Protein–RNA interactions for Protein: Q4G0X9

CCDC40, Coiled-coil domain-containing protein 40, humanhuman

Predictions only

Length 1,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40Q4G0X9 ART5-202ENST00000397067 1154 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
CCDC40Q4G0X9 CDCA4P2-201ENST00000441182 718 ntBASIC21.87■■□□□ 1.09
CCDC40Q4G0X9 BRWD1-AS2-201ENST00000603064 1028 ntBASIC21.87■■□□□ 1.09
CCDC40Q4G0X9 HAUS4-202ENST00000342454 1474 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
CCDC40Q4G0X9 FN3K-201ENST00000300784 1434 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
CCDC40Q4G0X9 KRT8P20-201ENST00000423953 1409 ntBASIC21.87■■□□□ 1.09
CCDC40Q4G0X9 MYH14-208ENST00000598205 6137 ntAPPRIS P3 TSL 5 BASIC21.87■■□□□ 1.09
CCDC40Q4G0X9 AC011511.1-201ENST00000452032 1956 ntAPPRIS P1 TSL 2 BASIC21.87■■□□□ 1.09
CCDC40Q4G0X9 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
CCDC40Q4G0X9 NAPSA-201ENST00000253719 1548 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
CCDC40Q4G0X9 RNF32-208ENST00000432459 1893 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
CCDC40Q4G0X9 RALGPS1-204ENST00000373436 1667 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
CCDC40Q4G0X9 TSSK6-201ENST00000585580 1467 ntAPPRIS P1 BASIC21.86■■□□□ 1.09
CCDC40Q4G0X9 DCXR-201ENST00000306869 887 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
CCDC40Q4G0X9 UNC50-201ENST00000357765 1143 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
CCDC40Q4G0X9 HES2-205ENST00000487437 968 ntTSL 3 BASIC21.86■■□□□ 1.09
CCDC40Q4G0X9 ZNF263-205ENST00000574253 1139 ntTSL 2 BASIC21.86■■□□□ 1.09
CCDC40Q4G0X9 AC133552.2-202ENST00000575694 574 ntBASIC21.86■■□□□ 1.09
CCDC40Q4G0X9 POU5F1-209ENST00000638788 369 ntTSL 5 BASIC21.86■■□□□ 1.09
CCDC40Q4G0X9 AGAP3-202ENST00000397238 3225 ntAPPRIS P2 TSL 1 (best) BASIC21.86■■□□□ 1.09
CCDC40Q4G0X9 KRT16P6-202ENST00000425692 1426 ntBASIC21.86■■□□□ 1.09
CCDC40Q4G0X9 SMPD3-201ENST00000219334 5453 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
CCDC40Q4G0X9 NR1D2-201ENST00000312521 5258 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
CCDC40Q4G0X9 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC21.86■■□□□ 1.09
CCDC40Q4G0X9 NYX-202ENST00000378220 2297 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
CCDC40Q4G0X9 NEIL3-201ENST00000264596 2408 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
CCDC40Q4G0X9 C19orf25-202ENST00000436106 2403 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
CCDC40Q4G0X9 HSD11B1L-204ENST00000411793 1362 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
CCDC40Q4G0X9 RGMA-208ENST00000556658 1889 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
CCDC40Q4G0X9 AC125437.2-201ENST00000625180 2167 ntBASIC21.85■■□□□ 1.09
CCDC40Q4G0X9 CXXC5-201ENST00000302517 2658 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
