Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 STARD4-AS1-201ENST00000500779 5525 ntTSL 1 (best) BASIC8.33□□□□□ -1.08
HMGB1P09429 NRCAM-201ENST00000351718 6228 ntAPPRIS P3 TSL 1 (best) BASIC8.33□□□□□ -1.08
HMGB1P09429 BPIFC-203ENST00000397452 2091 ntAPPRIS P1 TSL 5 BASIC8.33□□□□□ -1.08
HMGB1P09429 ZNF14-201ENST00000344099 2949 ntAPPRIS P1 TSL 1 (best) BASIC8.33□□□□□ -1.08
HMGB1P09429 MOB4-201ENST00000233892 3785 ntTSL 1 (best) BASIC8.33□□□□□ -1.08
HMGB1P09429 MAPRE2-203ENST00000436190 4323 ntTSL 2 BASIC8.33□□□□□ -1.08
HMGB1P09429 CBWD6-203ENST00000456520 1608 ntTSL 1 (best) BASIC8.32□□□□□ -1.08
HMGB1P09429 LRRC37B-201ENST00000327564 3162 ntAPPRIS ALT2 TSL 1 (best) BASIC8.32□□□□□ -1.08
HMGB1P09429 SLC2A3P2-201ENST00000331747 1480 ntBASIC8.32□□□□□ -1.08
HMGB1P09429 GPR1-209ENST00000612892 2565 ntAPPRIS P1 TSL 4 BASIC8.32□□□□□ -1.08
HMGB1P09429 GSTCD-202ENST00000394728 2416 ntAPPRIS P1 TSL 5 BASIC8.32□□□□□ -1.08
HMGB1P09429 HAVCR1-204ENST00000522693 1713 ntAPPRIS ALT2 TSL 2 BASIC8.32□□□□□ -1.08
HMGB1P09429 RPS29-202ENST00000396020 7062 ntTSL 1 (best) BASIC8.32□□□□□ -1.08
HMGB1P09429 GREM1-203ENST00000622074 14606 ntAPPRIS P1 TSL 1 (best) BASIC8.32□□□□□ -1.08
HMGB1P09429 ITCH-201ENST00000262650 3089 ntTSL 1 (best) BASIC8.32□□□□□ -1.08
HMGB1P09429 SEC31A-207ENST00000443462 4042 ntTSL 2 BASIC8.32□□□□□ -1.08
HMGB1P09429 CYP2C8-212ENST00000623108 1962 ntTSL 2 BASIC8.32□□□□□ -1.08
HMGB1P09429 ATP5S-202ENST00000311459 10212 ntAPPRIS P1 TSL 1 (best) BASIC8.32□□□□□ -1.08
HMGB1P09429 PAGE4-201ENST00000218068 499 ntAPPRIS P1 TSL 1 (best) BASIC8.32□□□□□ -1.08
HMGB1P09429 AC023886.2-201ENST00000321285 411 ntBASIC8.32□□□□□ -1.08
HMGB1P09429 OR6C74-201ENST00000343870 1105 ntAPPRIS P1 BASIC8.32□□□□□ -1.08
HMGB1P09429 CLEC4A-202ENST00000345999 841 ntTSL 5 BASIC8.32□□□□□ -1.08
HMGB1P09429 RNU6-249P-201ENST00000363016 102 ntBASIC8.32□□□□□ -1.08
HMGB1P09429 MIR205HG-201ENST00000366437 704 ntTSL 3 BASIC8.32□□□□□ -1.08
HMGB1P09429 DEFB121-202ENST00000376314 389 ntAPPRIS P1 TSL 1 (best) BASIC8.32□□□□□ -1.08
HMGB1P09429 LINC00362-201ENST00000414345 264 ntTSL 2 BASIC8.32□□□□□ -1.08
HMGB1P09429 CLCN3P1-201ENST00000423965 1017 ntBASIC8.32□□□□□ -1.08
HMGB1P09429 LINC00390-201ENST00000432331 340 ntTSL 5 BASIC8.32□□□□□ -1.08
HMGB1P09429 AC087501.1-201ENST00000445617 715 ntTSL 5 BASIC8.32□□□□□ -1.08
HMGB1P09429 AC108463.2-201ENST00000451230 412 ntTSL 5 BASIC8.32□□□□□ -1.08
HMGB1P09429 MTND3P4-201ENST00000453537 303 ntBASIC8.32□□□□□ -1.08
HMGB1P09429 HNRNPDLP3-201ENST00000456745 380 ntBASIC8.32□□□□□ -1.08
HMGB1P09429 CAMTA1-205ENST00000467404 546 ntTSL 3 BASIC8.32□□□□□ -1.08
