Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 CCDC124-203ENST00000597436 1055 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
SCN4AP35499 IRF5-214ENST00000613821 595 ntTSL 5 BASIC23.73■■□□□ 1.39
SCN4AP35499 OCIAD2-210ENST00000620187 697 ntTSL 3 BASIC23.73■■□□□ 1.39
SCN4AP35499 NDEL1-201ENST00000334527 2372 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
SCN4AP35499 CYP2D6-201ENST00000359033 1433 ntTSL 1 (best) BASIC23.72■■□□□ 1.39
SCN4AP35499 HLA-G-201ENST00000360323 1427 ntAPPRIS P2 BASIC23.72■■□□□ 1.39
SCN4AP35499 SLC35A2-217ENST00000635589 1424 ntTSL 2 BASIC23.72■■□□□ 1.39
SCN4AP35499 DNAJC28-201ENST00000314399 1625 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
SCN4AP35499 S100A16-203ENST00000368705 956 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
SCN4AP35499 AC004951.3-201ENST00000418645 1148 ntBASIC23.72■■□□□ 1.39
SCN4AP35499 AC008738.3-201ENST00000589932 659 ntTSL 2 BASIC23.72■■□□□ 1.39
SCN4AP35499 RASD1-201ENST00000225688 1746 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
SCN4AP35499 ATP8A1-207ENST00000510289 2238 ntTSL 1 (best) BASIC23.72■■□□□ 1.39
SCN4AP35499 KRT8P10-201ENST00000450021 1447 ntBASIC23.72■■□□□ 1.39
SCN4AP35499 PTGER3-209ENST00000460330 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC23.72■■□□□ 1.39
SCN4AP35499 STARD4-203ENST00000502322 1467 ntTSL 1 (best) BASIC23.72■■□□□ 1.39
SCN4AP35499 NOL3-204ENST00000564053 1592 ntAPPRIS ALT2 TSL 2 BASIC23.71■■□□□ 1.39
SCN4AP35499 CXCR3-202ENST00000373693 1624 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
SCN4AP35499 PINK1-201ENST00000321556 2660 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
SCN4AP35499 CA7-202ENST00000394069 1713 ntTSL 1 (best) BASIC23.71■■□□□ 1.39
SCN4AP35499 C1orf50-201ENST00000372525 996 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
SCN4AP35499 MALL-203ENST00000427178 1070 ntTSL 1 (best) BASIC23.71■■□□□ 1.39
SCN4AP35499 NCF1B-202ENST00000432102 930 ntTSL 2 BASIC23.71■■□□□ 1.39
SCN4AP35499 AC112907.2-201ENST00000448639 330 ntBASIC23.71■■□□□ 1.39
SCN4AP35499 KRT18P16-201ENST00000510337 1294 ntBASIC23.71■■□□□ 1.39
SCN4AP35499 AL512604.3-201ENST00000569583 964 ntBASIC23.71■■□□□ 1.39
SCN4AP35499 ARRB2-201ENST00000269260 1895 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
SCN4AP35499 BACE1-209ENST00000513780 1465 ntTSL 1 (best) BASIC23.71■■□□□ 1.39
SCN4AP35499 FAM131C-201ENST00000375662 1695 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
SCN4AP35499 GOLGA2P6-201ENST00000340929 2049 ntBASIC23.71■■□□□ 1.39
SCN4AP35499 TRPT1-203ENST00000394547 865 ntTSL 1 (best) BASIC23.7■■□□□ 1.39
SCN4AP35499 ACP6-203ENST00000487562 1258 ntTSL 5 BASIC23.7■■□□□ 1.39
SCN4AP35499 YIPF2-209ENST00000590329 958 ntTSL 5 BASIC23.7■■□□□ 1.39
