Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 PHC3-203ENST00000467570 2595 ntTSL 2 BASIC5.14□□□□□ -1.59
HLA-DMBP28068 PIGN-207ENST00000586566 3891 ntTSL 5 BASIC5.14□□□□□ -1.59
HLA-DMBP28068 DLEU2L-201ENST00000371086 3555 ntBASIC5.14□□□□□ -1.59
HLA-DMBP28068 C2CD6-203ENST00000439802 1639 ntAPPRIS ALT2 TSL 2 BASIC5.14□□□□□ -1.59
HLA-DMBP28068 HMG20A-201ENST00000336216 4046 ntAPPRIS P1 TSL 1 (best) BASIC5.14□□□□□ -1.59
HLA-DMBP28068 OFD1P17-201ENST00000437639 3018 ntBASIC5.14□□□□□ -1.59
HLA-DMBP28068 ZEB2-244ENST00000638007 9140 ntTSL 5 BASIC5.14□□□□□ -1.59
HLA-DMBP28068 CNIH1-201ENST00000216416 4793 ntAPPRIS P2 TSL 1 (best) BASIC5.14□□□□□ -1.59
HLA-DMBP28068 CX3CR1-202ENST00000399220 3106 ntAPPRIS P1 TSL 1 (best) BASIC5.14□□□□□ -1.59
HLA-DMBP28068 ADAL-203ENST00000428046 3514 ntTSL 2 BASIC5.14□□□□□ -1.59
HLA-DMBP28068 NXF2B-205ENST00000618881 3193 ntTSL 2 BASIC5.14□□□□□ -1.59
HLA-DMBP28068 C5orf24-201ENST00000338051 4270 ntAPPRIS P1 TSL 1 (best) BASIC5.14□□□□□ -1.59
HLA-DMBP28068 FAM13A-AS1-201ENST00000500765 3210 ntTSL 2 BASIC5.14□□□□□ -1.59
HLA-DMBP28068 TM9SF4-202ENST00000398022 3978 ntAPPRIS P1 TSL 1 (best) BASIC5.14□□□□□ -1.59
HLA-DMBP28068 TLK2-214ENST00000582809 3608 ntTSL 1 (best) BASIC5.14□□□□□ -1.59
HLA-DMBP28068 LRRC49-204ENST00000544974 6605 ntTSL 2 BASIC5.13□□□□□ -1.59
HLA-DMBP28068 MAT2B-201ENST00000280969 2226 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
HLA-DMBP28068 CEP85L-204ENST00000392500 1872 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
HLA-DMBP28068 AC018765.1-201ENST00000623357 3446 ntBASIC5.13□□□□□ -1.59
HLA-DMBP28068 AC036214.3-201ENST00000522938 1527 ntAPPRIS P1 TSL 2 BASIC5.13□□□□□ -1.59
HLA-DMBP28068 VEZF1-204ENST00000584396 2342 ntAPPRIS ALT2 TSL 5 BASIC5.13□□□□□ -1.59
HLA-DMBP28068 AL512329.1-201ENST00000404600 1592 ntBASIC5.13□□□□□ -1.59
HLA-DMBP28068 BDNF-203ENST00000395978 3988 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
HLA-DMBP28068 ELMOD2-201ENST00000323570 4409 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
HLA-DMBP28068 SORCS1-209ENST00000612154 6862 ntTSL 5 BASIC5.13□□□□□ -1.59
HLA-DMBP28068 LGSN-204ENST00000622415 1612 ntTSL 2 BASIC5.13□□□□□ -1.59
HLA-DMBP28068 RNF146-215ENST00000616343 2077 ntAPPRIS ALT1 TSL 5 BASIC5.13□□□□□ -1.59
HLA-DMBP28068 NUP210L-201ENST00000271854 5424 ntAPPRIS ALT2 TSL 5 BASIC5.13□□□□□ -1.59
HLA-DMBP28068 MOB4-201ENST00000233892 3785 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
HLA-DMBP28068 PTER-202ENST00000378000 3777 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
HLA-DMBP28068 ZNF528-203ENST00000391788 4209 ntTSL 2 BASIC5.13□□□□□ -1.59
HLA-DMBP28068 PLCZ1-201ENST00000266505 2148 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
HLA-DMBP28068 HESX1-201ENST00000295934 981 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
