Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 BMX-201ENST00000342014 2499 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.67
CUX1P39880 SYNE1-206ENST00000367253 5189 ntTSL 5 BASIC10.9□□□□□ -0.67
CUX1P39880 ARHGAP42P2-201ENST00000416089 2140 ntBASIC10.9□□□□□ -0.67
CUX1P39880 RNF145-205ENST00000518802 2603 ntTSL 1 (best) BASIC10.9□□□□□ -0.67
CUX1P39880 MYT1L-202ENST00000399161 7063 ntAPPRIS ALT2 TSL 1 (best) BASIC10.89□□□□□ -0.67
CUX1P39880 ERVW-1-202ENST00000603053 2763 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
CUX1P39880 MT4-201ENST00000219162 294 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
CUX1P39880 KRTAP23-1-201ENST00000334160 211 ntAPPRIS P1 BASIC10.89□□□□□ -0.67
CUX1P39880 RN7SKP121-201ENST00000410842 305 ntBASIC10.89□□□□□ -0.67
CUX1P39880 AF064858.3-201ENST00000419664 509 ntTSL 5 BASIC10.89□□□□□ -0.67
CUX1P39880 AL022100.2-201ENST00000422548 389 ntTSL 3 BASIC10.89□□□□□ -0.67
CUX1P39880 AL645936.1-201ENST00000441979 518 ntBASIC10.89□□□□□ -0.67
CUX1P39880 RPL6P30-201ENST00000443382 862 ntBASIC10.89□□□□□ -0.67
CUX1P39880 AC004870.2-201ENST00000445615 831 ntTSL 3 BASIC10.89□□□□□ -0.67
CUX1P39880 DEFA11P-201ENST00000446470 261 ntBASIC10.89□□□□□ -0.67
CUX1P39880 KBTBD8-202ENST00000460576 984 ntTSL 2 BASIC10.89□□□□□ -0.67
CUX1P39880 AC122713.1-201ENST00000518368 1015 ntBASIC10.89□□□□□ -0.67
CUX1P39880 LINC02341-202ENST00000637462 1295 ntTSL 5 BASIC10.89□□□□□ -0.67
CUX1P39880 ESRP1-204ENST00000454170 3482 ntTSL 1 (best) BASIC10.89□□□□□ -0.67
CUX1P39880 MEIS1-202ENST00000398506 3530 ntTSL 5 BASIC10.89□□□□□ -0.67
CUX1P39880 ARHGAP5-210ENST00000556611 4824 ntAPPRIS ALT1 TSL 5 BASIC10.89□□□□□ -0.67
CUX1P39880 PTPRR-202ENST00000342084 2037 ntAPPRIS ALT2 TSL 2 BASIC10.89□□□□□ -0.67
CUX1P39880 PTPRR-204ENST00000440835 2818 ntAPPRIS ALT2 TSL 1 (best) BASIC10.89□□□□□ -0.67
CUX1P39880 FCRL5-201ENST00000361835 5390 ntAPPRIS P2 TSL 1 (best) BASIC10.89□□□□□ -0.67
CUX1P39880 FAM114A2-201ENST00000351797 4443 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
CUX1P39880 TLR10-207ENST00000613579 3801 ntAPPRIS P1 TSL 3 BASIC10.89□□□□□ -0.67
CUX1P39880 CTNND1-213ENST00000526357 5994 ntTSL 1 (best) BASIC10.89□□□□□ -0.67
CUX1P39880 PPARA-203ENST00000407236 9995 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
CUX1P39880 XAGE5-201ENST00000351072 478 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
CUX1P39880 RNA5SP510-201ENST00000364697 99 ntBASIC10.89□□□□□ -0.67
CUX1P39880 AC011754.1-201ENST00000415201 491 ntTSL 5 BASIC10.89□□□□□ -0.67
CUX1P39880 LINC01114-201ENST00000421071 482 ntTSL 3 BASIC10.89□□□□□ -0.67