SCN4AP35499 AL158151.3-201ENST00000599172 696 ntTSL 5 BASIC23.7■■□□□ 1.39
SCN4AP35499 C10orf142-201ENST00000619243 1110 ntAPPRIS P2 TSL 2 BASIC23.7■■□□□ 1.39
SCN4AP35499 AL023973.1-201ENST00000624619 620 ntBASIC23.7■■□□□ 1.39
SCN4AP35499 HAGHL-203ENST00000389703 1347 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.39
SCN4AP35499 AFDN-AS1-201ENST00000359760 2238 ntTSL 1 (best) BASIC23.7■■□□□ 1.39
SCN4AP35499 ZIC4-209ENST00000473123 1481 ntAPPRIS P1 TSL 2 BASIC23.7■■□□□ 1.39
SCN4AP35499 GALNT16-204ENST00000553669 1629 ntTSL 1 (best) BASIC23.7■■□□□ 1.38
SCN4AP35499 SMC5-AS1-201ENST00000594708 1818 ntTSL 2 BASIC23.7■■□□□ 1.38
SCN4AP35499 ARRDC1-AS1-203ENST00000623970 2210 ntTSL 5 BASIC23.7■■□□□ 1.38
SCN4AP35499 IRX4-207ENST00000613726 2403 ntTSL 1 (best) BASIC23.7■■□□□ 1.38
SCN4AP35499 SMYD3-204ENST00000403792 1209 ntTSL 1 (best) BASIC23.7■■□□□ 1.38
SCN4AP35499 PVRIG2P-201ENST00000435460 978 ntBASIC23.7■■□□□ 1.38
SCN4AP35499 TMEM218-206ENST00000527766 812 ntAPPRIS P1 TSL 3 BASIC23.7■■□□□ 1.38
SCN4AP35499 ELAC2-212ENST00000578071 579 ntTSL 4 BASIC23.7■■□□□ 1.38
SCN4AP35499 GPR162-203ENST00000428545 1610 ntTSL 1 (best) BASIC23.7■■□□□ 1.38
SCN4AP35499 RNH1-203ENST00000397604 1722 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
SCN4AP35499 LHX8-202ENST00000356261 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC23.7■■□□□ 1.38
SCN4AP35499 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC23.7■■□□□ 1.38
SCN4AP35499 ST3GAL5-202ENST00000377332 2165 ntTSL 5 BASIC23.7■■□□□ 1.38
SCN4AP35499 BCKDK-201ENST00000219794 2128 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
SCN4AP35499 PTH1R-201ENST00000313049 2123 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
SCN4AP35499 MXRA8-203ENST00000445648 2001 ntTSL 2 BASIC23.69■■□□□ 1.38
SCN4AP35499 LMAN1L-201ENST00000309664 1873 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
SCN4AP35499 TBC1D10C-201ENST00000312390 1497 ntTSL 5 BASIC23.69■■□□□ 1.38
SCN4AP35499 FEZF1-202ENST00000427185 1368 ntTSL 1 (best) BASIC23.69■■□□□ 1.38
SCN4AP35499 AP2S1-202ENST00000352203 793 ntTSL 2 BASIC23.69■■□□□ 1.38
SCN4AP35499 ATP5G2P1-201ENST00000433580 426 ntBASIC23.69■■□□□ 1.38
SCN4AP35499 RNF144A-AS1-204ENST00000437589 618 ntTSL 2 BASIC23.69■■□□□ 1.38
SCN4AP35499 AC005091.1-201ENST00000441955 1190 ntTSL 3 BASIC23.69■■□□□ 1.38
SCN4AP35499 KRT18P38-201ENST00000449496 1282 ntBASIC23.69■■□□□ 1.38
SCN4AP35499 AC002467.1-201ENST00000457510 657 ntTSL 3 BASIC23.69■■□□□ 1.38
SCN4AP35499 AC104596.1-202ENST00000507486 759 ntTSL 3 BASIC23.69■■□□□ 1.38
SCN4AP35499 VENTXP5-201ENST00000523979 775 ntBASIC23.69■■□□□ 1.38
SCN4AP35499 AP2S1-204ENST00000597020 707 ntTSL 1 (best) BASIC23.69■■□□□ 1.38
