Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 AL049647.1-201ENST00000319682 1789 ntTSL 2 BASIC7.18□□□□□ -1.26
USP39Q53GS9 INTS6-203ENST00000442263 15428 ntTSL 1 (best) BASIC7.18□□□□□ -1.26
USP39Q53GS9 LRAT-206ENST00000507827 2654 ntAPPRIS P1 TSL 1 (best) BASIC7.18□□□□□ -1.26
USP39Q53GS9 TRIM5-202ENST00000380034 2991 ntAPPRIS P1 TSL 2 BASIC7.18□□□□□ -1.26
USP39Q53GS9 MTMR7-201ENST00000180173 3850 ntAPPRIS P1 TSL 1 (best) BASIC7.18□□□□□ -1.26
USP39Q53GS9 KIAA0586-201ENST00000261244 4807 ntAPPRIS P3 TSL 1 (best) BASIC7.18□□□□□ -1.26
USP39Q53GS9 CLHC1-204ENST00000407122 2139 ntAPPRIS P1 TSL 5 BASIC7.18□□□□□ -1.26
USP39Q53GS9 LRRC37A12P-201ENST00000454917 1801 ntBASIC7.18□□□□□ -1.26
USP39Q53GS9 CENPJ-201ENST00000381884 4347 ntAPPRIS P1 TSL 1 (best) BASIC7.18□□□□□ -1.26
USP39Q53GS9 PPWD1-201ENST00000261308 2166 ntAPPRIS P1 TSL 1 (best) BASIC7.18□□□□□ -1.26
USP39Q53GS9 KLHL2-204ENST00000506761 2169 ntTSL 5 BASIC7.18□□□□□ -1.26
USP39Q53GS9 NAT1-206ENST00000518029 2162 ntAPPRIS P1 TSL 1 (best) BASIC7.18□□□□□ -1.26
USP39Q53GS9 PPWD1-214ENST00000535264 2195 ntTSL 2 BASIC7.18□□□□□ -1.26
USP39Q53GS9 AL022068.1-201ENST00000636202 1875 ntTSL 5 BASIC7.18□□□□□ -1.26
USP39Q53GS9 ADGRA3-209ENST00000508133 1572 ntTSL 1 (best) BASIC7.18□□□□□ -1.26
USP39Q53GS9 OR4A16-201ENST00000314721 1081 ntAPPRIS P1 BASIC7.18□□□□□ -1.26
USP39Q53GS9 TRIM69-202ENST00000338264 1222 ntTSL 1 (best) BASIC7.18□□□□□ -1.26
USP39Q53GS9 RNA5SP472-201ENST00000363868 119 ntBASIC7.18□□□□□ -1.26
USP39Q53GS9 RN7SKP187-201ENST00000365536 330 ntBASIC7.18□□□□□ -1.26
USP39Q53GS9 RPL12P1-201ENST00000374520 498 ntBASIC7.18□□□□□ -1.26
USP39Q53GS9 XAGE3-202ENST00000375491 489 ntAPPRIS P1 TSL 1 (best) BASIC7.18□□□□□ -1.26
USP39Q53GS9 CFAP61-203ENST00000377293 1059 ntAPPRIS ALT2 TSL 1 (best) BASIC7.18□□□□□ -1.26
USP39Q53GS9 AC104463.1-201ENST00000411431 365 ntTSL 5 BASIC7.18□□□□□ -1.26
USP39Q53GS9 MYO16-AS2-201ENST00000412809 436 ntTSL 3 BASIC7.18□□□□□ -1.26
USP39Q53GS9 CHL1-AS1-201ENST00000417612 913 ntTSL 1 (best) BASIC7.18□□□□□ -1.26
USP39Q53GS9 ZNF885P-201ENST00000420174 1098 ntBASIC7.18□□□□□ -1.26
USP39Q53GS9 AL391069.1-201ENST00000422153 358 ntTSL 3 BASIC7.18□□□□□ -1.26
USP39Q53GS9 PTPN2P1-201ENST00000423212 1072 ntBASIC7.18□□□□□ -1.26
USP39Q53GS9 SETP8-201ENST00000435341 628 ntBASIC7.18□□□□□ -1.26
USP39Q53GS9 AL513348.1-201ENST00000435554 440 ntTSL 3 BASIC7.18□□□□□ -1.26
USP39Q53GS9 CASC6-201ENST00000437768 733 ntTSL 1 (best) BASIC7.18□□□□□ -1.26
USP39Q53GS9 MTCO3P43-201ENST00000440974 771 ntBASIC7.18□□□□□ -1.26
USP39Q53GS9 RNF2P1-201ENST00000442955 1010 ntBASIC7.18□□□□□ -1.26
