Protein–RNA interactions for Protein: Q96MR9

ZNF560, Zinc finger protein 560, humanhuman

Predictions only

Length 790 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF560Q96MR9 ACTR8-202ENST00000482349 2091 ntTSL 2 BASIC21.28■■□□□ 1
ZNF560Q96MR9 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC21.28■■□□□ 1
ZNF560Q96MR9 DTWD1-202ENST00000403028 1584 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
ZNF560Q96MR9 MSLN-201ENST00000382862 2116 ntAPPRIS P3 TSL 5 BASIC21.28■■□□□ 1
ZNF560Q96MR9 CRHR1-203ENST00000339069 2490 ntTSL 2 BASIC21.28■■□□□ 1
ZNF560Q96MR9 CD151-213ENST00000528011 1369 ntAPPRIS ALT1 TSL 5 BASIC21.28■■□□□ 1
ZNF560Q96MR9 LENG9-203ENST00000611161 1916 ntAPPRIS P1 BASIC21.28■■□□□ 1
ZNF560Q96MR9 ITGBL1-206ENST00000618057 2368 ntTSL 1 (best) BASIC21.28■■□□□ 1
ZNF560Q96MR9 AC069185.1-201ENST00000531395 811 ntTSL 3 BASIC21.28■■□□□ 1
ZNF560Q96MR9 NOXO1-205ENST00000566005 1144 ntTSL 1 (best) BASIC21.28■■□□□ 1
ZNF560Q96MR9 GAS2-202ENST00000454584 2286 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
ZNF560Q96MR9 MCEMP1-201ENST00000333598 1730 ntAPPRIS P2 TSL 1 (best) BASIC21.28■■□□□ 1
ZNF560Q96MR9 AKR7A3-201ENST00000361640 1710 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
ZNF560Q96MR9 NRM-203ENST00000376421 1734 ntAPPRIS P2 TSL 1 (best) BASIC21.28■■□□□ 1
ZNF560Q96MR9 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC21.28■■□□□ 1
ZNF560Q96MR9 SMIM10L2A-201ENST00000417443 5230 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
ZNF560Q96MR9 BCKDK-203ENST00000394950 1997 ntTSL 2 BASIC21.28■■□□□ 1
ZNF560Q96MR9 CECR2-202ENST00000342247 6178 ntAPPRIS ALT2 TSL 5 BASIC21.28■■□□□ 1
ZNF560Q96MR9 HOXC13-AS-201ENST00000512916 1408 ntTSL 3 BASIC21.28■■□□□ 1
ZNF560Q96MR9 EIF2B1-204ENST00000537073 1768 ntTSL 2 BASIC21.28■■□□□ 1
ZNF560Q96MR9 RUFY3-203ENST00000417478 2143 ntTSL 1 (best) BASIC21.28■■□□□ 1
ZNF560Q96MR9 COQ10A-201ENST00000308197 1652 ntAPPRIS P3 TSL 1 (best) BASIC21.28■■□□□ 1
ZNF560Q96MR9 NUDT11-201ENST00000375992 2385 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
ZNF560Q96MR9 MEDAG-201ENST00000380482 2374 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
ZNF560Q96MR9 FSTL3-201ENST00000166139 2542 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
ZNF560Q96MR9 POLD2-202ENST00000406581 2158 ntAPPRIS P1 TSL 2 BASIC21.27■■□□□ 1
ZNF560Q96MR9 OLA1-204ENST00000409546 2071 ntTSL 5 BASIC21.27■■□□□ 1
ZNF560Q96MR9 TRIB3-201ENST00000217233 2499 ntAPPRIS P3 TSL 1 (best) BASIC21.27■■□□□ 1
ZNF560Q96MR9 KMT5B-204ENST00000402185 1881 ntTSL 2 BASIC21.27■■□□□ 1
ZNF560Q96MR9 PANK1-201ENST00000307534 6976 ntTSL 1 (best) BASIC21.27■■□□□ 1
ZNF560Q96MR9 TSTD1-201ENST00000318289 626 ntAPPRIS P3 TSL 1 (best) BASIC21.27■■□□□ 1
ZNF560Q96MR9 PFN3-201ENST00000358571 530 ntAPPRIS P1 BASIC21.27■■□□□ 1