CUX1P39880 AL669841.1-201ENST00000425723 558 ntTSL 2 BASIC10.89□□□□□ -0.67
CUX1P39880 AC017006.2-201ENST00000444077 464 ntTSL 5 BASIC10.89□□□□□ -0.67
CUX1P39880 LINC01789-202ENST00000455614 491 ntTSL 3 BASIC10.89□□□□□ -0.67
CUX1P39880 PPIAP19-201ENST00000486414 492 ntBASIC10.89□□□□□ -0.67
CUX1P39880 KHDC1P1-201ENST00000511053 508 ntBASIC10.89□□□□□ -0.67
CUX1P39880 Y_RNA.667-201ENST00000516212 107 ntBASIC10.89□□□□□ -0.67
CUX1P39880 RN7SKP238-201ENST00000516483 249 ntBASIC10.89□□□□□ -0.67
CUX1P39880 SNHG1-212ENST00000539975 955 ntTSL 5 BASIC10.89□□□□□ -0.67
CUX1P39880 AC012038.2-201ENST00000553006 256 ntTSL 3 BASIC10.89□□□□□ -0.67
CUX1P39880 LINC01676-209ENST00000623043 896 ntTSL 4 BASIC10.89□□□□□ -0.67
CUX1P39880 IQCJ-SCHIP1-205ENST00000527095 1410 ntAPPRIS ALT2 TSL 5 BASIC10.88□□□□□ -0.67
CUX1P39880 IREB2-208ENST00000560440 4396 ntTSL 1 (best) BASIC10.88□□□□□ -0.67
CUX1P39880 ZNF793-208ENST00000588578 4549 ntTSL 1 (best) BASIC10.88□□□□□ -0.67
CUX1P39880 AL390726.6-201ENST00000637760 1654 ntTSL 5 BASIC10.88□□□□□ -0.67
CUX1P39880 TNFAIP8-206ENST00000504771 8681 ntTSL 1 (best) BASIC10.88□□□□□ -0.67
CUX1P39880 NHSL2-207ENST00000633930 13660 ntAPPRIS P1 TSL 5 BASIC10.88□□□□□ -0.67
CUX1P39880 ZNF329-201ENST00000358067 3290 ntAPPRIS P1 TSL 2 BASIC10.88□□□□□ -0.67
CUX1P39880 CTPS1-201ENST00000372616 2037 ntAPPRIS P1 TSL 2 BASIC10.88□□□□□ -0.67
CUX1P39880 TLR7-201ENST00000380659 5011 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.67
CUX1P39880 RGPD1-206ENST00000641458 5271 ntAPPRIS ALT2 BASIC10.88□□□□□ -0.67
CUX1P39880 OR5H1-202ENST00000641874 5999 ntAPPRIS P1 BASIC10.88□□□□□ -0.67
CUX1P39880 LTBP1-207ENST00000418533 5164 ntTSL 1 (best) BASIC10.88□□□□□ -0.67
CUX1P39880 ZSCAN31-203ENST00000414429 3551 ntAPPRIS P1 TSL 2 BASIC10.88□□□□□ -0.67
CUX1P39880 PTPN3-204ENST00000446349 8630 ntTSL 1 (best) BASIC10.88□□□□□ -0.67
CUX1P39880 RNU1-150P-201ENST00000362491 162 ntBASIC10.88□□□□□ -0.67
CUX1P39880 AL096711.1-201ENST00000404780 554 ntBASIC10.88□□□□□ -0.67
CUX1P39880 RN7SKP144-201ENST00000411108 279 ntBASIC10.88□□□□□ -0.67
CUX1P39880 AL583839.2-201ENST00000443716 641 ntTSL 3 BASIC10.88□□□□□ -0.67
CUX1P39880 AC246785.3-201ENST00000455105 314 ntTSL 5 BASIC10.88□□□□□ -0.67
CUX1P39880 AL359265.3-201ENST00000456125 579 ntTSL 5 BASIC10.88□□□□□ -0.67
CUX1P39880 LINCR-0001-202ENST00000518098 524 ntTSL 4 BASIC10.88□□□□□ -0.67
CUX1P39880 AC063926.1-201ENST00000539532 415 ntTSL 2 BASIC10.88□□□□□ -0.67
CUX1P39880 AC079793.1-201ENST00000553076 713 ntTSL 4 BASIC10.88□□□□□ -0.67
CUX1P39880 AC007601.2-201ENST00000566957 502 ntTSL 3 BASIC10.88□□□□□ -0.67
CUX1P39880 MIR4443-201ENST00000585052 53 ntBASIC10.88□□□□□ -0.67
