Protein–RNA interactions for Protein: Q8N6Y0

USHBP1, Usher syndrome type-1C protein-binding protein 1, humanhuman

Predictions only

Length 703 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1Q8N6Y0 ARSA-202ENST00000356098 1895 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
USHBP1Q8N6Y0 EPOR-208ENST00000592375 2086 ntTSL 2 BASIC26.33■■□□□ 1.81
USHBP1Q8N6Y0 DBNL-220ENST00000494774 2117 ntAPPRIS P4 TSL 1 (best) BASIC26.33■■□□□ 1.81
USHBP1Q8N6Y0 FBXO31-207ENST00000618298 1871 ntTSL 5 BASIC26.32■■□□□ 1.8
USHBP1Q8N6Y0 ETV7-203ENST00000373737 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC26.32■■□□□ 1.8
USHBP1Q8N6Y0 PITX1-201ENST00000265340 2406 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
USHBP1Q8N6Y0 AC099329.3-201ENST00000431549 602 ntAPPRIS P1 TSL 4 BASIC26.32■■□□□ 1.8
USHBP1Q8N6Y0 AC103564.1-201ENST00000437330 562 ntTSL 5 BASIC26.32■■□□□ 1.8
USHBP1Q8N6Y0 AC009487.1-202ENST00000437683 402 ntTSL 2 BASIC26.32■■□□□ 1.8
USHBP1Q8N6Y0 AC080023.1-201ENST00000526906 803 ntTSL 2 BASIC26.32■■□□□ 1.8
USHBP1Q8N6Y0 AL031600.3-201ENST00000566287 1124 ntTSL 5 BASIC26.32■■□□□ 1.8
USHBP1Q8N6Y0 CPNE9-202ENST00000383831 1751 ntTSL 5 BASIC26.32■■□□□ 1.8
USHBP1Q8N6Y0 USP39-203ENST00000409470 2034 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
USHBP1Q8N6Y0 GTF3A-201ENST00000381140 1383 ntAPPRIS ALT2 TSL 1 (best) BASIC26.32■■□□□ 1.8
USHBP1Q8N6Y0 BID-203ENST00000399765 1879 ntTSL 2 BASIC26.32■■□□□ 1.8
USHBP1Q8N6Y0 NEUROG1-201ENST00000314744 1668 ntAPPRIS P1 BASIC26.31■■□□□ 1.8
USHBP1Q8N6Y0 SLC35F5-203ENST00000409342 2284 ntTSL 2 BASIC26.31■■□□□ 1.8
USHBP1Q8N6Y0 TTC9-201ENST00000256367 5217 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
USHBP1Q8N6Y0 UGP2-201ENST00000337130 2338 ntAPPRIS P2 TSL 1 (best) BASIC26.31■■□□□ 1.8
USHBP1Q8N6Y0 AP006587.1-201ENST00000534129 1502 ntBASIC26.31■■□□□ 1.8
USHBP1Q8N6Y0 AC007225.1-201ENST00000566331 1836 ntBASIC26.31■■□□□ 1.8
USHBP1Q8N6Y0 VCY1B-201ENST00000250823 550 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
USHBP1Q8N6Y0 VCY-201ENST00000250825 550 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
USHBP1Q8N6Y0 COX5A-201ENST00000322347 1268 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
USHBP1Q8N6Y0 DHRS4L2-202ENST00000397071 1117 ntTSL 2 BASIC26.31■■□□□ 1.8
USHBP1Q8N6Y0 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
USHBP1Q8N6Y0 NPY-202ENST00000405982 565 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
USHBP1Q8N6Y0 DBNL-214ENST00000456905 1241 ntTSL 2 BASIC26.31■■□□□ 1.8
USHBP1Q8N6Y0 C1QL1P1-201ENST00000568105 661 ntBASIC26.31■■□□□ 1.8
USHBP1Q8N6Y0 RAB34-203ENST00000395243 1597 ntTSL 1 (best) BASIC26.31■■□□□ 1.8
USHBP1Q8N6Y0 GATA3-AS1-201ENST00000355358 2214 ntTSL 2 BASIC26.31■■□□□ 1.8
