Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 Metazoa_SRP.106-201ENST00000622471 296 ntBASIC10.87□□□□□ -0.67
CUX1P39880 AL590065.1-201ENST00000603371 4774 ntBASIC10.87□□□□□ -0.67
CUX1P39880 CA5A-201ENST00000309893 7567 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
CUX1P39880 TRHDE-201ENST00000261180 10733 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
CUX1P39880 ZNF518A-201ENST00000316045 7277 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
CUX1P39880 NXF2B-202ENST00000602195 2322 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
CUX1P39880 NXF2-202ENST00000625106 2337 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
CUX1P39880 LEPR-205ENST00000371060 5135 ntTSL 1 (best) BASIC10.87□□□□□ -0.67
CUX1P39880 PEAK1-202ENST00000558305 4644 ntTSL 4 BASIC10.87□□□□□ -0.67
CUX1P39880 MTCO1P25-201ENST00000414449 1799 ntBASIC10.86□□□□□ -0.67
CUX1P39880 TRMT10A-202ENST00000394876 1638 ntAPPRIS P1 TSL 1 (best) BASIC10.86□□□□□ -0.67
CUX1P39880 TTLL5-207ENST00000554510 2624 ntTSL 1 (best) BASIC10.86□□□□□ -0.67
CUX1P39880 CLEC12A-203ENST00000355690 1428 ntAPPRIS ALT2 TSL 1 (best) BASIC10.86□□□□□ -0.67
CUX1P39880 ICA1L-210ENST00000425178 879 ntTSL 1 (best) BASIC10.86□□□□□ -0.67
CUX1P39880 AL096678.1-201ENST00000438877 472 ntTSL 3 BASIC10.86□□□□□ -0.67
CUX1P39880 SSX8-201ENST00000506270 579 ntBASIC10.86□□□□□ -0.67
CUX1P39880 TPRX1P1-201ENST00000557620 319 ntBASIC10.86□□□□□ -0.67
CUX1P39880 AL132655.1-201ENST00000601795 1153 ntTSL 3 BASIC10.86□□□□□ -0.67
CUX1P39880 MALAT1-214ENST00000618925 424 ntTSL 5 BASIC10.86□□□□□ -0.67
CUX1P39880 Metazoa_SRP.130-201ENST00000622625 267 ntBASIC10.86□□□□□ -0.67
CUX1P39880 AP002008.2-205ENST00000637111 1091 ntTSL 5 BASIC10.86□□□□□ -0.67
CUX1P39880 DMC1-203ENST00000428462 2082 ntTSL 2 BASIC10.86□□□□□ -0.67
CUX1P39880 OR7E25P-202ENST00000641088 5937 ntBASIC10.86□□□□□ -0.67
CUX1P39880 ZNF585B-203ENST00000527838 2732 ntTSL 1 (best) BASIC10.86□□□□□ -0.67
CUX1P39880 ENSA-204ENST00000356527 2546 ntTSL 1 (best) BASIC10.86□□□□□ -0.67
CUX1P39880 IL31RA-203ENST00000359040 2529 ntAPPRIS ALT2 TSL 1 (best) BASIC10.86□□□□□ -0.67
CUX1P39880 ZNF559-ZNF177-202ENST00000446085 2470 ntTSL 5 BASIC10.86□□□□□ -0.67
CUX1P39880 ACPP-201ENST00000336375 3125 ntAPPRIS P3 TSL 1 (best) BASIC10.86□□□□□ -0.67
CUX1P39880 KCTD6-201ENST00000355076 2425 ntAPPRIS P1 TSL 1 (best) BASIC10.86□□□□□ -0.67
CUX1P39880 LINC01011-204ENST00000605901 1573 ntTSL 2 BASIC10.86□□□□□ -0.67
CUX1P39880 GSTM2-207ENST00000460717 1449 ntTSL 2 BASIC10.85□□□□□ -0.67
CUX1P39880 UHRF1BP1-201ENST00000192788 9570 ntAPPRIS P2 TSL 1 (best) BASIC10.85□□□□□ -0.67
