Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 RUSC1-AS1-203ENST00000450199 1636 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
PTPN4P29074 KCNQ5-207ENST00000403813 6539 ntAPPRIS ALT2 TSL 5 BASIC19.91■□□□□ 0.78
PTPN4P29074 GNAI1-201ENST00000351004 3347 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
PTPN4P29074 PLSCR3-201ENST00000324822 1689 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
PTPN4P29074 MLX-201ENST00000246912 2586 ntAPPRIS P3 TSL 1 (best) BASIC19.9■□□□□ 0.78
PTPN4P29074 RIMBP3-201ENST00000619918 6105 ntAPPRIS P1 BASIC19.9■□□□□ 0.78
PTPN4P29074 ITPKB-203ENST00000429204 6162 ntAPPRIS P1 TSL 5 BASIC19.9■□□□□ 0.78
PTPN4P29074 TM7SF3-201ENST00000343028 2709 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
PTPN4P29074 AC129492.1-201ENST00000399413 1804 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
PTPN4P29074 B4GALT2-204ENST00000434555 1923 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
PTPN4P29074 B4GALNT1-208ENST00000550764 1967 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
PTPN4P29074 ARFRP1-208ENST00000612256 2974 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
PTPN4P29074 CAPZB-202ENST00000264203 2068 ntTSL 2 BASIC19.9■□□□□ 0.78
PTPN4P29074 CASP16P-202ENST00000575497 2161 ntTSL 2 BASIC19.9■□□□□ 0.78
PTPN4P29074 LETM1P2-201ENST00000597330 2178 ntBASIC19.9■□□□□ 0.78
PTPN4P29074 PGS1-201ENST00000262764 2201 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
PTPN4P29074 FAM160A2-201ENST00000265978 3481 ntAPPRIS P3 TSL 1 (best) BASIC19.9■□□□□ 0.78
PTPN4P29074 COBL-202ENST00000395540 2332 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
PTPN4P29074 PRKAG2-203ENST00000418337 2318 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
PTPN4P29074 SEMA7A-203ENST00000543145 2304 ntTSL 2 BASIC19.9■□□□□ 0.78
PTPN4P29074 TMEM179-201ENST00000341595 2513 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
PTPN4P29074 XXYLT1-202ENST00000356740 564 ntTSL 2 BASIC19.9■□□□□ 0.78
PTPN4P29074 BET1L-204ENST00000410108 637 ntTSL 3 BASIC19.9■□□□□ 0.78
PTPN4P29074 UQCRFS1P1-201ENST00000435169 820 ntBASIC19.9■□□□□ 0.78
PTPN4P29074 KLF13-207ENST00000560473 489 ntTSL 3 BASIC19.9■□□□□ 0.78
PTPN4P29074 DCTPP1-205ENST00000568973 878 ntTSL 2 BASIC19.9■□□□□ 0.78
PTPN4P29074 AC008175.2-201ENST00000612840 297 ntBASIC19.9■□□□□ 0.78
PTPN4P29074 AC133041.1-202ENST00000642053 222 ntBASIC19.9■□□□□ 0.78
PTPN4P29074 SKOR2-202ENST00000425639 3899 ntAPPRIS ALT2 TSL 5 BASIC19.9■□□□□ 0.78
PTPN4P29074 TUSC3-203ENST00000503731 1498 ntAPPRIS P4 TSL 1 (best) BASIC19.9■□□□□ 0.78
PTPN4P29074 ZNF839-202ENST00000442396 2987 ntAPPRIS P3 TSL 5 BASIC19.9■□□□□ 0.78
PTPN4P29074 CCDC74A-201ENST00000295171 1543 ntAPPRIS P3 TSL 1 (best) BASIC19.9■□□□□ 0.78
PTPN4P29074 CCDC74B-201ENST00000310463 1549 ntAPPRIS P3 TSL 2 BASIC19.9■□□□□ 0.78
PTPN4P29074 YBX1-201ENST00000321358 1514 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
PTPN4P29074 ZNF385B-204ENST00000410066 3288 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
PTPN4P29074 PTGER3-212ENST00000628037 1815 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
PTPN4P29074 CTBP2-205ENST00000411419 2036 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
PTPN4P29074 LBX2-AS1-202ENST00000603175 2083 ntBASIC19.9■□□□□ 0.78
PTPN4P29074 AKAP8L-201ENST00000397410 2146 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
PTPN4P29074 MED25-201ENST00000312865 2332 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
PTPN4P29074 ORAI2-204ENST00000473939 2493 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
PTPN4P29074 FXR2-201ENST00000250113 2957 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.78
PTPN4P29074 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC19.89■□□□□ 0.78
PTPN4P29074 AHCYL1-203ENST00000393614 4313 ntTSL 2 BASIC19.89■□□□□ 0.78
PTPN4P29074 ROCK2-202ENST00000315872 8292 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
PTPN4P29074 SBK2-201ENST00000344158 1056 ntAPPRIS P1 TSL 2 BASIC19.89■□□□□ 0.77
PTPN4P29074 MGST3-205ENST00000367889 1015 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
PTPN4P29074 TPD52L1-203ENST00000368402 1308 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
PTPN4P29074 CDCA7L-203ENST00000406877 3066 ntAPPRIS P3 TSL 1 (best) BASIC19.89■□□□□ 0.77
