Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 BTN3A2-203ENST00000396934 3672 ntAPPRIS ALT2 TSL 2 BASIC5.17□□□□□ -1.58
HLA-DMBP28068 IFT74-202ENST00000429045 1462 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
HLA-DMBP28068 CASC15-201ENST00000444265 1497 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
HLA-DMBP28068 BDNF-217ENST00000533131 3878 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
HLA-DMBP28068 CNTN5-204ENST00000524871 6258 ntAPPRIS P4 TSL 1 (best) BASIC5.17□□□□□ -1.58
HLA-DMBP28068 ZNF880-202ENST00000422689 2230 ntAPPRIS P1 TSL 2 BASIC5.17□□□□□ -1.58
HLA-DMBP28068 AC096992.2-201ENST00000609553 1684 ntBASIC5.17□□□□□ -1.58
HLA-DMBP28068 COMMD2-203ENST00000473414 3706 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
HLA-DMBP28068 ZNF415-204ENST00000594011 2630 ntTSL 2 BASIC5.17□□□□□ -1.58
HLA-DMBP28068 HECW2-201ENST00000260983 11809 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
HLA-DMBP28068 FRMD3-207ENST00000621208 5064 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
HLA-DMBP28068 ERCC6L-202ENST00000373657 4344 ntAPPRIS ALT2 TSL 2 BASIC5.17□□□□□ -1.58
HLA-DMBP28068 ZNF253-201ENST00000355650 2268 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
HLA-DMBP28068 AL136317.2-201ENST00000619851 2254 ntTSL 2 BASIC5.17□□□□□ -1.58
HLA-DMBP28068 ZNF92-201ENST00000328747 3210 ntAPPRIS P3 TSL 1 (best) BASIC5.17□□□□□ -1.58
HLA-DMBP28068 APOL4-203ENST00000352371 3227 ntAPPRIS P4 TSL 1 (best) BASIC5.17□□□□□ -1.58
HLA-DMBP28068 IL5RA-209ENST00000446632 2514 ntAPPRIS P4 TSL 5 BASIC5.17□□□□□ -1.58
HLA-DMBP28068 GTDC1-204ENST00000392869 10514 ntAPPRIS P1 TSL 5 BASIC5.17□□□□□ -1.58
HLA-DMBP28068 AKAP5-202ENST00000394718 6487 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
HLA-DMBP28068 FO082842.1-201ENST00000423552 1370 ntBASIC5.16□□□□□ -1.58
HLA-DMBP28068 ROR1-AS1-201ENST00000412349 1574 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
HLA-DMBP28068 AQP4-205ENST00000581374 1586 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
HLA-DMBP28068 ST7-203ENST00000393443 2360 ntTSL 2 BASIC5.16□□□□□ -1.58
HLA-DMBP28068 OR4K13-202ENST00000641664 5980 ntAPPRIS P1 BASIC5.16□□□□□ -1.58
HLA-DMBP28068 ZNF227-201ENST00000313040 3043 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
HLA-DMBP28068 LINC01981-201ENST00000432163 2833 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
HLA-DMBP28068 CHRM3-AS2-201ENST00000427859 2431 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
HLA-DMBP28068 AC009120.2-204ENST00000621548 2032 ntBASIC5.16□□□□□ -1.58
HLA-DMBP28068 EEF1A1P28-201ENST00000450915 1403 ntBASIC5.16□□□□□ -1.58
HLA-DMBP28068 ZC3H11A-204ENST00000367214 3451 ntAPPRIS P1 TSL 2 BASIC5.16□□□□□ -1.58
HLA-DMBP28068 ZNF540-201ENST00000316433 3099 ntAPPRIS P3 TSL 1 (best) BASIC5.16□□□□□ -1.58