HMGB1P09429 TMEM161B-AS1-208ENST00000507736 630 ntTSL 3 BASIC8.32□□□□□ -1.08
HMGB1P09429 ENPP7P3-201ENST00000509123 241 ntBASIC8.32□□□□□ -1.08
HMGB1P09429 NEDD8-203ENST00000524927 653 ntTSL 2 BASIC8.32□□□□□ -1.08
HMGB1P09429 MIR4675-201ENST00000577898 77 ntBASIC8.32□□□□□ -1.08
HMGB1P09429 MIR4685-201ENST00000578185 69 ntBASIC8.32□□□□□ -1.08
HMGB1P09429 AP000897.2-201ENST00000579509 1057 ntTSL 3 BASIC8.32□□□□□ -1.08
HMGB1P09429 PSMG2-204ENST00000585331 983 ntTSL 1 (best) BASIC8.32□□□□□ -1.08
HMGB1P09429 ZNF397-211ENST00000592264 1104 ntTSL 3 BASIC8.32□□□□□ -1.08
HMGB1P09429 AC100814.1-201ENST00000606963 623 ntBASIC8.32□□□□□ -1.08
HMGB1P09429 PCBP1-AS1-359ENST00000630283 1063 ntTSL 5 BASIC8.32□□□□□ -1.08
HMGB1P09429 CCDC196-207ENST00000636229 1107 ntAPPRIS P1 TSL 5 BASIC8.32□□□□□ -1.08
HMGB1P09429 LPAR1-205ENST00000541779 2490 ntAPPRIS ALT1 TSL 1 (best) BASIC8.32□□□□□ -1.08
HMGB1P09429 FOCAD-216ENST00000605086 4195 ntTSL 1 (best) BASIC8.32□□□□□ -1.08
HMGB1P09429 AIG1-209ENST00000629020 3636 ntTSL 2 BASIC8.32□□□□□ -1.08
HMGB1P09429 SPATA31C1-201ENST00000420021 3895 ntBASIC8.32□□□□□ -1.08
HMGB1P09429 ZNF532-214ENST00000589288 5585 ntAPPRIS P1 TSL 5 BASIC8.32□□□□□ -1.08
HMGB1P09429 FAM19A1-201ENST00000478136 2014 ntAPPRIS P1 TSL 1 (best) BASIC8.32□□□□□ -1.08
HMGB1P09429 SORBS1-202ENST00000306402 5858 ntAPPRIS ALT2 TSL 1 (best) BASIC8.32□□□□□ -1.08
HMGB1P09429 ZNF23-207ENST00000564528 3020 ntAPPRIS ALT2 TSL 2 BASIC8.32□□□□□ -1.08
HMGB1P09429 SETDB1-205ENST00000368969 4370 ntAPPRIS P3 TSL 1 (best) BASIC8.31□□□□□ -1.08
HMGB1P09429 H3F3A-201ENST00000366813 1308 ntAPPRIS P1 TSL 1 (best) BASIC8.31□□□□□ -1.08
HMGB1P09429 MORC3-201ENST00000400485 4246 ntAPPRIS P1 TSL 1 (best) BASIC8.31□□□□□ -1.08
HMGB1P09429 BMPR1B-201ENST00000264568 1807 ntAPPRIS P1 TSL 2 BASIC8.31□□□□□ -1.08
HMGB1P09429 KCNQ3-205ENST00000621976 10659 ntAPPRIS ALT2 TSL 5 BASIC8.31□□□□□ -1.08
HMGB1P09429 SNX25-207ENST00000618785 3151 ntTSL 5 BASIC8.31□□□□□ -1.08
HMGB1P09429 FGF10-201ENST00000264664 2193 ntAPPRIS P1 TSL 1 (best) BASIC8.31□□□□□ -1.08
HMGB1P09429 AC007485.2-201ENST00000623493 1667 ntBASIC8.31□□□□□ -1.08
HMGB1P09429 NPIPB15-201ENST00000429990 1428 ntAPPRIS P1 TSL 5 BASIC8.31□□□□□ -1.08
HMGB1P09429 EIF4G2-208ENST00000526148 4001 ntAPPRIS ALT2 TSL 1 (best) BASIC8.31□□□□□ -1.08
HMGB1P09429 AC034111.1-201ENST00000562143 3770 ntBASIC8.31□□□□□ -1.08
HMGB1P09429 TRIM6-TRIM34-201ENST00000354852 3391 ntAPPRIS P1 TSL 2 BASIC8.31□□□□□ -1.08
HMGB1P09429 PEX13-201ENST00000295030 4470 ntAPPRIS P1 TSL 1 (best) BASIC8.31□□□□□ -1.08
HMGB1P09429 MED12L-206ENST00000474524 10744 ntAPPRIS P2 TSL 1 (best) BASIC8.31□□□□□ -1.08