PTPN4P29074 SBK2-202ENST00000413299 1085 ntAPPRIS P1 TSL 5 BASIC19.89■□□□□ 0.77
PTPN4P29074 RUFY3-203ENST00000417478 2143 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
PTPN4P29074 AC069152.1-201ENST00000438030 544 ntBASIC19.89■□□□□ 0.77
PTPN4P29074 SGO1-209ENST00000442720 2266 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.77
PTPN4P29074 WWTR1-AS1-203ENST00000495094 975 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
PTPN4P29074 AC007322.4-201ENST00000509611 723 ntBASIC19.89■□□□□ 0.77
PTPN4P29074 AC008443.6-201ENST00000512508 500 ntTSL 4 BASIC19.89■□□□□ 0.77
PTPN4P29074 C17orf58-204ENST00000580729 2065 ntTSL 5 BASIC19.89■□□□□ 0.77
PTPN4P29074 TMEM191A-211ENST00000637163 1067 ntBASIC19.89■□□□□ 0.77
PTPN4P29074 TAF5L-201ENST00000258281 3112 ntAPPRIS P1 TSL 5 BASIC19.89■□□□□ 0.77
PTPN4P29074 CDK13-202ENST00000340829 5066 ntAPPRIS ALT1 TSL 1 (best) BASIC19.89■□□□□ 0.77
PTPN4P29074 BZW1-202ENST00000409226 2455 ntTSL 2 BASIC19.88■□□□□ 0.77
PTPN4P29074 ISYNA1-201ENST00000338128 2420 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
PTPN4P29074 PRSS36-202ENST00000418068 2446 ntTSL 2 BASIC19.88■□□□□ 0.77
PTPN4P29074 AMDHD1-201ENST00000266736 2260 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
PTPN4P29074 NCLN-205ENST00000590671 2070 ntTSL 2 BASIC19.88■□□□□ 0.77
PTPN4P29074 TTLL7-214ENST00000610996 2028 ntTSL 5 BASIC19.88■□□□□ 0.77
PTPN4P29074 DHRS2-202ENST00000344777 1678 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
PTPN4P29074 AC092720.2-201ENST00000602388 1665 ntBASIC19.88■□□□□ 0.77
PTPN4P29074 PRSS12-201ENST00000296498 4809 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
PTPN4P29074 AC020922.1-201ENST00000591954 3058 ntAPPRIS P1 TSL 5 BASIC19.88■□□□□ 0.77
PTPN4P29074 TTC19-201ENST00000261647 3002 ntAPPRIS P2 TSL 1 (best) BASIC19.88■□□□□ 0.77
PTPN4P29074 AC068338.2-201ENST00000563278 1430 ntBASIC19.88■□□□□ 0.77
PTPN4P29074 RWDD4-206ENST00000512740 1393 ntTSL 5 BASIC19.88■□□□□ 0.77
PTPN4P29074 TBXA2R-201ENST00000375190 2608 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
PTPN4P29074 MTHFS-201ENST00000258874 907 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
PTPN4P29074 FNDC11-201ENST00000370097 1119 ntAPPRIS P1 TSL 2 BASIC19.88■□□□□ 0.77
PTPN4P29074 CT47A12-201ENST00000419982 1165 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
PTPN4P29074 AC073210.2-201ENST00000430369 194 ntBASIC19.88■□□□□ 0.77
PTPN4P29074 RNF146-206ENST00000480444 843 ntTSL 2 BASIC19.88■□□□□ 0.77
PTPN4P29074 AC021660.2-201ENST00000502999 388 ntTSL 3 BASIC19.88■□□□□ 0.77
PTPN4P29074 MYO19-221ENST00000620640 1186 ntTSL 2 BASIC19.88■□□□□ 0.77
PTPN4P29074 NHLH2-201ENST00000320238 2512 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
PTPN4P29074 LINC00315-201ENST00000441947 2323 ntTSL 5 BASIC19.88■□□□□ 0.77
PTPN4P29074 CPAMD8-202ENST00000388925 5355 ntTSL 5 BASIC19.88■□□□□ 0.77
PTPN4P29074 DNAJC1-202ENST00000376980 2106 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
PTPN4P29074 DCAF4-201ENST00000353777 1940 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
PTPN4P29074 KLHL31-202ENST00000407079 1905 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
PTPN4P29074 ENTPD6-202ENST00000360031 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
PTPN4P29074 TMEM218-213ENST00000531909 1828 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
PTPN4P29074 CPNE9-202ENST00000383831 1751 ntTSL 5 BASIC19.88■□□□□ 0.77
PTPN4P29074 PGR-201ENST00000263463 2496 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
PTPN4P29074 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
PTPN4P29074 FBXL20-202ENST00000394294 2309 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
PTPN4P29074 DALRD3-205ENST00000440857 2014 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
PTPN4P29074 BST1-202ENST00000382346 1993 ntAPPRIS ALT2 TSL 5 BASIC19.87■□□□□ 0.77
PTPN4P29074 GJB6-204ENST00000400066 1927 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
PTPN4P29074 BHLHA15-201ENST00000314018 706 ntAPPRIS P1 BASIC19.87■□□□□ 0.77
PTPN4P29074 ZNF644-203ENST00000361321 1253 ntTSL 2 BASIC19.87■□□□□ 0.77
PTPN4P29074 POU5F1P4-201ENST00000413175 1085 ntBASIC19.87■□□□□ 0.77
PTPN4P29074 CYP2T1P-201ENST00000432607 1285 ntBASIC19.87■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 25.2 ms