CUX1P39880 USPL1-203ENST00000614860 4074 ntTSL 1 (best) BASIC10.85□□□□□ -0.67
CUX1P39880 NCOA4-204ENST00000581486 3549 ntAPPRIS P1 TSL 1 (best) BASIC10.85□□□□□ -0.67
CUX1P39880 BCLAF3-203ENST00000379687 6528 ntAPPRIS P2 TSL 5 BASIC10.85□□□□□ -0.67
CUX1P39880 GUCY1A2-203ENST00000526355 16205 ntAPPRIS P1 TSL 1 (best) BASIC10.85□□□□□ -0.67
CUX1P39880 PCYT1B-201ENST00000356768 1289 ntTSL 1 (best) BASIC10.85□□□□□ -0.67
CUX1P39880 OR2L2-201ENST00000366479 1134 ntAPPRIS P1 BASIC10.85□□□□□ -0.67
CUX1P39880 AC110749.1-201ENST00000462007 357 ntBASIC10.85□□□□□ -0.67
CUX1P39880 MTND6P8-201ENST00000503471 522 ntBASIC10.85□□□□□ -0.67
CUX1P39880 FLVCR2-207ENST00000555027 938 ntTSL 3 BASIC10.85□□□□□ -0.67
CUX1P39880 AL162464.1-201ENST00000557642 554 ntTSL 5 BASIC10.85□□□□□ -0.67
CUX1P39880 INO80-AS1-201ENST00000558967 312 ntTSL 5 BASIC10.85□□□□□ -0.67
CUX1P39880 ZNF814-214ENST00000600634 461 ntTSL 1 (best) BASIC10.85□□□□□ -0.67
CUX1P39880 PFKM-232ENST00000629846 381 ntTSL 4 BASIC10.85□□□□□ -0.67
CUX1P39880 AL138756.1-201ENST00000563434 4488 ntTSL 2 BASIC10.85□□□□□ -0.67
CUX1P39880 PLCH1-206ENST00000494598 3525 ntTSL 5 BASIC10.85□□□□□ -0.67
CUX1P39880 DNAJC5G-203ENST00000404433 1647 ntAPPRIS P1 TSL 5 BASIC10.85□□□□□ -0.67
CUX1P39880 ESRRG-212ENST00000463665 3359 ntTSL 2 BASIC10.85□□□□□ -0.67
CUX1P39880 RASGEF1B-214ENST00000638048 2386 ntTSL 5 BASIC10.85□□□□□ -0.67
CUX1P39880 ARHGAP29-201ENST00000260526 6087 ntAPPRIS P1 TSL 1 (best) BASIC10.85□□□□□ -0.67
CUX1P39880 NEK2P2-201ENST00000438441 1338 ntBASIC10.84□□□□□ -0.67
CUX1P39880 ZNF841-201ENST00000389534 3503 ntAPPRIS P1 TSL 1 (best) BASIC10.84□□□□□ -0.67
CUX1P39880 MNS1-201ENST00000260453 2023 ntAPPRIS P1 TSL 1 (best) BASIC10.84□□□□□ -0.67
CUX1P39880 C1orf194-203ENST00000369948 663 ntAPPRIS P1 TSL 2 BASIC10.84□□□□□ -0.67
CUX1P39880 IFNA8-201ENST00000380205 1039 ntAPPRIS P1 BASIC10.84□□□□□ -0.67
CUX1P39880 BX119917.1-201ENST00000432517 502 ntBASIC10.84□□□□□ -0.67
CUX1P39880 AC026826.1-201ENST00000493002 361 ntBASIC10.84□□□□□ -0.67
CUX1P39880 AC114781.3-201ENST00000512083 142 ntBASIC10.84□□□□□ -0.67
CUX1P39880 RGS6-215ENST00000554782 1110 ntTSL 1 (best) BASIC10.84□□□□□ -0.67
CUX1P39880 AC010333.3-201ENST00000615100 402 ntBASIC10.84□□□□□ -0.67
CUX1P39880 MRPL57P1-201ENST00000621486 265 ntBASIC10.84□□□□□ -0.67
CUX1P39880 LINC02177-201ENST00000564305 5298 ntTSL 1 (best) BASIC10.84□□□□□ -0.67
CUX1P39880 AP005139.1-201ENST00000580702 1647 ntBASIC10.84□□□□□ -0.67
CUX1P39880 HABP2-201ENST00000351270 3009 ntAPPRIS P3 TSL 1 (best) BASIC10.84□□□□□ -0.67
CUX1P39880 EIF4G2-205ENST00000525681 3654 ntAPPRIS ALT2 TSL 1 (best) BASIC10.84□□□□□ -0.67
CUX1P39880 MRRF-202ENST00000344641 9826 ntAPPRIS P1 TSL 2 BASIC10.84□□□□□ -0.67