CCDC40Q4G0X9 ARNTL2-204ENST00000395901 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC21.85■■□□□ 1.09
CCDC40Q4G0X9 TDRP-203ENST00000523656 2622 ntTSL 5 BASIC21.85■■□□□ 1.09
CCDC40Q4G0X9 OGG1-217ENST00000449570 1948 ntTSL 5 BASIC21.85■■□□□ 1.09
CCDC40Q4G0X9 CCT5-205ENST00000506600 1939 ntTSL 2 BASIC21.85■■□□□ 1.09
CCDC40Q4G0X9 MIR663A-201ENST00000385250 93 ntBASIC21.85■■□□□ 1.09
CCDC40Q4G0X9 CLDN3-201ENST00000395145 1274 ntAPPRIS P1 BASIC21.85■■□□□ 1.09
CCDC40Q4G0X9 LSM12P1-201ENST00000411836 588 ntBASIC21.85■■□□□ 1.09
CCDC40Q4G0X9 AC026185.1-201ENST00000445748 174 ntBASIC21.85■■□□□ 1.09
CCDC40Q4G0X9 AC080023.1-201ENST00000526906 803 ntTSL 2 BASIC21.85■■□□□ 1.09
CCDC40Q4G0X9 PHB2-213ENST00000546111 858 ntTSL 2 BASIC21.85■■□□□ 1.09
CCDC40Q4G0X9 BEAN1-AS1-201ENST00000564618 533 ntTSL 4 BASIC21.85■■□□□ 1.09
CCDC40Q4G0X9 C2orf69P4-201ENST00000565394 541 ntBASIC21.85■■□□□ 1.09
CCDC40Q4G0X9 AC105036.2-201ENST00000569468 176 ntBASIC21.85■■□□□ 1.09
CCDC40Q4G0X9 ANAPC11-208ENST00000572851 686 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
CCDC40Q4G0X9 LINC02091-201ENST00000576171 1185 ntTSL 5 BASIC21.85■■□□□ 1.09
CCDC40Q4G0X9 AL161421.1-201ENST00000619666 1101 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
CCDC40Q4G0X9 CACNA1A-246ENST00000637736 8340 ntAPPRIS ALT2 TSL 5 BASIC21.85■■□□□ 1.09
CCDC40Q4G0X9 C3orf18-203ENST00000426034 2486 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
CCDC40Q4G0X9 FOXC1-201ENST00000380874 3926 ntAPPRIS P1 BASIC21.85■■□□□ 1.09
CCDC40Q4G0X9 PAN3-201ENST00000380958 2833 ntAPPRIS P2 TSL 5 BASIC21.84■■□□□ 1.09
CCDC40Q4G0X9 KLHL11-201ENST00000319121 2383 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
CCDC40Q4G0X9 RGS11-204ENST00000397770 2390 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
CCDC40Q4G0X9 MFSD10-211ENST00000514800 1776 ntTSL 5 BASIC21.84■■□□□ 1.09
CCDC40Q4G0X9 EYA2-210ENST00000611592 2612 ntTSL 5 BASIC21.84■■□□□ 1.09
CCDC40Q4G0X9 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC21.84■■□□□ 1.09
CCDC40Q4G0X9 IGFBP3-210ENST00000613132 2412 ntTSL 5 BASIC21.84■■□□□ 1.09
CCDC40Q4G0X9 IGFALS-201ENST00000215539 2116 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
CCDC40Q4G0X9 UBE2C-203ENST00000352551 665 ntTSL 2 BASIC21.84■■□□□ 1.09
CCDC40Q4G0X9 SLC22A15-201ENST00000369502 1230 ntTSL 2 BASIC21.84■■□□□ 1.09
CCDC40Q4G0X9 ARL5A-202ENST00000428992 747 ntTSL 2 BASIC21.84■■□□□ 1.09
CCDC40Q4G0X9 ABHD14A-202ENST00000458031 1113 ntTSL 5 BASIC21.84■■□□□ 1.09
CCDC40Q4G0X9 DLX3-202ENST00000512495 834 ntTSL 2 BASIC21.84■■□□□ 1.09
CCDC40Q4G0X9 FBXL8-203ENST00000518148 1054 ntTSL 2 BASIC21.84■■□□□ 1.09
CCDC40Q4G0X9 ZFPL1-203ENST00000525509 478 ntTSL 2 BASIC21.84■■□□□ 1.09
CCDC40Q4G0X9 VPS53-216ENST00000574029 585 ntTSL 4 BASIC21.84■■□□□ 1.09
