Protein–RNA interactions for Protein: Q96CF2

CHMP4C, Charged multivesicular body protein 4c, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4CQ96CF2 AP000641.1-201ENST00000531988 1639 ntBASIC8.29□□□□□ -1.08
CHMP4CQ96CF2 DTNA-226ENST00000596745 1508 ntTSL 2 BASIC8.29□□□□□ -1.08
CHMP4CQ96CF2 NAV3-202ENST00000536525 7386 ntAPPRIS P1 TSL 1 (best) BASIC8.28□□□□□ -1.08
CHMP4CQ96CF2 MSANTD2-204ENST00000526629 3086 ntTSL 1 (best) BASIC8.28□□□□□ -1.08
CHMP4CQ96CF2 CS-201ENST00000351328 2975 ntAPPRIS P2 TSL 1 (best) BASIC8.28□□□□□ -1.08
CHMP4CQ96CF2 RABGAP1L-218ENST00000489615 6821 ntTSL 1 (best) BASIC8.28□□□□□ -1.08
CHMP4CQ96CF2 FDFT1-222ENST00000538689 2289 ntTSL 2 BASIC8.28□□□□□ -1.08
CHMP4CQ96CF2 KCNIP4-201ENST00000359001 2168 ntTSL 1 (best) BASIC8.28□□□□□ -1.08
CHMP4CQ96CF2 HABP2-201ENST00000351270 3009 ntAPPRIS P3 TSL 1 (best) BASIC8.28□□□□□ -1.08
CHMP4CQ96CF2 ABI1-207ENST00000376142 3576 ntTSL 1 (best) BASIC8.28□□□□□ -1.08
CHMP4CQ96CF2 CACNA1E-209ENST00000621551 14886 ntAPPRIS ALT2 TSL 5 BASIC8.28□□□□□ -1.08
CHMP4CQ96CF2 GABRR1-206ENST00000611484 3259 ntTSL 1 (best) BASIC8.28□□□□□ -1.08
CHMP4CQ96CF2 F9-202ENST00000394090 1272 ntTSL 1 (best) BASIC8.28□□□□□ -1.08
CHMP4CQ96CF2 ATP5E-203ENST00000395663 697 ntAPPRIS P1 TSL 2 BASIC8.28□□□□□ -1.08
CHMP4CQ96CF2 MIR541-201ENST00000401360 84 ntBASIC8.28□□□□□ -1.08
CHMP4CQ96CF2 CCR8-202ENST00000414803 1078 ntTSL 1 (best) BASIC8.28□□□□□ -1.08
CHMP4CQ96CF2 AC092801.1-201ENST00000443763 581 ntTSL 3 BASIC8.28□□□□□ -1.08
CHMP4CQ96CF2 AL157896.1-201ENST00000451617 790 ntTSL 1 (best) BASIC8.28□□□□□ -1.08
CHMP4CQ96CF2 RN7SL259P-201ENST00000478499 253 ntBASIC8.28□□□□□ -1.08
CHMP4CQ96CF2 RABGAP1L-216ENST00000486220 772 ntTSL 1 (best) BASIC8.28□□□□□ -1.08
CHMP4CQ96CF2 RPL5P11-201ENST00000498068 893 ntBASIC8.28□□□□□ -1.08
CHMP4CQ96CF2 AC114956.3-202ENST00000505645 482 ntTSL 5 BASIC8.28□□□□□ -1.08
CHMP4CQ96CF2 AC113398.2-201ENST00000507630 558 ntBASIC8.28□□□□□ -1.08
CHMP4CQ96CF2 AL035458.2-201ENST00000512005 478 ntTSL 3 BASIC8.28□□□□□ -1.08
CHMP4CQ96CF2 AC098487.1-203ENST00000512915 546 ntTSL 5 BASIC8.28□□□□□ -1.08
CHMP4CQ96CF2 SCARNA6-201ENST00000515982 265 ntBASIC8.28□□□□□ -1.08
CHMP4CQ96CF2 AC122713.1-201ENST00000518368 1015 ntBASIC8.28□□□□□ -1.08
CHMP4CQ96CF2 AC100854.1-201ENST00000520351 341 ntBASIC8.28□□□□□ -1.08
CHMP4CQ96CF2 AC087272.1-201ENST00000523624 533 ntBASIC8.28□□□□□ -1.08
CHMP4CQ96CF2 EPB41L2-209ENST00000525193 2121 ntTSL 5 BASIC8.28□□□□□ -1.08
CHMP4CQ96CF2 AC110056.1-201ENST00000525759 911 ntBASIC8.28□□□□□ -1.08
CHMP4CQ96CF2 SOX9-AS1-208ENST00000529667 340 ntTSL 3 BASIC8.28□□□□□ -1.08
CHMP4CQ96CF2 AC044839.3-201ENST00000532068 860 ntTSL 3 BASIC8.28□□□□□ -1.08