HMGB1P09429 NRCAM-205ENST00000413765 6406 ntTSL 2 BASIC8.31□□□□□ -1.08
HMGB1P09429 CEP97-206ENST00000494050 2870 ntAPPRIS ALT2 TSL 2 BASIC8.31□□□□□ -1.08
HMGB1P09429 FBXW7-201ENST00000263981 3743 ntAPPRIS ALT1 TSL 1 (best) BASIC8.31□□□□□ -1.08
HMGB1P09429 MTMR8-201ENST00000374852 2639 ntAPPRIS P1 TSL 1 (best) BASIC8.31□□□□□ -1.08
HMGB1P09429 BZW1-203ENST00000409600 6875 ntAPPRIS P1 TSL 1 (best) BASIC8.31□□□□□ -1.08
HMGB1P09429 RNU1-146P-201ENST00000364015 165 ntBASIC8.31□□□□□ -1.08
HMGB1P09429 AL591503.1-201ENST00000366224 477 ntTSL 5 BASIC8.31□□□□□ -1.08
HMGB1P09429 PFKFB1-201ENST00000374992 1156 ntTSL 1 (best) BASIC8.31□□□□□ -1.08
HMGB1P09429 AL583805.2-201ENST00000418571 486 ntTSL 5 BASIC8.31□□□□□ -1.08
HMGB1P09429 AC016716.2-201ENST00000418621 486 ntTSL 3 BASIC8.31□□□□□ -1.08
HMGB1P09429 AC104076.1-201ENST00000428080 265 ntTSL 3 BASIC8.31□□□□□ -1.08
HMGB1P09429 LSM3P3-201ENST00000436601 306 ntBASIC8.31□□□□□ -1.08
HMGB1P09429 AL512637.1-201ENST00000439523 1231 ntBASIC8.31□□□□□ -1.08
HMGB1P09429 AC092421.1-201ENST00000448148 418 ntBASIC8.31□□□□□ -1.08
HMGB1P09429 AL391422.2-202ENST00000454396 347 ntTSL 5 BASIC8.31□□□□□ -1.08
HMGB1P09429 AL450344.1-201ENST00000456018 639 ntTSL 2 BASIC8.31□□□□□ -1.08
HMGB1P09429 EIF2S2P4-201ENST00000461070 984 ntBASIC8.31□□□□□ -1.08
HMGB1P09429 RPSAP39-201ENST00000467439 883 ntBASIC8.31□□□□□ -1.08
HMGB1P09429 AL591122.1-201ENST00000487348 492 ntBASIC8.31□□□□□ -1.08
HMGB1P09429 AC008770.1-202ENST00000495324 516 ntTSL 2 BASIC8.31□□□□□ -1.08
HMGB1P09429 AC026782.2-201ENST00000510845 636 ntBASIC8.31□□□□□ -1.08
HMGB1P09429 AC104109.4-202ENST00000518409 1082 ntTSL 2 BASIC8.31□□□□□ -1.08
HMGB1P09429 OXR1-212ENST00000521592 993 ntTSL 5 BASIC8.31□□□□□ -1.08
HMGB1P09429 AC026979.2-201ENST00000523733 583 ntTSL 5 BASIC8.31□□□□□ -1.08
HMGB1P09429 OR9L1P-201ENST00000529493 933 ntBASIC8.31□□□□□ -1.08
HMGB1P09429 AL035078.1-201ENST00000531962 820 ntTSL 5 BASIC8.31□□□□□ -1.08
HMGB1P09429 AC078950.1-201ENST00000538349 550 ntTSL 4 BASIC8.31□□□□□ -1.08
HMGB1P09429 AC090673.2-201ENST00000544279 454 ntTSL 3 BASIC8.31□□□□□ -1.08
HMGB1P09429 AC079362.1-202ENST00000547089 278 ntTSL 3 BASIC8.31□□□□□ -1.08
HMGB1P09429 AC074029.2-201ENST00000551045 634 ntBASIC8.31□□□□□ -1.08
HMGB1P09429 MEG8-217ENST00000556637 924 ntTSL 5 BASIC8.31□□□□□ -1.08
HMGB1P09429 AC022898.1-202ENST00000560864 806 ntTSL 2 BASIC8.31□□□□□ -1.08
HMGB1P09429 SNURF-202ENST00000577949 650 ntAPPRIS P1 TSL 2 BASIC8.31□□□□□ -1.08
HMGB1P09429 MIR1273F-201ENST00000580581 99 ntBASIC8.31□□□□□ -1.08
Retrieved 100 of 98,524 protein–RNA pairs in 72.4 ms