Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 AL593856.1-201ENST00000419949 805 ntBASIC7.17□□□□□ -1.26
USP39Q53GS9 HMGB1P32-201ENST00000425971 565 ntBASIC7.17□□□□□ -1.26
USP39Q53GS9 AL596268.1-201ENST00000427910 1048 ntBASIC7.17□□□□□ -1.26
USP39Q53GS9 GAPDHP19-201ENST00000431768 1005 ntBASIC7.17□□□□□ -1.26
USP39Q53GS9 LINC01918-202ENST00000438148 415 ntTSL 3 BASIC7.17□□□□□ -1.26
USP39Q53GS9 AL136460.1-201ENST00000442389 473 ntTSL 3 BASIC7.17□□□□□ -1.26
USP39Q53GS9 AL772337.3-201ENST00000447524 452 ntTSL 3 BASIC7.17□□□□□ -1.26
USP39Q53GS9 AC133965.1-201ENST00000452984 354 ntBASIC7.17□□□□□ -1.26
USP39Q53GS9 AC138035.1-201ENST00000499986 992 ntTSL 5 BASIC7.17□□□□□ -1.26
USP39Q53GS9 AC098487.1-203ENST00000512915 546 ntTSL 5 BASIC7.17□□□□□ -1.26
USP39Q53GS9 RNU6ATAC39P-201ENST00000516309 149 ntBASIC7.17□□□□□ -1.26
USP39Q53GS9 AP005902.2-201ENST00000518393 307 ntBASIC7.17□□□□□ -1.26
USP39Q53GS9 CASC11-203ENST00000519071 791 ntTSL 3 BASIC7.17□□□□□ -1.26
USP39Q53GS9 AP003696.1-201ENST00000519337 770 ntTSL 3 BASIC7.17□□□□□ -1.26
USP39Q53GS9 ACER3-213ENST00000533873 929 ntTSL 2 BASIC7.17□□□□□ -1.26
USP39Q53GS9 PATE4-203ENST00000534411 897 ntAPPRIS ALT2 TSL 1 (best) BASIC7.17□□□□□ -1.26
USP39Q53GS9 AC006065.4-204ENST00000537478 654 ntTSL 2 BASIC7.17□□□□□ -1.26
USP39Q53GS9 LRTOMT-215ENST00000538478 814 ntTSL 2 BASIC7.17□□□□□ -1.26
USP39Q53GS9 AC006065.4-203ENST00000541065 526 ntTSL 2 BASIC7.17□□□□□ -1.26
USP39Q53GS9 WBP2NL-210ENST00000543212 1001 ntAPPRIS ALT2 TSL 1 (best) BASIC7.17□□□□□ -1.26
USP39Q53GS9 AC119044.1-202ENST00000548463 339 ntTSL 2 BASIC7.17□□□□□ -1.26
USP39Q53GS9 MTND1P24-201ENST00000552175 861 ntBASIC7.17□□□□□ -1.26
USP39Q53GS9 AC023310.2-201ENST00000553844 547 ntBASIC7.17□□□□□ -1.26
USP39Q53GS9 PSMA3-AS1-206ENST00000555037 446 ntTSL 1 (best) BASIC7.17□□□□□ -1.26
USP39Q53GS9 AL132640.1-201ENST00000559594 619 ntBASIC7.17□□□□□ -1.26
USP39Q53GS9 AC015853.3-201ENST00000570974 478 ntTSL 4 BASIC7.17□□□□□ -1.26
USP39Q53GS9 MTND2P13-201ENST00000577438 1039 ntBASIC7.17□□□□□ -1.26
USP39Q53GS9 WBP1LP11-201ENST00000586141 328 ntBASIC7.17□□□□□ -1.26
USP39Q53GS9 ZNF569-205ENST00000589833 762 ntTSL 3 BASIC7.17□□□□□ -1.26
USP39Q53GS9 BNIP3P19-201ENST00000605397 577 ntBASIC7.17□□□□□ -1.26
USP39Q53GS9 AL137000.1-201ENST00000610528 1244 ntBASIC7.17□□□□□ -1.26
USP39Q53GS9 EAPP-205ENST00000618169 1237 ntTSL 5 BASIC7.17□□□□□ -1.26
USP39Q53GS9 AL049777.1-201ENST00000622740 518 ntBASIC7.17□□□□□ -1.26
USP39Q53GS9 AP003485.1-201ENST00000625093 753 ntBASIC7.17□□□□□ -1.26
