Protein–RNA interactions for Protein: P22223

CDH3, Cadherin-3, humanhuman

Predictions only

Length 829 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3P22223 SLC1A7-201ENST00000371491 1306 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
CDH3P22223 POMGNT2-202ENST00000441964 2531 ntAPPRIS P1 TSL 4 BASIC19.44■□□□□ 0.7
CDH3P22223 DOC2A-201ENST00000350119 2071 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CDH3P22223 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CDH3P22223 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CDH3P22223 LRCH4-201ENST00000310300 2552 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CDH3P22223 SORCS2-203ENST00000507866 6152 ntAPPRIS P2 TSL 1 (best) BASIC19.43■□□□□ 0.7
CDH3P22223 PDLIM3-212ENST00000620787 2352 ntTSL 4 BASIC19.43■□□□□ 0.7
CDH3P22223 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
CDH3P22223 AC087289.5-201ENST00000586076 3175 ntBASIC19.43■□□□□ 0.7
CDH3P22223 DALRD3-202ENST00000341949 1739 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CDH3P22223 UGDH-206ENST00000507089 1712 ntTSL 2 BASIC19.43■□□□□ 0.7
CDH3P22223 CRLF3-201ENST00000324238 2957 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CDH3P22223 MOK-233ENST00000524214 1539 ntTSL 2 BASIC19.43■□□□□ 0.7
CDH3P22223 FBL-201ENST00000221801 1160 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CDH3P22223 WDR74-202ENST00000311713 1153 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
CDH3P22223 LRR1-202ENST00000318317 957 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
CDH3P22223 ZDHHC12-202ENST00000372667 1187 ntTSL 5 BASIC19.43■□□□□ 0.7
CDH3P22223 RNF5-203ENST00000375094 1168 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CDH3P22223 KRT17P3-201ENST00000420566 1262 ntBASIC19.43■□□□□ 0.7
CDH3P22223 GCC2-AS1-202ENST00000440975 574 ntTSL 4 BASIC19.43■□□□□ 0.7
CDH3P22223 SCARA5-203ENST00000518030 1074 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
CDH3P22223 AC073912.1-201ENST00000546264 587 ntTSL 3 BASIC19.43■□□□□ 0.7
CDH3P22223 EP300-201ENST00000263253 9587 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CDH3P22223 TMCO3-201ENST00000375391 2132 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
CDH3P22223 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC19.43■□□□□ 0.7
CDH3P22223 SH3BGRL3-201ENST00000270792 1661 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CDH3P22223 ASB18-201ENST00000409749 1401 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CDH3P22223 TPPP3-204ENST00000562206 1410 ntAPPRIS P1 TSL 2 BASIC19.42■□□□□ 0.7
CDH3P22223 ZFP69-202ENST00000372706 2871 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CDH3P22223 FOXD4L3-201ENST00000342833 2039 ntAPPRIS P1 BASIC19.42■□□□□ 0.7
CDH3P22223 SLC35A3-208ENST00000638336 2438 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
CDH3P22223 MORN1-202ENST00000378529 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
CDH3P22223 TMTC1-203ENST00000539277 2758 ntAPPRIS P2 TSL 1 (best) BASIC19.42■□□□□ 0.7
CDH3P22223 UBE2L6-202ENST00000340573 1573 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
CDH3P22223 PRORSD1P-201ENST00000295112 541 ntBASIC19.42■□□□□ 0.7
CDH3P22223 GGTLC1-203ENST00000335694 1046 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CDH3P22223 METTL21A-207ENST00000442521 1003 ntAPPRIS P1 TSL 2 BASIC19.42■□□□□ 0.7
CDH3P22223 PRORSD1P-203ENST00000579162 626 ntTSL 5 BASIC19.42■□□□□ 0.7
CDH3P22223 AC008687.6-201ENST00000596318 630 ntBASIC19.42■□□□□ 0.7
CDH3P22223 AC005225.2-202ENST00000617980 408 ntTSL 4 BASIC19.42■□□□□ 0.7
CDH3P22223 AC006557.6-201ENST00000623071 864 ntBASIC19.42■□□□□ 0.7
CDH3P22223 AC073648.6-201ENST00000641589 218 ntBASIC19.42■□□□□ 0.7
CDH3P22223 KIRREL2-202ENST00000347900 2015 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
CDH3P22223 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC19.42■□□□□ 0.7
CDH3P22223 BRSK1-201ENST00000309383 3079 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CDH3P22223 TNFRSF14-201ENST00000355716 1707 ntAPPRIS P2 TSL 1 (best) BASIC19.42■□□□□ 0.7
CDH3P22223 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CDH3P22223 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