ZNF560Q96MR9 PSMG1-202ENST00000380900 907 ntTSL 1 (best) BASIC21.27■■□□□ 1
ZNF560Q96MR9 YBEY-205ENST00000397694 534 ntTSL 1 (best) BASIC21.27■■□□□ 1
ZNF560Q96MR9 GPR35-203ENST00000407714 1258 ntAPPRIS P3 TSL 1 (best) BASIC21.27■■□□□ 1
ZNF560Q96MR9 TNFRSF18-204ENST00000486728 727 ntAPPRIS ALT2 TSL 1 (best) BASIC21.27■■□□□ 1
ZNF560Q96MR9 AC093827.2-201ENST00000512654 315 ntBASIC21.27■■□□□ 1
ZNF560Q96MR9 DHRS4-206ENST00000558581 1143 ntTSL 1 (best) BASIC21.27■■□□□ 1
ZNF560Q96MR9 LRRC75A-AS1-225ENST00000581913 1091 ntTSL 2 BASIC21.27■■□□□ 1
ZNF560Q96MR9 ELAC1-203ENST00000588577 694 ntTSL 2 BASIC21.27■■□□□ 1
ZNF560Q96MR9 USP36-216ENST00000589424 970 ntTSL 5 BASIC21.27■■□□□ 1
ZNF560Q96MR9 IRX4-206ENST00000513692 2391 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
ZNF560Q96MR9 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC21.27■■□□□ 1
ZNF560Q96MR9 SMYD2-201ENST00000366957 1671 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
ZNF560Q96MR9 TANGO2-217ENST00000456048 2439 ntTSL 2 BASIC21.27■■□□□ 1
ZNF560Q96MR9 CAMKK2-206ENST00000402834 2051 ntAPPRIS P4 TSL 1 (best) BASIC21.27■□□□□ 0.99
ZNF560Q96MR9 TMEM191C-214ENST00000621561 1337 ntAPPRIS P2 TSL 5 BASIC21.27■□□□□ 0.99
ZNF560Q96MR9 ZDHHC14-203ENST00000359775 7380 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
ZNF560Q96MR9 NBPF21P-201ENST00000425093 1451 ntBASIC21.26■□□□□ 0.99
ZNF560Q96MR9 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
ZNF560Q96MR9 FAM171A2-201ENST00000293443 3160 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
ZNF560Q96MR9 FAM193B-217ENST00000514747 2913 ntAPPRIS P1 TSL 5 BASIC21.26■□□□□ 0.99
ZNF560Q96MR9 TMEM91-203ENST00000392002 1389 ntAPPRIS P1 TSL 2 BASIC21.26■□□□□ 0.99
ZNF560Q96MR9 RNF224-201ENST00000445101 1798 ntAPPRIS P1 TSL 3 BASIC21.26■□□□□ 0.99
ZNF560Q96MR9 CRACR2B-207ENST00000528542 1792 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
ZNF560Q96MR9 NTMT1-210ENST00000613644 1501 ntAPPRIS P1 TSL 3 BASIC21.26■□□□□ 0.99
ZNF560Q96MR9 EPOR-208ENST00000592375 2086 ntTSL 2 BASIC21.26■□□□□ 0.99
ZNF560Q96MR9 MAF1-201ENST00000322428 1677 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
ZNF560Q96MR9 HP1BP3-202ENST00000375000 928 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
ZNF560Q96MR9 METTL21A-204ENST00000425132 869 ntTSL 2 BASIC21.26■□□□□ 0.99
ZNF560Q96MR9 CAPN5-206ENST00000531028 534 ntTSL 5 BASIC21.26■□□□□ 0.99
ZNF560Q96MR9 METTL23-208ENST00000588822 1049 ntTSL 3 BASIC21.26■□□□□ 0.99
ZNF560Q96MR9 FBLN5-202ENST00000342058 2123 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
ZNF560Q96MR9 ANAPC4-201ENST00000315368 2685 ntAPPRIS P3 TSL 1 (best) BASIC21.26■□□□□ 0.99
ZNF560Q96MR9 COMMD7-202ENST00000446419 1343 ntAPPRIS ALT1 TSL 2 BASIC21.26■□□□□ 0.99
ZNF560Q96MR9 MME-217ENST00000616757 1315 ntTSL 5 BASIC21.26■□□□□ 0.99