CHMP4CQ96CF2 SOX9-AS1-211ENST00000533179 460 ntTSL 3 BASIC8.28□□□□□ -1.08
CHMP4CQ96CF2 HPS5-207ENST00000537258 1275 ntTSL 5 BASIC8.28□□□□□ -1.08
CHMP4CQ96CF2 AC008056.2-201ENST00000553812 551 ntTSL 5 BASIC8.28□□□□□ -1.08
CHMP4CQ96CF2 AC063962.1-201ENST00000608199 521 ntBASIC8.28□□□□□ -1.08
CHMP4CQ96CF2 FAM13A-AS1_2.1-201ENST00000611121 108 ntBASIC8.28□□□□□ -1.08
CHMP4CQ96CF2 AC099654.15-201ENST00000639802 509 ntBASIC8.28□□□□□ -1.08
CHMP4CQ96CF2 AL354702.2-202ENST00000641481 890 ntBASIC8.28□□□□□ -1.08
CHMP4CQ96CF2 BRD7P1-201ENST00000557705 1915 ntBASIC8.28□□□□□ -1.08
CHMP4CQ96CF2 PLEKHA1-204ENST00000392799 3221 ntAPPRIS P1 TSL 1 (best) BASIC8.28□□□□□ -1.08
CHMP4CQ96CF2 ATAD1-202ENST00000328142 2939 ntAPPRIS P1 TSL 1 (best) BASIC8.28□□□□□ -1.08
CHMP4CQ96CF2 GRIP1-202ENST00000398016 4888 ntAPPRIS P1 TSL 1 (best) BASIC8.28□□□□□ -1.08
CHMP4CQ96CF2 AMZ2-206ENST00000577985 2257 ntAPPRIS P1 TSL 1 (best) BASIC8.28□□□□□ -1.08
CHMP4CQ96CF2 AC022507.1-201ENST00000548349 1505 ntBASIC8.28□□□□□ -1.08
CHMP4CQ96CF2 SLC39A12-202ENST00000377371 2725 ntAPPRIS ALT1 TSL 1 (best) BASIC8.28□□□□□ -1.08
CHMP4CQ96CF2 SP110-201ENST00000258381 2426 ntAPPRIS P4 TSL 2 BASIC8.28□□□□□ -1.08
CHMP4CQ96CF2 FAM13C-219ENST00000621119 3400 ntAPPRIS ALT2 TSL 5 BASIC8.28□□□□□ -1.08
CHMP4CQ96CF2 STAG1-201ENST00000236698 5951 ntTSL 1 (best) BASIC8.28□□□□□ -1.08
CHMP4CQ96CF2 MTHFD2L-201ENST00000325278 2300 ntAPPRIS ALT2 TSL 5 BASIC8.28□□□□□ -1.08
CHMP4CQ96CF2 LCP2-201ENST00000046794 4678 ntAPPRIS P2 TSL 1 (best) BASIC8.27□□□□□ -1.08
CHMP4CQ96CF2 SCP2-212ENST00000488965 3926 ntTSL 1 (best) BASIC8.27□□□□□ -1.08
CHMP4CQ96CF2 TTC8-217ENST00000622513 5270 ntAPPRIS P1 TSL 1 (best) BASIC8.27□□□□□ -1.08
CHMP4CQ96CF2 ZNF559-ZNF177-202ENST00000446085 2470 ntTSL 5 BASIC8.27□□□□□ -1.09
CHMP4CQ96CF2 MUC5B-204ENST00000529681 17911 ntAPPRIS P1 TSL 5 BASIC8.27□□□□□ -1.09
CHMP4CQ96CF2 OR2J2-203ENST00000641417 2392 ntAPPRIS P1 BASIC8.27□□□□□ -1.09
CHMP4CQ96CF2 CEACAM20-205ENST00000620096 1494 ntTSL 1 (best) BASIC8.27□□□□□ -1.09
CHMP4CQ96CF2 KLHL5-201ENST00000261425 3425 ntAPPRIS P1 TSL 1 (best) BASIC8.27□□□□□ -1.09
CHMP4CQ96CF2 FGA-201ENST00000302053 3678 ntAPPRIS P1 TSL 2 BASIC8.27□□□□□ -1.09
CHMP4CQ96CF2 GPX6-201ENST00000361902 1712 ntAPPRIS P2 TSL 1 (best) BASIC8.27□□□□□ -1.09
CHMP4CQ96CF2 GPX6-204ENST00000612264 1709 ntAPPRIS ALT1 TSL 5 BASIC8.27□□□□□ -1.09
CHMP4CQ96CF2 PATJ-203ENST00000371158 8505 ntAPPRIS P1 TSL 5 BASIC8.27□□□□□ -1.09
CHMP4CQ96CF2 CEP120-202ENST00000306481 4629 ntTSL 5 BASIC8.27□□□□□ -1.09
CHMP4CQ96CF2 OR6P1-201ENST00000334632 954 ntAPPRIS P1 BASIC8.27□□□□□ -1.09