USP39Q53GS9 OR4G3P-201ENST00000633500 913 ntBASIC7.17□□□□□ -1.26
USP39Q53GS9 GABRA2-215ENST00000540012 2588 ntTSL 5 BASIC7.17□□□□□ -1.26
USP39Q53GS9 KDM4C-205ENST00000428870 3039 ntTSL 2 BASIC7.17□□□□□ -1.26
USP39Q53GS9 PDE11A-212ENST00000358450 3489 ntAPPRIS P1 TSL 1 (best) BASIC7.17□□□□□ -1.26
USP39Q53GS9 ZG16-201ENST00000400752 3132 ntAPPRIS P1 TSL 1 (best) BASIC7.17□□□□□ -1.26
USP39Q53GS9 SLC35F1-202ENST00000621341 4481 ntAPPRIS ALT2 TSL 5 BASIC7.17□□□□□ -1.26
USP39Q53GS9 ZNF33B-201ENST00000359467 5958 ntAPPRIS P2 TSL 1 (best) BASIC7.17□□□□□ -1.26
USP39Q53GS9 ZMYND11-215ENST00000558098 1859 ntTSL 1 (best) BASIC7.17□□□□□ -1.26
USP39Q53GS9 ASAH1-267ENST00000637991 2399 ntTSL 5 BASIC7.17□□□□□ -1.26
USP39Q53GS9 BRD7P1-201ENST00000557705 1915 ntBASIC7.17□□□□□ -1.26
USP39Q53GS9 AL139039.3-201ENST00000413129 1475 ntTSL 1 (best) BASIC7.17□□□□□ -1.26
USP39Q53GS9 MKI67P1-201ENST00000604297 1460 ntBASIC7.17□□□□□ -1.26
USP39Q53GS9 PHLDB2-202ENST00000393925 5543 ntAPPRIS P1 TSL 1 (best) BASIC7.17□□□□□ -1.26
USP39Q53GS9 ZYG11B-201ENST00000294353 8093 ntAPPRIS P1 TSL 1 (best) BASIC7.17□□□□□ -1.26
USP39Q53GS9 PSG2-202ENST00000406487 1538 ntAPPRIS P1 TSL 1 (best) BASIC7.17□□□□□ -1.26
USP39Q53GS9 AL592494.2-201ENST00000425455 1548 ntBASIC7.17□□□□□ -1.26
USP39Q53GS9 CD163-209ENST00000541972 3590 ntAPPRIS ALT2 TSL 5 BASIC7.16□□□□□ -1.26
USP39Q53GS9 NXF2B-205ENST00000618881 3193 ntTSL 2 BASIC7.16□□□□□ -1.26
USP39Q53GS9 SOX6-208ENST00000527619 2699 ntAPPRIS ALT2 TSL 1 (best) BASIC7.16□□□□□ -1.26
USP39Q53GS9 PAQR5-201ENST00000340965 4943 ntAPPRIS P1 TSL 1 (best) BASIC7.16□□□□□ -1.26
USP39Q53GS9 NT5C3A-201ENST00000242210 1670 ntTSL 1 (best) BASIC7.16□□□□□ -1.26
USP39Q53GS9 CCDC77-210ENST00000540180 1652 ntAPPRIS ALT2 TSL 2 BASIC7.16□□□□□ -1.26
USP39Q53GS9 ADAMTS3-204ENST00000622135 4479 ntAPPRIS P1 TSL 2 BASIC7.16□□□□□ -1.26
USP39Q53GS9 CPS1-203ENST00000430249 5698 ntTSL 1 (best) BASIC7.16□□□□□ -1.26
USP39Q53GS9 ZNF585A-201ENST00000292841 8618 ntAPPRIS P1 TSL 1 (best) BASIC7.16□□□□□ -1.26
USP39Q53GS9 AC004690.2-201ENST00000472838 1754 ntTSL 1 (best) BASIC7.16□□□□□ -1.26
USP39Q53GS9 STS-201ENST00000217961 6521 ntAPPRIS P1 TSL 1 (best) BASIC7.16□□□□□ -1.26
USP39Q53GS9 AC126323.2-201ENST00000559985 2369 ntTSL 5 BASIC7.16□□□□□ -1.26
USP39Q53GS9 AL133320.1-201ENST00000621423 2352 ntBASIC7.16□□□□□ -1.26
USP39Q53GS9 PLD5-203ENST00000427495 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC7.16□□□□□ -1.26
USP39Q53GS9 ELOC-201ENST00000284811 683 ntAPPRIS P1 TSL 3 BASIC7.16□□□□□ -1.26
USP39Q53GS9 OR4K1-201ENST00000285600 1076 ntAPPRIS P1 BASIC7.16□□□□□ -1.26
