 AP001043.1-203ENST00000415824 407 ntTSL 5 BASIC5.83□□□□□ -1.48
NKX3-1Q99801 ZNF138-205ENST00000440155 1066 ntAPPRIS P3 TSL 2 BASIC5.83□□□□□ -1.48
NKX3-1Q99801 RPL29P7-201ENST00000440227 457 ntBASIC5.83□□□□□ -1.48
NKX3-1Q99801 VN1R96P-201ENST00000446052 858 ntBASIC5.83□□□□□ -1.48
NKX3-1Q99801 LINC01831-201ENST00000449772 493 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
NKX3-1Q99801 TREML3P-201ENST00000457327 501 ntBASIC5.83□□□□□ -1.48
NKX3-1Q99801 RPL5P12-201ENST00000477071 851 ntBASIC5.83□□□□□ -1.48
NKX3-1Q99801 SSR1-206ENST00000479365 1118 ntTSL 5 BASIC5.83□□□□□ -1.48
NKX3-1Q99801 RPL23AP80-201ENST00000495605 424 ntBASIC5.83□□□□□ -1.48
NKX3-1Q99801 AC117500.1-201ENST00000497352 755 ntBASIC5.83□□□□□ -1.48
NKX3-1Q99801 GBA3-201ENST00000503442 1232 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
NKX3-1Q99801 AC093325.1-201ENST00000508378 326 ntBASIC5.83□□□□□ -1.48
NKX3-1Q99801 SPINK9-202ENST00000511717 604 ntAPPRIS ALT2 TSL 5 BASIC5.83□□□□□ -1.48
NKX3-1Q99801 IQCH-203ENST00000512104 1000 ntTSL 2 BASIC5.83□□□□□ -1.48
NKX3-1Q99801 EGFLAM-211ENST00000514476 676 ntTSL 2 BASIC5.83□□□□□ -1.48
NKX3-1Q99801 KCNU1-202ENST00000518904 334 ntTSL 2 BASIC5.83□□□□□ -1.48
NKX3-1Q99801 FBXO16-208ENST00000519471 398 ntTSL 2 BASIC5.83□□□□□ -1.48
NKX3-1Q99801 OR5M6P-201ENST00000530227 937 ntBASIC5.83□□□□□ -1.48
NKX3-1Q99801 PHBP2-201ENST00000532859 806 ntBASIC5.83□□□□□ -1.48
NKX3-1Q99801 OR7E161P-201ENST00000533722 967 ntBASIC5.83□□□□□ -1.48
NKX3-1Q99801 AC156455.1-201ENST00000538790 851 ntTSL 2 BASIC5.83□□□□□ -1.48
NKX3-1Q99801 AC022509.1-203ENST00000541940 708 ntTSL 4 BASIC5.83□□□□□ -1.48
NKX3-1Q99801 AC027667.1-201ENST00000545814 304 ntBASIC5.83□□□□□ -1.48
NKX3-1Q99801 ST20-203ENST00000562759 694 ntAPPRIS P1 TSL 2 BASIC5.83□□□□□ -1.48
NKX3-1Q99801 AC004232.1-201ENST00000571388 208 ntBASIC5.83□□□□□ -1.48
NKX3-1Q99801 OR7A8P-201ENST00000595427 913 ntBASIC5.83□□□□□ -1.48
NKX3-1Q99801 ZNF415-218ENST00000599261 601 ntTSL 3 BASIC5.83□□□□□ -1.48
NKX3-1Q99801 AC244196.4-201ENST00000611787 392 ntAPPRIS P1 BASIC5.83□□□□□ -1.48
NKX3-1Q99801 MIR8082-201ENST00000612488 81 ntBASIC5.83□□□□□ -1.48
NKX3-1Q99801 Metazoa_SRP.195-201ENST00000612667 287 ntBASIC5.83□□□□□ -1.48
NKX3-1Q99801 AC009283.1-201ENST00000615852 645 ntBASIC5.83□□□□□ -1.48
NKX3-1Q99801 CASC22-202ENST00000628396 802 ntTSL 5 BASIC5.83□□□□□ -1.48
NKX3-1Q99801 AL513283.1-203ENST00000640010 891 ntTSL 5 BASIC5.83□□□□□ -1.48
NKX3-1Q99801 MCTP2-208ENST00000557742 1957 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
NKX3-1Q99801 PGBD4-201ENST00000397766 6612 ntAPPRIS P1 BASIC5.83□□□□□ -1.48
NKX3-1Q99801 SLC4A4-202ENST00000340595 7640 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
NKX3-1Q99801 FRK-201ENST00000606080 13230 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
NKX3-1Q99801 AXDND1-201ENST00000367618 3642 ntAPPRIS P2 TSL 1 (best) BASIC5.83□□□□□ -1.48
NKX3-1Q99801 GTDC1-204ENST00000392869 10514 ntAPPRIS P1 TSL 5 BASIC5.83□□□□□ -1.48
NKX3-1Q99801 USP46-202ENST00000451218 4622 ntTSL 5 BASIC5.83□□□□□ -1.48
Retrieved 100 of 98,524 protein–RNA pairs in 121.3 ms