CUX1P39880 AC141930.3-201ENST00000640435 762 ntTSL 5 BASIC10.88□□□□□ -0.67
CUX1P39880 MTCO1P28-201ENST00000574177 1528 ntBASIC10.88□□□□□ -0.67
CUX1P39880 UGT2B25P-201ENST00000511504 1586 ntBASIC10.88□□□□□ -0.67
CUX1P39880 DCLK1-202ENST00000360631 8007 ntAPPRIS ALT2 TSL 5 BASIC10.88□□□□□ -0.67
CUX1P39880 PPWD1-214ENST00000535264 2195 ntTSL 2 BASIC10.88□□□□□ -0.67
CUX1P39880 TRIM34-201ENST00000429814 2311 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.67
CUX1P39880 C11orf72-201ENST00000333139 2431 ntTSL 2 BASIC10.88□□□□□ -0.67
CUX1P39880 DMBT1-203ENST00000344338 7656 ntAPPRIS ALT2 TSL 1 (best) BASIC10.88□□□□□ -0.67
CUX1P39880 DMBT1-205ENST00000368955 7656 ntAPPRIS ALT2 TSL 5 BASIC10.88□□□□□ -0.67
CUX1P39880 TMEM167A-201ENST00000502346 4630 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
CUX1P39880 OAS2-202ENST00000392583 4734 ntAPPRIS ALT2 TSL 1 (best) BASIC10.87□□□□□ -0.67
CUX1P39880 ZEB2-232ENST00000636026 5172 ntTSL 5 BASIC10.87□□□□□ -0.67
CUX1P39880 CLNK-204ENST00000515667 4180 ntAPPRIS ALT2 TSL 3 BASIC10.87□□□□□ -0.67
CUX1P39880 SLC2A14-201ENST00000340749 3699 ntAPPRIS ALT2 TSL 2 BASIC10.87□□□□□ -0.67
CUX1P39880 SLC14A2-203ENST00000586448 3540 ntAPPRIS P1 TSL 2 BASIC10.87□□□□□ -0.67
CUX1P39880 MID1-204ENST00000380782 3352 ntTSL 1 (best) BASIC10.87□□□□□ -0.67
CUX1P39880 SLC26A5-205ENST00000393723 2174 ntTSL 1 (best) BASIC10.87□□□□□ -0.67
CUX1P39880 DEFB132-201ENST00000382376 2121 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
CUX1P39880 HSPD1P9-201ENST00000420325 1636 ntBASIC10.87□□□□□ -0.67
CUX1P39880 AL049697.3-201ENST00000406493 982 ntBASIC10.87□□□□□ -0.67
CUX1P39880 AC092634.4-201ENST00000419937 423 ntTSL 3 BASIC10.87□□□□□ -0.67
CUX1P39880 RPS7P14-201ENST00000426405 583 ntBASIC10.87□□□□□ -0.67
CUX1P39880 AC002553.3-201ENST00000453002 341 ntBASIC10.87□□□□□ -0.67
CUX1P39880 PSMA2P2-201ENST00000504319 686 ntBASIC10.87□□□□□ -0.67
CUX1P39880 OR5H7P-201ENST00000514084 930 ntBASIC10.87□□□□□ -0.67
CUX1P39880 HAND2-AS1-233ENST00000515345 797 ntTSL 3 BASIC10.87□□□□□ -0.67
CUX1P39880 AC103726.2-201ENST00000523318 411 ntTSL 2 BASIC10.87□□□□□ -0.67
CUX1P39880 OR9L1P-201ENST00000529493 933 ntBASIC10.87□□□□□ -0.67
CUX1P39880 HTATIP2-207ENST00000532081 774 ntTSL 1 (best) BASIC10.87□□□□□ -0.67
CUX1P39880 CLEC2B-202ENST00000538152 745 ntTSL 2 BASIC10.87□□□□□ -0.67
CUX1P39880 AC009097.1-201ENST00000567077 406 ntTSL 3 BASIC10.87□□□□□ -0.67
CUX1P39880 AP005230.1-204ENST00000579097 779 ntTSL 2 BASIC10.87□□□□□ -0.67
CUX1P39880 LY86-AS1-206ENST00000607278 677 ntTSL 3 BASIC10.87□□□□□ -0.67
Retrieved 100 of 98,524 protein–RNA pairs in 88.5 ms