USP39Q53GS9 RPL24P4-201ENST00000326586 421 ntBASIC7.16□□□□□ -1.26
USP39Q53GS9 BCL2A1-202ENST00000335661 809 ntTSL 1 (best) BASIC7.16□□□□□ -1.26
USP39Q53GS9 MRAP-202ENST00000339944 440 ntAPPRIS ALT2 TSL 1 (best) BASIC7.16□□□□□ -1.26
USP39Q53GS9 RNA5SP152-201ENST00000365184 110 ntBASIC7.16□□□□□ -1.26
USP39Q53GS9 TRBV28-201ENST00000390400 364 ntAPPRIS P1 BASIC7.16□□□□□ -1.26
USP39Q53GS9 CNN3P1-201ENST00000401596 935 ntBASIC7.16□□□□□ -1.26
USP39Q53GS9 RN7SKP91-201ENST00000410852 288 ntBASIC7.16□□□□□ -1.26
USP39Q53GS9 MTND6P1-201ENST00000417434 424 ntBASIC7.16□□□□□ -1.26
USP39Q53GS9 AL161640.1-201ENST00000429507 390 ntTSL 2 BASIC7.16□□□□□ -1.26
USP39Q53GS9 AC211433.1-202ENST00000434256 1187 ntTSL 1 (best) BASIC7.16□□□□□ -1.26
USP39Q53GS9 AC083855.1-201ENST00000440041 258 ntBASIC7.16□□□□□ -1.26
USP39Q53GS9 LIX1L-AS1-207ENST00000448561 347 ntTSL 3 BASIC7.16□□□□□ -1.26
USP39Q53GS9 AC099670.1-201ENST00000455141 783 ntBASIC7.16□□□□□ -1.26
USP39Q53GS9 AC067817.2-201ENST00000459965 387 ntTSL 3 BASIC7.16□□□□□ -1.26
USP39Q53GS9 LINC02066-201ENST00000492731 580 ntTSL 4 BASIC7.16□□□□□ -1.26
USP39Q53GS9 AC008967.1-201ENST00000504843 163 ntBASIC7.16□□□□□ -1.26
USP39Q53GS9 RN7SKP70-201ENST00000516655 271 ntBASIC7.16□□□□□ -1.26
USP39Q53GS9 FBXO16-207ENST00000518734 995 ntAPPRIS ALT2 TSL 1 (best) BASIC7.16□□□□□ -1.26
USP39Q53GS9 IGLVI-42-201ENST00000522485 381 ntBASIC7.16□□□□□ -1.26
USP39Q53GS9 AP003033.2-201ENST00000528901 805 ntBASIC7.16□□□□□ -1.26
USP39Q53GS9 AP000593.3-201ENST00000546065 578 ntTSL 2 BASIC7.16□□□□□ -1.26
USP39Q53GS9 TWF1-207ENST00000548315 1170 ntTSL 1 (best) BASIC7.16□□□□□ -1.26
USP39Q53GS9 AC116903.1-201ENST00000557683 539 ntTSL 4 BASIC7.16□□□□□ -1.26
USP39Q53GS9 HNRNPA1P71-201ENST00000559135 950 ntBASIC7.16□□□□□ -1.26
USP39Q53GS9 MTCYBP28-201ENST00000566728 1132 ntBASIC7.16□□□□□ -1.26
USP39Q53GS9 AC005412.1-201ENST00000580812 1049 ntBASIC7.16□□□□□ -1.26
USP39Q53GS9 AL390877.1-201ENST00000605704 214 ntBASIC7.16□□□□□ -1.26
USP39Q53GS9 AL359091.2-201ENST00000609303 556 ntBASIC7.16□□□□□ -1.26
USP39Q53GS9 AL512506.1-201ENST00000613918 449 ntBASIC7.16□□□□□ -1.26
USP39Q53GS9 MRPL57P3-201ENST00000619218 176 ntBASIC7.16□□□□□ -1.26
USP39Q53GS9 AC244517.6-202ENST00000623884 566 ntAPPRIS P1 TSL 4 BASIC7.16□□□□□ -1.26
USP39Q53GS9 AC010872.1-201ENST00000624225 675 ntBASIC7.16□□□□□ -1.26
USP39Q53GS9 AL132796.3-201ENST00000624703 900 ntBASIC7.16□□□□□ -1.26
USP39Q53GS9 RMDN2-AS1-207ENST00000627614 765 ntTSL 5 BASIC7.16□□□□□ -1.26
Retrieved 100 of 98,524 protein–RNA pairs in 94.5 ms