ZNF560Q96MR9 AC018553.1-201ENST00000616682 1458 ntBASIC21.26■□□□□ 0.99
ZNF560Q96MR9 ACOT2-205ENST00000622407 1604 ntAPPRIS ALT1 TSL 1 (best) BASIC21.26■□□□□ 0.99
ZNF560Q96MR9 AL162377.1-201ENST00000618844 1793 ntBASIC21.25■□□□□ 0.99
ZNF560Q96MR9 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
ZNF560Q96MR9 C17orf58-201ENST00000334461 1535 ntTSL 2 BASIC21.25■□□□□ 0.99
ZNF560Q96MR9 ATP6V0B-213ENST00000532642 1685 ntTSL 2 BASIC21.25■□□□□ 0.99
ZNF560Q96MR9 OLIG2-202ENST00000382357 2578 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
ZNF560Q96MR9 POU5F1-201ENST00000259915 1420 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
ZNF560Q96MR9 SPDYE2-201ENST00000341656 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
ZNF560Q96MR9 RNF135-204ENST00000443677 1261 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
ZNF560Q96MR9 SPDYE2B-202ENST00000455020 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
ZNF560Q96MR9 AC091564.2-201ENST00000527191 399 ntTSL 3 BASIC21.25■□□□□ 0.99
ZNF560Q96MR9 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC21.25■□□□□ 0.99
ZNF560Q96MR9 CABP2-204ENST00000636477 941 ntTSL 5 BASIC21.25■□□□□ 0.99
ZNF560Q96MR9 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC21.25■□□□□ 0.99
ZNF560Q96MR9 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC21.25■□□□□ 0.99
ZNF560Q96MR9 FAM83A-205ENST00000522648 1604 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
ZNF560Q96MR9 ETFA-202ENST00000433983 1346 ntTSL 2 BASIC21.25■□□□□ 0.99
ZNF560Q96MR9 SH3GLB2-202ENST00000372559 1365 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
ZNF560Q96MR9 THOC6-209ENST00000575576 1360 ntTSL 5 BASIC21.24■□□□□ 0.99
ZNF560Q96MR9 SLAIN1-206ENST00000418532 2855 ntAPPRIS ALT2 TSL 5 BASIC21.24■□□□□ 0.99
ZNF560Q96MR9 RAB34-203ENST00000395243 1597 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
ZNF560Q96MR9 GPSM1-203ENST00000392944 1111 ntTSL 3 BASIC21.24■□□□□ 0.99
ZNF560Q96MR9 DUSP15-205ENST00000398084 1256 ntTSL 5 BASIC21.24■□□□□ 0.99
ZNF560Q96MR9 DNAJC27-AS1-204ENST00000428614 780 ntTSL 3 BASIC21.24■□□□□ 0.99
ZNF560Q96MR9 SGO1-AS1-202ENST00000448208 819 ntTSL 3 BASIC21.24■□□□□ 0.99
ZNF560Q96MR9 NDUFB2-203ENST00000461457 559 ntTSL 3 BASIC21.24■□□□□ 0.99
ZNF560Q96MR9 ARMC4P1-202ENST00000576034 643 ntTSL 2 BASIC21.24■□□□□ 0.99
ZNF560Q96MR9 AL024498.1-202ENST00000606652 480 ntTSL 2 BASIC21.24■□□□□ 0.99
ZNF560Q96MR9 DNAH17-AS1-202ENST00000591373 1453 ntTSL 5 BASIC21.24■□□□□ 0.99
ZNF560Q96MR9 E2F1-201ENST00000343380 2503 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
ZNF560Q96MR9 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
ZNF560Q96MR9 EED-201ENST00000263360 2223 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
ZNF560Q96MR9 SYT7-208ENST00000542670 1887 ntTSL 5 BASIC21.24■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 23.2 ms