HLA-DMBP28068 OR2M1P-201ENST00000318104 951 ntBASIC5.13□□□□□ -1.59
HLA-DMBP28068 MYL1-201ENST00000341685 870 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
HLA-DMBP28068 IGFL2-201ENST00000377693 607 ntAPPRIS ALT2 TSL 1 (best) BASIC5.13□□□□□ -1.59
HLA-DMBP28068 SMPX-201ENST00000379494 938 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
HLA-DMBP28068 AL451061.1-201ENST00000407887 862 ntBASIC5.13□□□□□ -1.59
HLA-DMBP28068 AL157932.1-201ENST00000413246 363 ntTSL 3 BASIC5.13□□□□□ -1.59
HLA-DMBP28068 AC019130.1-201ENST00000413841 391 ntTSL 2 BASIC5.13□□□□□ -1.59
HLA-DMBP28068 AC009743.1-201ENST00000415774 610 ntTSL 5 BASIC5.13□□□□□ -1.59
HLA-DMBP28068 AL451164.1-201ENST00000417149 390 ntTSL 3 BASIC5.13□□□□□ -1.59
HLA-DMBP28068 AL359382.1-201ENST00000417838 426 ntTSL 5 BASIC5.13□□□□□ -1.59
HLA-DMBP28068 AC011753.2-201ENST00000425576 610 ntTSL 5 BASIC5.13□□□□□ -1.59
HLA-DMBP28068 LINC01291-203ENST00000435984 565 ntTSL 3 BASIC5.13□□□□□ -1.59
HLA-DMBP28068 AL138921.1-201ENST00000444359 846 ntTSL 5 BASIC5.13□□□□□ -1.59
HLA-DMBP28068 AL356133.1-201ENST00000444762 372 ntBASIC5.13□□□□□ -1.59
HLA-DMBP28068 AC003035.2-201ENST00000448948 696 ntTSL 3 BASIC5.13□□□□□ -1.59
HLA-DMBP28068 LINC00483-203ENST00000450727 686 ntTSL 3 BASIC5.13□□□□□ -1.59
HLA-DMBP28068 LINC01839-201ENST00000451348 727 ntTSL 3 BASIC5.13□□□□□ -1.59
HLA-DMBP28068 MEF2AP1-201ENST00000454867 863 ntBASIC5.13□□□□□ -1.59
HLA-DMBP28068 STARD13-IT1-201ENST00000456087 452 ntTSL 5 BASIC5.13□□□□□ -1.59
HLA-DMBP28068 SRP68P2-201ENST00000456184 254 ntBASIC5.13□□□□□ -1.59
HLA-DMBP28068 AC012158.1-202ENST00000482431 1132 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
HLA-DMBP28068 AC068522.1-201ENST00000482895 345 ntBASIC5.13□□□□□ -1.59
HLA-DMBP28068 AC010655.2-201ENST00000493710 662 ntTSL 3 BASIC5.13□□□□□ -1.59
HLA-DMBP28068 RPL10P7-201ENST00000495649 625 ntBASIC5.13□□□□□ -1.59
HLA-DMBP28068 AC093766.1-201ENST00000502606 866 ntTSL 3 BASIC5.13□□□□□ -1.59
HLA-DMBP28068 AC107952.1-201ENST00000524200 376 ntBASIC5.13□□□□□ -1.59
HLA-DMBP28068 AC090193.1-202ENST00000524355 566 ntTSL 4 BASIC5.13□□□□□ -1.59
HLA-DMBP28068 LINC01559-203ENST00000531049 683 ntTSL 3 BASIC5.13□□□□□ -1.59
HLA-DMBP28068 AC022509.1-203ENST00000541940 708 ntTSL 4 BASIC5.13□□□□□ -1.59
HLA-DMBP28068 KLRD1-209ENST00000543420 802 ntTSL 5 BASIC5.13□□□□□ -1.59
HLA-DMBP28068 AC108449.2-201ENST00000560865 552 ntTSL 3 BASIC5.13□□□□□ -1.59
HLA-DMBP28068 IQCK-206ENST00000564186 882 ntAPPRIS ALT2 TSL 2 BASIC5.13□□□□□ -1.59
HLA-DMBP28068 AC004232.1-201ENST00000571388 208 ntBASIC5.13□□□□□ -1.59
HLA-DMBP28068 AC110603.1-201ENST00000580645 468 ntTSL 3 BASIC5.13□□□□□ -1.59
HLA-DMBP28068 AC090283.1-201ENST00000582101 265 ntTSL 3 BASIC5.13□□□□□ -1.59
