Protein–RNA interactions for Protein: Q9NZR4

VSX1, Visual system homeobox 1, humanhuman

Predicted RBP Predictions only

Length 365 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1Q9NZR4 MFSD10-211ENST00000514800 1776 ntTSL 5 BASIC17.75■□□□□ 0.43
VSX1Q9NZR4 DMRT2-205ENST00000382255 2367 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
VSX1Q9NZR4 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
VSX1Q9NZR4 EYA2-210ENST00000611592 2612 ntTSL 5 BASIC17.75■□□□□ 0.43
VSX1Q9NZR4 ACOT2-205ENST00000622407 1604 ntAPPRIS ALT1 TSL 1 (best) BASIC17.75■□□□□ 0.43
VSX1Q9NZR4 DOK1-201ENST00000233668 2555 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
VSX1Q9NZR4 CBLN2-201ENST00000269503 2945 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
VSX1Q9NZR4 NEIL3-201ENST00000264596 2408 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
VSX1Q9NZR4 EGFR-204ENST00000420316 1570 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
VSX1Q9NZR4 AGAP5-203ENST00000581191 2779 ntAPPRIS ALT2 TSL 5 BASIC17.74■□□□□ 0.43
VSX1Q9NZR4 ALKBH7-201ENST00000245812 1332 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
VSX1Q9NZR4 JMJD4-202ENST00000438896 2502 ntTSL 2 BASIC17.74■□□□□ 0.43
VSX1Q9NZR4 BIN2-210ENST00000615107 2255 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
VSX1Q9NZR4 TNFRSF25-203ENST00000351959 1441 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
VSX1Q9NZR4 ETV7-206ENST00000615781 1776 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
VSX1Q9NZR4 FGF14-IT1-202ENST00000607251 2123 ntTSL 2 BASIC17.74■□□□□ 0.43
VSX1Q9NZR4 GIT1-201ENST00000225394 3768 ntAPPRIS P3 TSL 1 (best) BASIC17.74■□□□□ 0.43
VSX1Q9NZR4 NAPSA-201ENST00000253719 1548 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
VSX1Q9NZR4 TREX2-206ENST00000370232 1864 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
VSX1Q9NZR4 PRTN3-201ENST00000234347 1026 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
VSX1Q9NZR4 UBE2C-203ENST00000352551 665 ntTSL 2 BASIC17.74■□□□□ 0.43
VSX1Q9NZR4 HLA-G-202ENST00000376815 851 ntBASIC17.74■□□□□ 0.43
VSX1Q9NZR4 HLA-G-203ENST00000376818 1127 ntBASIC17.74■□□□□ 0.43
VSX1Q9NZR4 ZCCHC9-204ENST00000438268 1248 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
VSX1Q9NZR4 HAGHL-213ENST00000564545 663 ntTSL 3 BASIC17.74■□□□□ 0.43
VSX1Q9NZR4 ZNF263-205ENST00000574253 1139 ntTSL 2 BASIC17.74■□□□□ 0.43
VSX1Q9NZR4 AC133552.2-202ENST00000575694 574 ntBASIC17.74■□□□□ 0.43
VSX1Q9NZR4 CAPNS1-205ENST00000588780 1035 ntAPPRIS ALT2 TSL 5 BASIC17.74■□□□□ 0.43
VSX1Q9NZR4 AC104581.1-201ENST00000324348 2852 ntAPPRIS P1 TSL 2 BASIC17.74■□□□□ 0.43
VSX1Q9NZR4 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC17.74■□□□□ 0.43
VSX1Q9NZR4 RWDD4-206ENST00000512740 1393 ntTSL 5 BASIC17.74■□□□□ 0.43
VSX1Q9NZR4 ORAI3-204ENST00000566237 1393 ntTSL 5 BASIC17.74■□□□□ 0.43
VSX1Q9NZR4 FSTL1-201ENST00000295633 5943 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
VSX1Q9NZR4 ETV2-202ENST00000379026 1571 ntAPPRIS ALT2 TSL 2 BASIC17.74■□□□□ 0.43
VSX1Q9NZR4 KLF16-201ENST00000250916 2890 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
VSX1Q9NZR4 KRT17P1-201ENST00000399211 1546 ntBASIC17.73■□□□□ 0.43
VSX1Q9NZR4 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
VSX1Q9NZR4 MTSS1L-201ENST00000338779 4992 ntAPPRIS P2 TSL 1 (best) BASIC17.73■□□□□ 0.43
VSX1Q9NZR4 KLHL11-201ENST00000319121 2383 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
VSX1Q9NZR4 HSPD1-202ENST00000388968 2455 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
VSX1Q9NZR4 AC107959.1-202ENST00000502083 1945 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
VSX1Q9NZR4 UPF1-201ENST00000262803 5348 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
VSX1Q9NZR4 BCL2L12-201ENST00000246784 990 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
VSX1Q9NZR4 PGPEP1L-201ENST00000378919 995 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
VSX1Q9NZR4 IL15RA-207ENST00000397250 584 ntTSL 2 BASIC17.73■□□□□ 0.43
VSX1Q9NZR4 FGF12-AS2-201ENST00000443165 580 ntTSL 4 BASIC17.73■□□□□ 0.43
VSX1Q9NZR4 ZNF148-203ENST00000468369 1025 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
VSX1Q9NZR4 SMIM20-201ENST00000506197 935 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
VSX1Q9NZR4 FBXL8-203ENST00000518148 1054 ntTSL 2 BASIC17.73■□□□□ 0.43