USP39Q53GS9 AL512649.2-201ENST00000446206 597 ntTSL 3 BASIC7.18□□□□□ -1.26
USP39Q53GS9 LINC00349-201ENST00000448748 841 ntTSL 5 BASIC7.18□□□□□ -1.26
USP39Q53GS9 AL662889.1-201ENST00000453572 389 ntTSL 3 BASIC7.18□□□□□ -1.26
USP39Q53GS9 AL117382.2-201ENST00000455642 403 ntTSL 3 BASIC7.18□□□□□ -1.26
USP39Q53GS9 RN7SKP198-201ENST00000459286 306 ntBASIC7.18□□□□□ -1.26
USP39Q53GS9 AC098818.1-201ENST00000478593 252 ntBASIC7.18□□□□□ -1.26
USP39Q53GS9 RPS3AP6-201ENST00000484430 795 ntBASIC7.18□□□□□ -1.26
USP39Q53GS9 AC106895.1-201ENST00000515825 548 ntTSL 4 BASIC7.18□□□□□ -1.26
USP39Q53GS9 Y_RNA.717-201ENST00000517106 92 ntBASIC7.18□□□□□ -1.26
USP39Q53GS9 IGLC4-201ENST00000517690 248 ntBASIC7.18□□□□□ -1.26
USP39Q53GS9 AC009879.1-201ENST00000520029 839 ntBASIC7.18□□□□□ -1.26
USP39Q53GS9 OXR1-212ENST00000521592 993 ntTSL 5 BASIC7.18□□□□□ -1.26
USP39Q53GS9 AC084851.2-201ENST00000530377 364 ntBASIC7.18□□□□□ -1.26
USP39Q53GS9 ALG9-IT1-201ENST00000531305 684 ntTSL 3 BASIC7.18□□□□□ -1.26
USP39Q53GS9 OR8K4P-201ENST00000534608 872 ntBASIC7.18□□□□□ -1.26
USP39Q53GS9 AC139103.1-201ENST00000534696 1030 ntBASIC7.18□□□□□ -1.26
USP39Q53GS9 AC025419.1-204ENST00000539653 745 ntTSL 3 BASIC7.18□□□□□ -1.26
USP39Q53GS9 AP000753.2-201ENST00000540307 423 ntTSL 3 BASIC7.18□□□□□ -1.26
USP39Q53GS9 OR5BK1P-201ENST00000550421 823 ntBASIC7.18□□□□□ -1.26
USP39Q53GS9 SNHG14-217ENST00000552781 552 ntTSL 1 (best) BASIC7.18□□□□□ -1.26
USP39Q53GS9 DLGAP1-AS3-201ENST00000577649 1258 ntTSL 1 (best) BASIC7.18□□□□□ -1.26
USP39Q53GS9 MIR378C-201ENST00000578683 81 ntBASIC7.18□□□□□ -1.26
USP39Q53GS9 AC010511.1-202ENST00000590229 573 ntTSL 4 BASIC7.18□□□□□ -1.26
USP39Q53GS9 BNIP3P38-201ENST00000601117 544 ntBASIC7.18□□□□□ -1.26
USP39Q53GS9 AC040174.2-201ENST00000602701 465 ntBASIC7.18□□□□□ -1.26
USP39Q53GS9 BNIP3P7-201ENST00000605641 516 ntBASIC7.18□□□□□ -1.26
USP39Q53GS9 AL121583.1-201ENST00000612444 682 ntBASIC7.18□□□□□ -1.26
USP39Q53GS9 NF1P10-201ENST00000613227 742 ntBASIC7.18□□□□□ -1.26
USP39Q53GS9 MIR8089-201ENST00000620165 82 ntBASIC7.18□□□□□ -1.26
USP39Q53GS9 AC073263.3-201ENST00000624449 858 ntBASIC7.18□□□□□ -1.26
USP39Q53GS9 LINC01173-201ENST00000629370 331 ntTSL 3 BASIC7.18□□□□□ -1.26
USP39Q53GS9 PSMD5-AS1-213ENST00000640327 3531 ntTSL 1 (best) BASIC7.18□□□□□ -1.26
USP39Q53GS9 CTAGE5-201ENST00000280082 2554 ntTSL 1 (best) BASIC7.18□□□□□ -1.26
USP39Q53GS9 NCAPG2-202ENST00000409339 5253 ntTSL 1 (best) BASIC7.18□□□□□ -1.26
USP39Q53GS9 HMG20A-202ENST00000381714 4112 ntAPPRIS P1 TSL 1 (best) BASIC7.18□□□□□ -1.26