CHMP4CQ96CF2 RNU12-2P-201ENST00000364789 156 ntBASIC8.27□□□□□ -1.09
CHMP4CQ96CF2 IGLV5-52-201ENST00000390289 379 ntAPPRIS P1 BASIC8.27□□□□□ -1.09
CHMP4CQ96CF2 RNA5SP53-201ENST00000391299 120 ntBASIC8.27□□□□□ -1.09
CHMP4CQ96CF2 MIR4435-2HG-203ENST00000409569 514 ntTSL 1 (best) BASIC8.27□□□□□ -1.09
CHMP4CQ96CF2 RN7SKP271-201ENST00000410528 320 ntBASIC8.27□□□□□ -1.09
CHMP4CQ96CF2 AL157932.1-201ENST00000413246 363 ntTSL 3 BASIC8.27□□□□□ -1.09
CHMP4CQ96CF2 AC016716.2-201ENST00000418621 486 ntTSL 3 BASIC8.27□□□□□ -1.09
CHMP4CQ96CF2 E2F6P1-201ENST00000428850 745 ntBASIC8.27□□□□□ -1.09
CHMP4CQ96CF2 AL604028.2-201ENST00000437848 788 ntBASIC8.27□□□□□ -1.09
CHMP4CQ96CF2 HMGN1P32-201ENST00000441744 256 ntBASIC8.27□□□□□ -1.09
CHMP4CQ96CF2 AL033379.1-201ENST00000442184 481 ntTSL 3 BASIC8.27□□□□□ -1.09
CHMP4CQ96CF2 AC009518.1-201ENST00000452219 559 ntTSL 4 BASIC8.27□□□□□ -1.09
CHMP4CQ96CF2 SRP68P2-201ENST00000456184 254 ntBASIC8.27□□□□□ -1.09
CHMP4CQ96CF2 AL356364.1-201ENST00000458443 182 ntTSL 3 BASIC8.27□□□□□ -1.09
CHMP4CQ96CF2 RN7SL849P-201ENST00000485236 295 ntBASIC8.27□□□□□ -1.09
CHMP4CQ96CF2 RN7SL868P-201ENST00000485915 303 ntBASIC8.27□□□□□ -1.09
CHMP4CQ96CF2 RN7SL655P-201ENST00000486087 298 ntBASIC8.27□□□□□ -1.09
CHMP4CQ96CF2 AC097103.2-205ENST00000515247 567 ntTSL 4 BASIC8.27□□□□□ -1.09
CHMP4CQ96CF2 AC083923.2-202ENST00000517773 498 ntTSL 3 BASIC8.27□□□□□ -1.09
CHMP4CQ96CF2 AC016813.1-201ENST00000521511 735 ntTSL 3 BASIC8.27□□□□□ -1.09
CHMP4CQ96CF2 IGHVIII-11-1-201ENST00000522733 267 ntBASIC8.27□□□□□ -1.09
CHMP4CQ96CF2 COX6C-210ENST00000524245 513 ntAPPRIS P1 TSL 2 BASIC8.27□□□□□ -1.09
CHMP4CQ96CF2 CRYAB-205ENST00000526180 1017 ntAPPRIS P1 TSL 1 (best) BASIC8.27□□□□□ -1.09
CHMP4CQ96CF2 AC138123.2-201ENST00000550324 579 ntTSL 3 BASIC8.27□□□□□ -1.09
CHMP4CQ96CF2 AC079035.1-201ENST00000551713 848 ntTSL 1 (best) BASIC8.27□□□□□ -1.09
CHMP4CQ96CF2 AC096708.2-201ENST00000577676 512 ntBASIC8.27□□□□□ -1.09
CHMP4CQ96CF2 RN7SL32P-201ENST00000580514 281 ntBASIC8.27□□□□□ -1.09
CHMP4CQ96CF2 AC087575.1-201ENST00000585087 229 ntBASIC8.27□□□□□ -1.09
CHMP4CQ96CF2 AC013731.1-201ENST00000604340 883 ntBASIC8.27□□□□□ -1.09
CHMP4CQ96CF2 LINC02112-203ENST00000606169 419 ntTSL 5 BASIC8.27□□□□□ -1.09
CHMP4CQ96CF2 RN7SL126P-201ENST00000616400 299 ntBASIC8.27□□□□□ -1.09
CHMP4CQ96CF2 AL391597.1-201ENST00000618707 694 ntBASIC8.27□□□□□ -1.09
CHMP4CQ96CF2 CT45A6-202ENST00000620654 878 ntAPPRIS P1 TSL 1 (best) BASIC8.27□□□□□ -1.09
CHMP4CQ96CF2 AC091059.2-201ENST00000623355 614 ntBASIC8.27□□□□□ -1.09
CHMP4CQ96CF2 AC034229.6-201ENST00000623704 224 ntBASIC8.27□□□□□ -1.09
Retrieved 100 of 98,524 protein–RNA pairs in 94.7 ms