VSX1Q9NZR4 AC023632.3-201ENST00000521633 145 ntBASIC17.73■□□□□ 0.43
VSX1Q9NZR4 IL15RA-215ENST00000528354 1037 ntTSL 2 BASIC17.73■□□□□ 0.43
VSX1Q9NZR4 C17orf49-202ENST00000546495 996 ntAPPRIS ALT1 TSL 2 BASIC17.73■□□□□ 0.43
VSX1Q9NZR4 LYRM1-205ENST00000562740 931 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
VSX1Q9NZR4 IL15RA-220ENST00000620345 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
VSX1Q9NZR4 PTCD3-220ENST00000627371 210 ntTSL 5 BASIC17.73■□□□□ 0.43
VSX1Q9NZR4 AC006001.3-204ENST00000638711 2103 ntTSL 5 BASIC17.73■□□□□ 0.43
VSX1Q9NZR4 IRGQ-205ENST00000602269 2210 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
VSX1Q9NZR4 ARHGAP27-201ENST00000290470 1376 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
VSX1Q9NZR4 TBXA2R-202ENST00000411851 1494 ntTSL 2 BASIC17.73■□□□□ 0.43
VSX1Q9NZR4 PSMD8-201ENST00000215071 1553 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
VSX1Q9NZR4 WDR90-201ENST00000293879 5488 ntAPPRIS P2 TSL 5 BASIC17.73■□□□□ 0.43
VSX1Q9NZR4 EPS8L1-203ENST00000540810 2360 ntTSL 2 BASIC17.73■□□□□ 0.43
VSX1Q9NZR4 KCTD15-202ENST00000430256 2555 ntAPPRIS P1 TSL 2 BASIC17.73■□□□□ 0.43
VSX1Q9NZR4 ZNF331-214ENST00000511154 2120 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
VSX1Q9NZR4 AL158211.5-201ENST00000623583 2518 ntBASIC17.72■□□□□ 0.43
VSX1Q9NZR4 INSM1-201ENST00000310227 2829 ntAPPRIS P1 BASIC17.72■□□□□ 0.43
VSX1Q9NZR4 TOR1B-201ENST00000259339 2769 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
VSX1Q9NZR4 AC138932.1-201ENST00000534164 6830 ntBASIC17.72■□□□□ 0.43
VSX1Q9NZR4 THOP1-202ENST00000395212 1877 ntTSL 2 BASIC17.72■□□□□ 0.43
VSX1Q9NZR4 FGFRL1-203ENST00000504138 1663 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
VSX1Q9NZR4 HAUS4-202ENST00000342454 1474 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
VSX1Q9NZR4 RAB11FIP5-201ENST00000258098 4342 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
VSX1Q9NZR4 EIF5A-205ENST00000419711 1271 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
VSX1Q9NZR4 HES2-205ENST00000487437 968 ntTSL 3 BASIC17.72■□□□□ 0.43
VSX1Q9NZR4 IL34-204ENST00000566361 1001 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
VSX1Q9NZR4 LIMD2-202ENST00000578061 756 ntAPPRIS P1 TSL 2 BASIC17.72■□□□□ 0.43
VSX1Q9NZR4 AC012313.6-201ENST00000599889 790 ntTSL 3 BASIC17.72■□□□□ 0.43
VSX1Q9NZR4 MFSD14C-203ENST00000602917 786 ntAPPRIS P5 TSL 1 (best) BASIC17.72■□□□□ 0.43
VSX1Q9NZR4 AC080038.1-201ENST00000611274 1154 ntBASIC17.72■□□□□ 0.43
VSX1Q9NZR4 AC243773.2-201ENST00000616341 490 ntTSL 2 BASIC17.72■□□□□ 0.43
VSX1Q9NZR4 AL161421.1-201ENST00000619666 1101 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
VSX1Q9NZR4 POU5F1-209ENST00000638788 369 ntTSL 5 BASIC17.72■□□□□ 0.43
VSX1Q9NZR4 CCDC62-204ENST00000392441 2936 ntAPPRIS ALT2 TSL 5 BASIC17.72■□□□□ 0.43
VSX1Q9NZR4 ADAD1-202ENST00000388724 1912 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
VSX1Q9NZR4 RNH1-206ENST00000438658 1725 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
VSX1Q9NZR4 ANKRD2-202ENST00000307518 1449 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
VSX1Q9NZR4 CCS-208ENST00000533244 1430 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
VSX1Q9NZR4 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC17.72■□□□□ 0.43
VSX1Q9NZR4 NXN-202ENST00000537628 1340 ntTSL 3 BASIC17.72■□□□□ 0.43
VSX1Q9NZR4 DEDD2-204ENST00000595337 1894 ntAPPRIS P3 TSL 3 BASIC17.71■□□□□ 0.43
VSX1Q9NZR4 ATOH8-201ENST00000306279 2438 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
VSX1Q9NZR4 ANKRD40-201ENST00000285243 4184 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
VSX1Q9NZR4 CBLC-201ENST00000270279 1579 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
VSX1Q9NZR4 FAM216A-201ENST00000377673 1582 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
VSX1Q9NZR4 DTD1-201ENST00000377452 1387 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
VSX1Q9NZR4 TRPT1-201ENST00000317459 962 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.43
VSX1Q9NZR4 LRR1-202ENST00000318317 957 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
VSX1Q9NZR4 ABHD14A-202ENST00000458031 1113 ntTSL 5 BASIC17.71■□□□□ 0.43
VSX1Q9NZR4 ISCU-212ENST00000547005 795 ntTSL 3 BASIC17.71■□□□□ 0.43
VSX1Q9NZR4 BEAN1-AS1-201ENST00000564618 533 ntTSL 4 BASIC17.71■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 38.6 ms