SCN4AP35499 POLR1D-203ENST00000399697 2036 ntTSL 1 (best) BASIC23.69■■□□□ 1.38
SCN4AP35499 PCDHB12-203ENST00000624949 1963 ntTSL 2 BASIC23.69■■□□□ 1.38
SCN4AP35499 PKIB-206ENST00000392490 1811 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
SCN4AP35499 CPNE9-205ENST00000613455 1742 ntTSL 5 BASIC23.69■■□□□ 1.38
SCN4AP35499 GPRIN2-201ENST00000374314 1696 ntAPPRIS P1 BASIC23.69■■□□□ 1.38
SCN4AP35499 EMD-202ENST00000369842 1379 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
SCN4AP35499 NDUFA10-202ENST00000307300 1313 ntTSL 1 (best) BASIC23.68■■□□□ 1.38
SCN4AP35499 ZNF584-203ENST00000593920 2187 ntTSL 2 BASIC23.68■■□□□ 1.38
SCN4AP35499 CENPA-201ENST00000233505 1299 ntTSL 1 (best) BASIC23.68■■□□□ 1.38
SCN4AP35499 PSMA7-203ENST00000370873 996 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
SCN4AP35499 PTPA-216ENST00000432651 857 ntTSL 2 BASIC23.68■■□□□ 1.38
SCN4AP35499 FDX1P1-201ENST00000449115 551 ntBASIC23.68■■□□□ 1.38
SCN4AP35499 AC127526.4-201ENST00000527970 983 ntTSL 3 BASIC23.68■■□□□ 1.38
SCN4AP35499 ZNF667-AS1-208ENST00000594783 475 ntTSL 3 BASIC23.68■■□□□ 1.38
SCN4AP35499 CDK2AP1-207ENST00000618072 1144 ntTSL 3 BASIC23.68■■□□□ 1.38
SCN4AP35499 CERS1-202ENST00000542296 1947 ntTSL 1 (best) BASIC23.68■■□□□ 1.38
SCN4AP35499 PAX1-202ENST00000444366 1850 ntAPPRIS ALT2 TSL 2 BASIC23.68■■□□□ 1.38
SCN4AP35499 AC092338.2-201ENST00000568827 1415 ntBASIC23.68■■□□□ 1.38
SCN4AP35499 CCNL1-203ENST00000461804 1998 ntTSL 2 BASIC23.68■■□□□ 1.38
SCN4AP35499 CD1E-210ENST00000368165 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC23.68■■□□□ 1.38
SCN4AP35499 AANAT-202ENST00000392492 1005 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
SCN4AP35499 CD1E-214ENST00000452291 745 ntTSL 1 (best) BASIC23.68■■□□□ 1.38
SCN4AP35499 AL162258.2-202ENST00000469931 831 ntTSL 5 BASIC23.68■■□□□ 1.38
SCN4AP35499 PTK2-216ENST00000519881 863 ntTSL 3 BASIC23.68■■□□□ 1.38
SCN4AP35499 ZNF444P1-201ENST00000559497 298 ntBASIC23.68■■□□□ 1.38
SCN4AP35499 CENPS-CORT-205ENST00000602787 571 ntAPPRIS P1 TSL 3 BASIC23.68■■□□□ 1.38
SCN4AP35499 AC009542.2-201ENST00000637483 1189 ntTSL 5 BASIC23.68■■□□□ 1.38
SCN4AP35499 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC23.67■■□□□ 1.38
SCN4AP35499 NPIPA8-201ENST00000525596 1565 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
SCN4AP35499 H2AFY2-201ENST00000373255 1980 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
SCN4AP35499 HSPB2-C11orf52-202ENST00000534100 1521 ntAPPRIS ALT2 TSL 2 BASIC23.67■■□□□ 1.38
SCN4AP35499 ATP5G2-201ENST00000338662 1792 ntTSL 2 BASIC23.67■■□□□ 1.38
SCN4AP35499 TSEN15-203ENST00000423085 1743 ntTSL 2 BASIC23.67■■□□□ 1.38
Retrieved 100 of 98,524 protein–RNA pairs in 24.2 ms