HLA-DMBP28068 CCDC186-203ENST00000369287 7245 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
HLA-DMBP28068 AC079949.2-201ENST00000617117 2933 ntBASIC5.16□□□□□ -1.58
HLA-DMBP28068 PARD3B-213ENST00000614500 7538 ntTSL 5 BASIC5.16□□□□□ -1.58
HLA-DMBP28068 FUNDC2P3-201ENST00000334716 533 ntBASIC5.16□□□□□ -1.58
HLA-DMBP28068 RNU12-2P-201ENST00000364789 156 ntBASIC5.16□□□□□ -1.58
HLA-DMBP28068 AL359922.1-201ENST00000404796 935 ntAPPRIS P1 TSL 5 BASIC5.16□□□□□ -1.58
HLA-DMBP28068 BX284668.3-201ENST00000414128 882 ntTSL 5 BASIC5.16□□□□□ -1.58
HLA-DMBP28068 AL669831.5-205ENST00000429505 441 ntTSL 3 BASIC5.16□□□□□ -1.58
HLA-DMBP28068 NDUFB3-202ENST00000433898 503 ntAPPRIS P1 TSL 2 BASIC5.16□□□□□ -1.58
HLA-DMBP28068 LDHAP2-201ENST00000437325 985 ntBASIC5.16□□□□□ -1.58
HLA-DMBP28068 LAPTM4BP1-201ENST00000447781 690 ntBASIC5.16□□□□□ -1.58
HLA-DMBP28068 AC147651.1-201ENST00000453149 572 ntTSL 2 BASIC5.16□□□□□ -1.58
HLA-DMBP28068 MED28P7-201ENST00000456611 530 ntBASIC5.16□□□□□ -1.58
HLA-DMBP28068 SEC62-AS1-201ENST00000479626 346 ntTSL 5 BASIC5.16□□□□□ -1.58
HLA-DMBP28068 RN7SL561P-201ENST00000488553 281 ntBASIC5.16□□□□□ -1.58
HLA-DMBP28068 RN7SL187P-201ENST00000495587 303 ntBASIC5.16□□□□□ -1.58
HLA-DMBP28068 AC063943.2-201ENST00000495697 534 ntBASIC5.16□□□□□ -1.58
HLA-DMBP28068 PPP4R1L-209ENST00000497138 4680 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
HLA-DMBP28068 RCHY1-206ENST00000507014 650 ntTSL 3 BASIC5.16□□□□□ -1.58
HLA-DMBP28068 AL158068.2-201ENST00000510632 563 ntTSL 4 BASIC5.16□□□□□ -1.58
HLA-DMBP28068 AC114940.1-201ENST00000512162 1265 ntBASIC5.16□□□□□ -1.58
HLA-DMBP28068 RNA5SP96-201ENST00000516041 107 ntBASIC5.16□□□□□ -1.58
HLA-DMBP28068 IGHVII-51-2-201ENST00000519778 259 ntBASIC5.16□□□□□ -1.58
HLA-DMBP28068 AC022639.1-202ENST00000524360 581 ntTSL 4 BASIC5.16□□□□□ -1.58
HLA-DMBP28068 DCN-215ENST00000550099 719 ntTSL 2 BASIC5.16□□□□□ -1.58
HLA-DMBP28068 AC021979.2-201ENST00000553644 209 ntTSL 5 BASIC5.16□□□□□ -1.58
HLA-DMBP28068 AL049870.3-201ENST00000555157 360 ntTSL 2 BASIC5.16□□□□□ -1.58
HLA-DMBP28068 LRRC36-205ENST00000563189 2104 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
HLA-DMBP28068 Z98949.1-210ENST00000597548 766 ntTSL 5 BASIC5.16□□□□□ -1.58
HLA-DMBP28068 5S_rRNA.23-201ENST00000612086 102 ntBASIC5.16□□□□□ -1.58
HLA-DMBP28068 AC007671.1-201ENST00000616957 830 ntBASIC5.16□□□□□ -1.58
HLA-DMBP28068 ALKAL2-208ENST00000619265 496 ntTSL 2 BASIC5.16□□□□□ -1.58
HLA-DMBP28068 AC073862.4-201ENST00000622982 854 ntBASIC5.16□□□□□ -1.58
HLA-DMBP28068 CAMK2D-202ENST00000342666 1940 ntTSL 5 BASIC5.16□□□□□ -1.58
HLA-DMBP28068 CEACAM1-207ENST00000403444 3427 ntAPPRIS ALT2 TSL 1 (best) BASIC5.16□□□□□ -1.58
HLA-DMBP28068 PCLO-203ENST00000423517 17147 ntTSL 5 BASIC5.16□□□□□ -1.58