USHBP1Q8N6Y0 UBE2B-201ENST00000265339 2515 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
USHBP1Q8N6Y0 TMEM91-203ENST00000392002 1389 ntAPPRIS P1 TSL 2 BASIC26.31■■□□□ 1.8
USHBP1Q8N6Y0 TWF2-203ENST00000499914 1440 ntTSL 5 BASIC26.31■■□□□ 1.8
USHBP1Q8N6Y0 FAM193A-211ENST00000637812 4885 ntAPPRIS ALT2 TSL 5 BASIC26.3■■□□□ 1.8
USHBP1Q8N6Y0 SH2B1-204ENST00000395532 2529 ntAPPRIS P1 TSL 2 BASIC26.3■■□□□ 1.8
USHBP1Q8N6Y0 TCF7L1-201ENST00000282111 2968 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
USHBP1Q8N6Y0 STK25-204ENST00000405585 1643 ntTSL 2 BASIC26.3■■□□□ 1.8
USHBP1Q8N6Y0 METTL5-201ENST00000260953 1010 ntAPPRIS P2 TSL 1 (best) BASIC26.3■■□□□ 1.8
USHBP1Q8N6Y0 ID1-202ENST00000376112 994 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
USHBP1Q8N6Y0 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC26.3■■□□□ 1.8
USHBP1Q8N6Y0 LINC01786-202ENST00000453732 389 ntTSL 2 BASIC26.3■■□□□ 1.8
USHBP1Q8N6Y0 NEURL1B-202ENST00000520919 1089 ntTSL 1 (best) BASIC26.3■■□□□ 1.8
USHBP1Q8N6Y0 NAPSB-206ENST00000562112 1266 ntBASIC26.3■■□□□ 1.8
USHBP1Q8N6Y0 LY6L-201ENST00000562505 988 ntAPPRIS P1 TSL 5 BASIC26.3■■□□□ 1.8
USHBP1Q8N6Y0 TRAPPC6A-201ENST00000006275 805 ntTSL 1 (best) BASIC26.3■■□□□ 1.8
USHBP1Q8N6Y0 FAM131C-201ENST00000375662 1695 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
USHBP1Q8N6Y0 TMEM230-207ENST00000379286 1735 ntAPPRIS P1 TSL 2 BASIC26.3■■□□□ 1.8
USHBP1Q8N6Y0 KCNK17-202ENST00000453413 1706 ntAPPRIS ALT2 TSL 5 BASIC26.3■■□□□ 1.8
USHBP1Q8N6Y0 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC26.3■■□□□ 1.8
USHBP1Q8N6Y0 CEMP1-202ENST00000567119 1374 ntAPPRIS P2 BASIC26.3■■□□□ 1.8
USHBP1Q8N6Y0 TRABD2A-201ENST00000335459 1844 ntTSL 1 (best) BASIC26.3■■□□□ 1.8
USHBP1Q8N6Y0 MRPL23-AS1-201ENST00000419080 1876 ntTSL 3 BASIC26.3■■□□□ 1.8
USHBP1Q8N6Y0 SCRN2-201ENST00000290216 1548 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
USHBP1Q8N6Y0 ITGB1BP1-203ENST00000359712 2126 ntTSL 2 BASIC26.29■■□□□ 1.8
USHBP1Q8N6Y0 SLC2A8-215ENST00000610552 1763 ntTSL 3 BASIC26.29■■□□□ 1.8
USHBP1Q8N6Y0 ETV7-206ENST00000615781 1776 ntTSL 1 (best) BASIC26.29■■□□□ 1.8
USHBP1Q8N6Y0 MAGI2-AS3-203ENST00000424477 520 ntTSL 4 BASIC26.29■■□□□ 1.8
USHBP1Q8N6Y0 BAALC-AS1-207ENST00000522856 594 ntTSL 3 BASIC26.29■■□□□ 1.8
USHBP1Q8N6Y0 KDM2B-217ENST00000543852 1188 ntTSL 5 BASIC26.29■■□□□ 1.8
USHBP1Q8N6Y0 SIGLEC15-202ENST00000546268 1054 ntTSL 2 BASIC26.29■■□□□ 1.8
USHBP1Q8N6Y0 AL049597.2-201ENST00000565575 961 ntBASIC26.29■■□□□ 1.8
USHBP1Q8N6Y0 MCRIP1-206ENST00000573478 1123 ntTSL 2 BASIC26.29■■□□□ 1.8
USHBP1Q8N6Y0 C19orf25-206ENST00000588849 1472 ntTSL 5 BASIC26.29■■□□□ 1.8
USHBP1Q8N6Y0 AC116351.2-201ENST00000606540 1585 ntBASIC26.29■■□□□ 1.8
USHBP1Q8N6Y0 CIDEB-201ENST00000258807 2294 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