USP39Q53GS9 BVES-AS1-202ENST00000369122 1716 ntTSL 1 (best) BASIC7.18□□□□□ -1.26
USP39Q53GS9 OR51E2-201ENST00000396950 2781 ntAPPRIS P1 BASIC7.18□□□□□ -1.26
USP39Q53GS9 OLR1-201ENST00000309539 2462 ntAPPRIS P1 TSL 1 (best) BASIC7.18□□□□□ -1.26
USP39Q53GS9 ANAPC5-204ENST00000441917 2147 ntTSL 5 BASIC7.18□□□□□ -1.26
USP39Q53GS9 SYNPO2-203ENST00000434046 3588 ntTSL 1 (best) BASIC7.18□□□□□ -1.26
USP39Q53GS9 SRFBP1-201ENST00000339397 2855 ntAPPRIS P1 TSL 1 (best) BASIC7.18□□□□□ -1.26
USP39Q53GS9 PLCH1-203ENST00000447496 6196 ntAPPRIS ALT2 TSL 1 (best) BASIC7.18□□□□□ -1.26
USP39Q53GS9 PDGFC-203ENST00000502773 4165 ntAPPRIS P1 TSL 1 (best) BASIC7.17□□□□□ -1.26
USP39Q53GS9 BRDT-202ENST00000362005 3409 ntAPPRIS P3 TSL 1 (best) BASIC7.17□□□□□ -1.26
USP39Q53GS9 BRINP3-201ENST00000367462 3142 ntAPPRIS P1 TSL 1 (best) BASIC7.17□□□□□ -1.26
USP39Q53GS9 ZNF521-214ENST00000584787 4327 ntTSL 1 (best) BASIC7.17□□□□□ -1.26
USP39Q53GS9 ETV1-201ENST00000242066 6348 ntTSL 5 BASIC7.17□□□□□ -1.26
USP39Q53GS9 CCDC77-201ENST00000239830 2371 ntAPPRIS P3 TSL 2 BASIC7.17□□□□□ -1.26
USP39Q53GS9 MFSD8-217ENST00000641178 4374 ntBASIC7.17□□□□□ -1.26
USP39Q53GS9 GRIK2-206ENST00000413795 4876 ntTSL 1 (best) BASIC7.17□□□□□ -1.26
USP39Q53GS9 AC093829.1-201ENST00000506662 1618 ntBASIC7.17□□□□□ -1.26
USP39Q53GS9 KIAA0391-201ENST00000250377 6118 ntTSL 2 BASIC7.17□□□□□ -1.26
USP39Q53GS9 FAR2P1-201ENST00000325390 3679 ntTSL 5 BASIC7.17□□□□□ -1.26
USP39Q53GS9 NPIPB11-201ENST00000524087 3653 ntAPPRIS P1 TSL 5 BASIC7.17□□□□□ -1.26
USP39Q53GS9 RAD51AP2-201ENST00000399080 3724 ntAPPRIS P1 TSL 1 (best) BASIC7.17□□□□□ -1.26
USP39Q53GS9 MUC4-209ENST00000463781 17110 ntAPPRIS ALT2 TSL 5 BASIC7.17□□□□□ -1.26
USP39Q53GS9 DDX47-201ENST00000352940 1698 ntTSL 1 (best) BASIC7.17□□□□□ -1.26
USP39Q53GS9 PAX8-AS1-202ENST00000422956 11799 ntTSL 1 (best) BASIC7.17□□□□□ -1.26
USP39Q53GS9 HESX1-201ENST00000295934 981 ntAPPRIS P1 TSL 1 (best) BASIC7.17□□□□□ -1.26
USP39Q53GS9 OR51L1-201ENST00000321543 948 ntAPPRIS P1 BASIC7.17□□□□□ -1.26
USP39Q53GS9 CASP10-206ENST00000374650 1126 ntTSL 1 (best) BASIC7.17□□□□□ -1.26
USP39Q53GS9 RNA5SP176-201ENST00000390956 110 ntBASIC7.17□□□□□ -1.26
USP39Q53GS9 LL22NC01-81G9.3-201ENST00000400221 992 ntTSL 2 BASIC7.17□□□□□ -1.26
USP39Q53GS9 GTF2IP5-201ENST00000414608 731 ntBASIC7.17□□□□□ -1.26
USP39Q53GS9 RPSAP60-201ENST00000415403 880 ntBASIC7.17□□□□□ -1.26
USP39Q53GS9 VPS26BP1-201ENST00000417155 755 ntBASIC7.17□□□□□ -1.26
USP39Q53GS9 AL121823.1-201ENST00000418369 741 ntTSL 3 BASIC7.17□□□□□ -1.26
Retrieved 100 of 98,524 protein–RNA pairs in 104.8 ms