HLA-DMBP28068 AC022905.1-201ENST00000503430 3048 ntBASIC5.16□□□□□ -1.58
HLA-DMBP28068 AL133284.1-201ENST00000423715 4996 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
HLA-DMBP28068 PPP2R3A-202ENST00000334546 2196 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
HLA-DMBP28068 GBA3-206ENST00000610628 2154 ntAPPRIS ALT2 TSL 5 BASIC5.16□□□□□ -1.58
HLA-DMBP28068 TMEM230-204ENST00000379277 1536 ntAPPRIS P1 TSL 3 BASIC5.16□□□□□ -1.58
HLA-DMBP28068 TMEM135-201ENST00000305494 2433 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
HLA-DMBP28068 PRLR-216ENST00000542609 1764 ntTSL 5 BASIC5.16□□□□□ -1.58
HLA-DMBP28068 WDR72-208ENST00000614174 4224 ntTSL 2 BASIC5.16□□□□□ -1.58
HLA-DMBP28068 HAUS3-201ENST00000243706 5620 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
HLA-DMBP28068 PLCE1-203ENST00000371385 6500 ntAPPRIS ALT2 TSL 5 BASIC5.16□□□□□ -1.58
HLA-DMBP28068 CDY5P-201ENST00000411487 1580 ntBASIC5.16□□□□□ -1.58
HLA-DMBP28068 CDY9P-201ENST00000451397 1580 ntBASIC5.16□□□□□ -1.58
HLA-DMBP28068 LINC02092-201ENST00000455366 2472 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
HLA-DMBP28068 HTR2A-202ENST00000542664 5429 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
HLA-DMBP28068 TDRD1-201ENST00000251864 4510 ntAPPRIS P2 TSL 1 (best) BASIC5.16□□□□□ -1.58
HLA-DMBP28068 MAGEB16-204ENST00000399989 1818 ntAPPRIS P2 TSL 5 BASIC5.16□□□□□ -1.58
HLA-DMBP28068 OR7A10-202ENST00000641129 1847 ntAPPRIS P1 BASIC5.16□□□□□ -1.58
HLA-DMBP28068 COG2-209ENST00000534989 2963 ntTSL 2 BASIC5.16□□□□□ -1.58
HLA-DMBP28068 TRMT10A-202ENST00000394876 1638 ntAPPRIS P1 TSL 1 (best) BASIC5.15□□□□□ -1.58
HLA-DMBP28068 UPF2-201ENST00000356352 5569 ntAPPRIS P1 TSL 1 (best) BASIC5.15□□□□□ -1.58
HLA-DMBP28068 PLEKHH2-201ENST00000282406 6981 ntAPPRIS P1 TSL 1 (best) BASIC5.15□□□□□ -1.58
HLA-DMBP28068 RBMY1A3P-201ENST00000382670 1404 ntBASIC5.15□□□□□ -1.58
HLA-DMBP28068 GCNT2-203ENST00000379597 4525 ntAPPRIS ALT1 TSL 1 (best) BASIC5.15□□□□□ -1.58
HLA-DMBP28068 AL451064.2-201ENST00000623514 1654 ntBASIC5.15□□□□□ -1.58
HLA-DMBP28068 BICRAL-202ENST00000394168 6515 ntAPPRIS P1 TSL 1 (best) BASIC5.15□□□□□ -1.58
HLA-DMBP28068 ARHGEF3-214ENST00000497267 2197 ntTSL 2 BASIC5.15□□□□□ -1.58
HLA-DMBP28068 NUMB-204ENST00000535282 3198 ntAPPRIS ALT1 TSL 5 BASIC5.15□□□□□ -1.58
HLA-DMBP28068 ZNF658B-201ENST00000602828 3408 ntBASIC5.15□□□□□ -1.58
HLA-DMBP28068 CSNK2A1-204ENST00000400227 1499 ntTSL 1 (best) BASIC5.15□□□□□ -1.58
HLA-DMBP28068 LINC00702-203ENST00000608792 6300 ntTSL 4 BASIC5.15□□□□□ -1.58
HLA-DMBP28068 HRG-201ENST00000232003 2015 ntAPPRIS P1 TSL 1 (best) BASIC5.15□□□□□ -1.58
HLA-DMBP28068 LINC01991-202ENST00000446091 1524 ntTSL 2 BASIC5.15□□□□□ -1.58
HLA-DMBP28068 ADH1B-205ENST00000625860 4059 ntTSL 1 (best) BASIC5.15□□□□□ -1.58
Retrieved 100 of 98,524 protein–RNA pairs in 74.6 ms