CCDC40Q4G0X9 AL050303.2-201ENST00000619798 666 ntBASIC21.84■■□□□ 1.09
CCDC40Q4G0X9 GABRD-201ENST00000378585 1961 ntAPPRIS P2 TSL 1 (best) BASIC21.84■■□□□ 1.09
CCDC40Q4G0X9 TMEM109-202ENST00000536171 1959 ntAPPRIS P1 TSL 2 BASIC21.84■■□□□ 1.09
CCDC40Q4G0X9 SSR1-204ENST00000474597 1808 ntTSL 5 BASIC21.84■■□□□ 1.09
CCDC40Q4G0X9 EML2-220ENST00000589876 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC21.84■■□□□ 1.09
CCDC40Q4G0X9 SMYD2-201ENST00000366957 1671 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
CCDC40Q4G0X9 POU3F2-201ENST00000328345 4879 ntAPPRIS P1 BASIC21.84■■□□□ 1.09
CCDC40Q4G0X9 SYT5-202ENST00000537500 2612 ntAPPRIS P1 TSL 2 BASIC21.84■■□□□ 1.09
CCDC40Q4G0X9 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
CCDC40Q4G0X9 UBE2N-201ENST00000318066 5186 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
CCDC40Q4G0X9 GOLGA2P11-201ENST00000562660 1621 ntBASIC21.84■■□□□ 1.09
CCDC40Q4G0X9 ESX1-201ENST00000372588 1495 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
CCDC40Q4G0X9 MRM1-204ENST00000614766 1857 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
CCDC40Q4G0X9 MYO15B-232ENST00000610510 9195 ntAPPRIS P1 TSL 5 BASIC21.83■■□□□ 1.09
CCDC40Q4G0X9 RNH1-206ENST00000438658 1725 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
CCDC40Q4G0X9 KIAA1456-201ENST00000400069 1982 ntTSL 2 BASIC21.83■■□□□ 1.09
CCDC40Q4G0X9 ACY1-215ENST00000636358 1684 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
CCDC40Q4G0X9 FBXL19-207ENST00000565690 2570 ntAPPRIS ALT2 TSL 5 BASIC21.83■■□□□ 1.09
CCDC40Q4G0X9 KDM5C-203ENST00000375383 5122 ntAPPRIS ALT2 TSL 5 BASIC21.83■■□□□ 1.09
CCDC40Q4G0X9 FAM72A-203ENST00000367129 676 ntTSL 3 BASIC21.83■■□□□ 1.09
CCDC40Q4G0X9 HLA-G-202ENST00000376815 851 ntBASIC21.83■■□□□ 1.09
CCDC40Q4G0X9 HLA-G-203ENST00000376818 1127 ntBASIC21.83■■□□□ 1.09
CCDC40Q4G0X9 FAM72A-205ENST00000468509 629 ntTSL 5 BASIC21.83■■□□□ 1.09
CCDC40Q4G0X9 AF201337.1-201ENST00000520239 748 ntBASIC21.83■■□□□ 1.09
CCDC40Q4G0X9 ANAPC11-212ENST00000577425 603 ntTSL 3 BASIC21.83■■□□□ 1.09
CCDC40Q4G0X9 AC000035.1-201ENST00000634116 343 ntTSL 5 BASIC21.83■■□□□ 1.09
CCDC40Q4G0X9 MKRN4P-201ENST00000444706 1521 ntBASIC21.83■■□□□ 1.09
CCDC40Q4G0X9 ASMTL-206ENST00000534940 2048 ntTSL 2 BASIC21.83■■□□□ 1.09
CCDC40Q4G0X9 GLB1-201ENST00000307363 2616 ntAPPRIS P4 TSL 1 (best) BASIC21.83■■□□□ 1.08
CCDC40Q4G0X9 TREX2-206ENST00000370232 1864 ntTSL 1 (best) BASIC21.83■■□□□ 1.08
CCDC40Q4G0X9 IRGQ-205ENST00000602269 2210 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
CCDC40Q4G0X9 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC21.83■■□□□ 1.08
CCDC40Q4G0X9 GFER-201ENST00000248114 2345 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
CCDC40Q4G0X9 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC21.83■■□□□ 1.08
Retrieved 100 of 98,524 protein–RNA pairs in 19 ms