HLA-DMBP28068 AL953862.2-201ENST00000603089 820 ntBASIC5.13□□□□□ -1.59
HLA-DMBP28068 GLYATL1-219ENST00000612196 909 ntAPPRIS ALT2 TSL 1 (best) BASIC5.13□□□□□ -1.59
HLA-DMBP28068 AC012629.3-201ENST00000623397 328 ntBASIC5.13□□□□□ -1.59
HLA-DMBP28068 AC073263.3-201ENST00000624449 858 ntBASIC5.13□□□□□ -1.59
HLA-DMBP28068 AC005355.2-201ENST00000625064 484 ntBASIC5.13□□□□□ -1.59
HLA-DMBP28068 MIR665-201ENST00000635949 72 ntBASIC5.13□□□□□ -1.59
HLA-DMBP28068 AL354702.2-202ENST00000641481 890 ntBASIC5.13□□□□□ -1.59
HLA-DMBP28068 ZFY-202ENST00000383052 5113 ntAPPRIS P1 TSL 5 BASIC5.13□□□□□ -1.59
HLA-DMBP28068 RARB-204ENST00000458646 2590 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
HLA-DMBP28068 GYPA-214ENST00000641688 1764 ntAPPRIS ALT2 BASIC5.13□□□□□ -1.59
HLA-DMBP28068 EFNA5-206ENST00000611503 4933 ntTSL 5 BASIC5.13□□□□□ -1.59
HLA-DMBP28068 LRRC37B-201ENST00000327564 3162 ntAPPRIS ALT2 TSL 1 (best) BASIC5.13□□□□□ -1.59
HLA-DMBP28068 ECHDC1-210ENST00000454859 2341 ntAPPRIS P3 TSL 1 (best) BASIC5.13□□□□□ -1.59
HLA-DMBP28068 MAPK10-366ENST00000641903 2812 ntAPPRIS ALT1 BASIC5.13□□□□□ -1.59
HLA-DMBP28068 LRRC7-203ENST00000370958 2375 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
HLA-DMBP28068 RASGRF1-201ENST00000394745 2850 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
HLA-DMBP28068 NBPF11-204ENST00000614785 4343 ntAPPRIS ALT2 TSL 5 BASIC5.13□□□□□ -1.59
HLA-DMBP28068 AC009779.8-201ENST00000641684 4384 ntBASIC5.13□□□□□ -1.59
HLA-DMBP28068 FAM221B-203ENST00000423537 2931 ntAPPRIS P2 TSL 1 (best) BASIC5.13□□□□□ -1.59
HLA-DMBP28068 KLHL5-201ENST00000261425 3425 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
HLA-DMBP28068 FAM208A-210ENST00000614531 3441 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
HLA-DMBP28068 DCSTAMP-208ENST00000622554 1471 ntTSL 5 BASIC5.13□□□□□ -1.59
HLA-DMBP28068 GJA10-203ENST00000638915 1479 ntAPPRIS ALT2 TSL 5 BASIC5.13□□□□□ -1.59
HLA-DMBP28068 PLCH1-206ENST00000494598 3525 ntTSL 5 BASIC5.13□□□□□ -1.59
HLA-DMBP28068 NPHP3-AS1-202ENST00000504440 2507 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
HLA-DMBP28068 GOLGB1-202ENST00000393667 11198 ntAPPRIS ALT2 TSL 1 (best) BASIC5.12□□□□□ -1.59
HLA-DMBP28068 ZFP90-201ENST00000398253 4384 ntAPPRIS P1 TSL 4 BASIC5.12□□□□□ -1.59
HLA-DMBP28068 DNAJC16-202ENST00000375847 6069 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
HLA-DMBP28068 AC007402.1-201ENST00000440698 3939 ntTSL 2 BASIC5.12□□□□□ -1.59
HLA-DMBP28068 PLCB4-202ENST00000378473 5619 ntAPPRIS ALT1 TSL 1 (best) BASIC5.12□□□□□ -1.59
HLA-DMBP28068 NEDD9-202ENST00000379446 4536 ntAPPRIS P3 TSL 1 (best) BASIC5.12□□□□□ -1.59
HLA-DMBP28068 FOPNL-201ENST00000255759 2275 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
Retrieved 100 of 98,524 protein–RNA pairs in 103.2 ms