CUX1P39880 NOL8-208ENST00000442668 4281 ntAPPRIS P3 TSL 1 (best) BASIC10.84□□□□□ -0.67
CUX1P39880 TNS1-201ENST00000171887 10331 ntAPPRIS P3 TSL 1 (best) BASIC10.84□□□□□ -0.67
CUX1P39880 ACSL4-204ENST00000469796 5225 ntAPPRIS P4 TSL 5 BASIC10.84□□□□□ -0.67
CUX1P39880 ARPP21-204ENST00000412048 2506 ntTSL 2 BASIC10.84□□□□□ -0.67
CUX1P39880 TDRD3-209ENST00000621840 2497 ntTSL 1 (best) BASIC10.84□□□□□ -0.67
CUX1P39880 OR51M1-203ENST00000642046 4092 ntAPPRIS P1 BASIC10.84□□□□□ -0.67
CUX1P39880 LRP2BP-203ENST00000510776 3055 ntTSL 1 (best) BASIC10.84□□□□□ -0.67
CUX1P39880 AL035555.1-201ENST00000404462 1790 ntBASIC10.84□□□□□ -0.67
CUX1P39880 HEPH-203ENST00000419594 3694 ntTSL 1 (best) BASIC10.84□□□□□ -0.67
CUX1P39880 LINC02179-201ENST00000561523 3673 ntTSL 1 (best) BASIC10.84□□□□□ -0.67
CUX1P39880 ALPK1-201ENST00000177648 4537 ntAPPRIS P3 TSL 1 (best) BASIC10.84□□□□□ -0.67
CUX1P39880 LINC00707-201ENST00000436383 3070 ntTSL 2 BASIC10.84□□□□□ -0.67
CUX1P39880 ANLN-201ENST00000265748 4787 ntAPPRIS P1 TSL 1 (best) BASIC10.84□□□□□ -0.67
CUX1P39880 BTK-209ENST00000618050 2417 ntTSL 5 BASIC10.84□□□□□ -0.67
CUX1P39880 CYCSP52-201ENST00000422857 310 ntBASIC10.84□□□□□ -0.67
CUX1P39880 RPL12P16-201ENST00000431098 498 ntBASIC10.84□□□□□ -0.67
CUX1P39880 AC003989.1-201ENST00000434569 565 ntBASIC10.84□□□□□ -0.67
CUX1P39880 AC074286.1-201ENST00000452002 544 ntTSL 4 BASIC10.84□□□□□ -0.67
CUX1P39880 LINC02512-201ENST00000509548 429 ntTSL 5 BASIC10.84□□□□□ -0.67
CUX1P39880 AC011120.1-201ENST00000583916 624 ntTSL 5 BASIC10.84□□□□□ -0.67
CUX1P39880 Metazoa_SRP.134-201ENST00000610965 327 ntBASIC10.84□□□□□ -0.67
CUX1P39880 PPFIA2-203ENST00000443686 3782 ntTSL 2 BASIC10.83□□□□□ -0.67
CUX1P39880 AC126323.2-201ENST00000559985 2369 ntTSL 5 BASIC10.83□□□□□ -0.67
CUX1P39880 ARG1-203ENST00000368087 1532 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.67
CUX1P39880 ZNF410-205ENST00000442160 2076 ntTSL 1 (best) BASIC10.83□□□□□ -0.68
CUX1P39880 MED12-201ENST00000333646 6977 ntAPPRIS ALT2 TSL 5 BASIC10.83□□□□□ -0.68
CUX1P39880 SPARCL1-205ENST00000503414 2520 ntTSL 2 BASIC10.83□□□□□ -0.68
CUX1P39880 CYP3A5-201ENST00000222982 1720 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
CUX1P39880 DLG2-202ENST00000330014 2789 ntTSL 2 BASIC10.83□□□□□ -0.68
CUX1P39880 VTCN1-207ENST00000539893 2719 ntTSL 2 BASIC10.83□□□□□ -0.68
CUX1P39880 MAPKAPK5P1-201ENST00000431810 1376 ntBASIC10.83□□□□□ -0.68
CUX1P39880 TSC22D1-212ENST00000611198 2877 ntTSL 2 BASIC10.83□□□□□ -0.68
CUX1P39880 METTL9-211ENST00000615720 2890 ntTSL 2 BASIC10.83□□□□□ -0.68
Retrieved 100 of 98,524 protein–RNA pairs in 98.5 ms