USHBP1Q8N6Y0 WASH6P-203ENST00000460206 1826 ntTSL 5 BASIC26.28■■□□□ 1.8
USHBP1Q8N6Y0 ZNF446-208ENST00000622313 1884 ntTSL 1 (best) BASIC26.28■■□□□ 1.8
USHBP1Q8N6Y0 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
USHBP1Q8N6Y0 FOXD4L3-201ENST00000342833 2039 ntAPPRIS P1 BASIC26.28■■□□□ 1.8
USHBP1Q8N6Y0 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
USHBP1Q8N6Y0 ARMC10P1-201ENST00000313754 855 ntBASIC26.28■■□□□ 1.8
USHBP1Q8N6Y0 HBA1-201ENST00000320868 577 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
USHBP1Q8N6Y0 AC113347.1-201ENST00000413321 391 ntBASIC26.28■■□□□ 1.8
USHBP1Q8N6Y0 AC098829.1-201ENST00000502344 630 ntTSL 3 BASIC26.28■■□□□ 1.8
USHBP1Q8N6Y0 MLF2-210ENST00000542154 838 ntAPPRIS P1 TSL 5 BASIC26.28■■□□□ 1.8
USHBP1Q8N6Y0 GNB5-211ENST00000560116 918 ntTSL 1 (best) BASIC26.28■■□□□ 1.8
USHBP1Q8N6Y0 AL158152.2-201ENST00000602703 235 ntTSL 3 BASIC26.28■■□□□ 1.8
USHBP1Q8N6Y0 AC008735.6-201ENST00000635964 1292 ntAPPRIS P1 TSL 2 BASIC26.28■■□□□ 1.8
USHBP1Q8N6Y0 SAMD10-201ENST00000369886 2181 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
USHBP1Q8N6Y0 DMAP1-202ENST00000361745 1545 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
USHBP1Q8N6Y0 HSPB2-C11orf52-202ENST00000534100 1521 ntAPPRIS ALT2 TSL 2 BASIC26.28■■□□□ 1.8
USHBP1Q8N6Y0 C5orf17-202ENST00000512559 1984 ntTSL 2 BASIC26.27■■□□□ 1.8
USHBP1Q8N6Y0 STK11-205ENST00000586243 2777 ntAPPRIS ALT2 TSL 5 BASIC26.27■■□□□ 1.8
USHBP1Q8N6Y0 OXT-201ENST00000217386 513 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
USHBP1Q8N6Y0 TERF1P1-201ENST00000311003 1181 ntBASIC26.27■■□□□ 1.8
USHBP1Q8N6Y0 ST20-202ENST00000485386 529 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
USHBP1Q8N6Y0 AC015712.4-203ENST00000559673 630 ntTSL 3 BASIC26.27■■□□□ 1.8
USHBP1Q8N6Y0 AC002310.4-201ENST00000568114 377 ntAPPRIS P1 TSL 5 BASIC26.27■■□□□ 1.8
USHBP1Q8N6Y0 RBM42-202ENST00000586618 771 ntTSL 3 BASIC26.27■■□□□ 1.8
USHBP1Q8N6Y0 GIPR-202ENST00000304207 1432 ntTSL 1 (best) BASIC26.27■■□□□ 1.8
USHBP1Q8N6Y0 HEMK1-206ENST00000455834 1499 ntAPPRIS P1 TSL 5 BASIC26.27■■□□□ 1.8
USHBP1Q8N6Y0 AC018553.1-201ENST00000616682 1458 ntBASIC26.27■■□□□ 1.8
USHBP1Q8N6Y0 BSCL2-207ENST00000407022 1516 ntAPPRIS P3 TSL 1 (best) BASIC26.27■■□□□ 1.8
USHBP1Q8N6Y0 TFP1-202ENST00000475455 1573 ntBASIC26.27■■□□□ 1.8
USHBP1Q8N6Y0 MYBL1-204ENST00000522677 5192 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
USHBP1Q8N6Y0 NDUFAF6-203ENST00000396124 1798 ntAPPRIS P1 TSL 2 BASIC26.27■■□□□ 1.8
USHBP1Q8N6Y0 PODNL1-203ENST00000538371 1826 ntAPPRIS ALT2 TSL 2 BASIC26.27■■□□□ 1.8
USHBP1Q8N6Y0 RUFY3-203ENST00000417478 2143 ntTSL 1 (best) BASIC26.26■■□□□ 1.79
USHBP1Q8N6Y0 TTLL7-214ENST00000610996 2028 ntTSL 5 BASIC26.26■■□□□ 1.79
Retrieved 100 of 98,524 protein–RNA pairs in 24.4 ms