CDH3P22223 TSSC4-207ENST00000451491 1423 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
CDH3P22223 INSR-201ENST00000302850 4721 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
CDH3P22223 HAUS4-202ENST00000342454 1474 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
CDH3P22223 GRINA-201ENST00000313269 1968 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
CDH3P22223 CRHR1-214ENST00000619154 2370 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
CDH3P22223 ENPP7-201ENST00000328313 2043 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CDH3P22223 HCG18-235ENST00000426882 4862 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
CDH3P22223 LTBP3-217ENST00000530785 2461 ntTSL 2 BASIC19.41■□□□□ 0.7
CDH3P22223 OSCAR-208ENST00000611261 2061 ntAPPRIS P4 TSL 5 BASIC19.41■□□□□ 0.7
CDH3P22223 OLFM1-202ENST00000277415 1014 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
CDH3P22223 FAM167B-201ENST00000373582 936 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CDH3P22223 AC007405.3-201ENST00000429172 561 ntTSL 3 BASIC19.41■□□□□ 0.7
CDH3P22223 MAGI2-AS3-211ENST00000451809 707 ntTSL 3 BASIC19.41■□□□□ 0.7
CDH3P22223 LINC01881-205ENST00000456398 1235 ntTSL 5 BASIC19.41■□□□□ 0.7
CDH3P22223 CHEK2P2-202ENST00000555186 864 ntTSL 2 BASIC19.41■□□□□ 0.7
CDH3P22223 AC022167.3-201ENST00000564485 427 ntTSL 2 BASIC19.41■□□□□ 0.7
CDH3P22223 AC005829.2-201ENST00000571422 1056 ntBASIC19.41■□□□□ 0.7
CDH3P22223 EYA2-210ENST00000611592 2612 ntTSL 5 BASIC19.41■□□□□ 0.7
CDH3P22223 WIPF1-205ENST00000409415 1772 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
CDH3P22223 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC19.41■□□□□ 0.7
CDH3P22223 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
CDH3P22223 TSPAN14-203ENST00000372156 1380 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
CDH3P22223 B3GNT2-201ENST00000301998 2763 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CDH3P22223 NFS1-214ENST00000541387 1436 ntTSL 2 BASIC19.41■□□□□ 0.7
CDH3P22223 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC19.41■□□□□ 0.7
CDH3P22223 JAKMIP1-203ENST00000409371 2420 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
CDH3P22223 TACO1-201ENST00000258975 1469 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CDH3P22223 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC19.4■□□□□ 0.7
CDH3P22223 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
CDH3P22223 ADRA1A-203ENST00000380572 1697 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
CDH3P22223 MATK-215ENST00000619596 1740 ntAPPRIS P4 TSL 2 BASIC19.4■□□□□ 0.7
CDH3P22223 LMO4-202ENST00000370544 5405 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
CDH3P22223 KCNQ5-201ENST00000342056 6688 ntAPPRIS ALT1 TSL 5 BASIC19.4■□□□□ 0.7
CDH3P22223 C6orf48-205ENST00000375640 1053 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
CDH3P22223 RER1-204ENST00000378518 522 ntTSL 3 BASIC19.4■□□□□ 0.7
CDH3P22223 ZNF467-202ENST00000484747 913 ntTSL 2 BASIC19.4■□□□□ 0.7
CDH3P22223 COX4I1-202ENST00000561569 716 ntAPPRIS P1 TSL 2 BASIC19.4■□□□□ 0.7
CDH3P22223 SUN1-220ENST00000457378 1309 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
CDH3P22223 XYLT1-201ENST00000261381 9891 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
CDH3P22223 NYX-202ENST00000378220 2297 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
CDH3P22223 LIN54-209ENST00000510557 2257 ntTSL 2 BASIC19.4■□□□□ 0.7
CDH3P22223 UGP2-201ENST00000337130 2338 ntAPPRIS P2 TSL 1 (best) BASIC19.4■□□□□ 0.7
CDH3P22223 AC110285.2-201ENST00000571724 1565 ntTSL 2 BASIC19.4■□□□□ 0.7
CDH3P22223 MAEA-213ENST00000510794 1607 ntTSL 2 BASIC19.4■□□□□ 0.7
CDH3P22223 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC19.39■□□□□ 0.7
CDH3P22223 KCNK17-202ENST00000453413 1706 ntAPPRIS ALT2 TSL 5 BASIC19.39■□□□□ 0.7
CDH3P22223 RNH1-202ENST00000356187 1791 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
CDH3P22223 RNF8-204ENST00000469731 1800 ntTSL 5 BASIC19.39■□□□□ 0.7
CDH3P22223 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC19.39■□□□□ 0.7
CDH3P22223 MARK2-208ENST00000508192 2924 ntAPPRIS P3 TSL 5 BASIC19.39■□□□□ 0.7
CDH3P22223 KIRREL2-201ENST00000262625 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 38.8 ms