Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 AF106564.1-201ENST00000607058 2553 ntBASIC19.2■□□□□ 0.66
COL5A1P20908 SEC61A2-205ENST00000379033 2462 ntTSL 2 BASIC19.2■□□□□ 0.66
COL5A1P20908 SLC1A6-202ENST00000430939 1794 ntTSL 2 BASIC19.2■□□□□ 0.66
COL5A1P20908 HOXD12-202ENST00000406506 1318 ntAPPRIS P1 TSL 3 BASIC19.2■□□□□ 0.66
COL5A1P20908 CACYBP-201ENST00000367679 2766 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
COL5A1P20908 EXOC3L2-201ENST00000252482 1230 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
COL5A1P20908 TSPY14P-201ENST00000303979 915 ntBASIC19.2■□□□□ 0.66
COL5A1P20908 TMEM223-201ENST00000307366 1288 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
COL5A1P20908 INSIG1-202ENST00000342407 1127 ntTSL 2 BASIC19.2■□□□□ 0.66
COL5A1P20908 C9orf129-201ENST00000375419 1154 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
COL5A1P20908 PHYHD1-207ENST00000421063 1182 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
COL5A1P20908 TSPY1-201ENST00000423647 1171 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
COL5A1P20908 AL050404.1-201ENST00000424566 802 ntTSL 2 BASIC19.2■□□□□ 0.66
COL5A1P20908 AC128688.1-201ENST00000487626 519 ntBASIC19.2■□□□□ 0.66
COL5A1P20908 ATP6V0E1-204ENST00000519911 718 ntTSL 2 BASIC19.2■□□□□ 0.66
COL5A1P20908 AMN1-211ENST00000541931 880 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
COL5A1P20908 CENPX-206ENST00000580435 710 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
COL5A1P20908 AL158152.2-201ENST00000602703 235 ntTSL 3 BASIC19.2■□□□□ 0.66
COL5A1P20908 GRAMD4P8-201ENST00000605465 1115 ntBASIC19.2■□□□□ 0.66
COL5A1P20908 RABEPK-204ENST00000394125 1466 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
COL5A1P20908 BABAM1-208ENST00000598188 1470 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
COL5A1P20908 FAM69B-202ENST00000371692 1668 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
COL5A1P20908 CHRDL2-203ENST00000376332 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
COL5A1P20908 DRAM2-201ENST00000286692 2246 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
COL5A1P20908 ZNF446-208ENST00000622313 1884 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
COL5A1P20908 CPEB1-218ENST00000620182 2422 ntTSL 2 BASIC19.19■□□□□ 0.66
COL5A1P20908 PODNL1-203ENST00000538371 1826 ntAPPRIS ALT2 TSL 2 BASIC19.19■□□□□ 0.66
COL5A1P20908 SYNE4-202ENST00000340477 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
COL5A1P20908 MCF2L-207ENST00000397024 490 ntTSL 5 BASIC19.19■□□□□ 0.66
COL5A1P20908 AC104076.2-201ENST00000448912 469 ntBASIC19.19■□□□□ 0.66
COL5A1P20908 ABHD11-207ENST00000458339 890 ntTSL 3 BASIC19.19■□□□□ 0.66
COL5A1P20908 CHAC1-203ENST00000487220 853 ntTSL 3 BASIC19.19■□□□□ 0.66
COL5A1P20908 AC010203.1-204ENST00000548782 407 ntBASIC19.19■□□□□ 0.66
COL5A1P20908 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC19.19■□□□□ 0.66
COL5A1P20908 SLC25A42-201ENST00000318596 3120 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
COL5A1P20908 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
COL5A1P20908 PTPN18-202ENST00000347849 2472 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
COL5A1P20908 C18orf8-214ENST00000615148 1958 ntTSL 5 BASIC19.19■□□□□ 0.66
COL5A1P20908 MYBL2-201ENST00000217026 2639 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
COL5A1P20908 ARMC6-201ENST00000269932 2412 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
COL5A1P20908 ZC3HAV1L-201ENST00000275766 1753 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
COL5A1P20908 H19-201ENST00000411754 1788 ntTSL 5 BASIC19.19■□□□□ 0.66
COL5A1P20908 KHDC1-201ENST00000257765 1134 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
COL5A1P20908 TMIGD2-201ENST00000301272 1262 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
COL5A1P20908 TMEM234-201ENST00000309777 1082 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
COL5A1P20908 AC073343.2-203ENST00000366167 564 ntTSL 4 BASIC19.18■□□□□ 0.66
COL5A1P20908 DNTTIP1-201ENST00000372622 1290 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
COL5A1P20908 C6orf48-206ENST00000375641 602 ntAPPRIS P1 TSL 2 BASIC19.18■□□□□ 0.66
COL5A1P20908 ST8SIA1-202ENST00000381424 1036 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
COL5A1P20908 MIEN1-201ENST00000394231 1006 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
COL5A1P20908 BX890604.1-205ENST00000425492 856 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
COL5A1P20908 KHDC1-207ENST00000610435 1101 ntAPPRIS P3 TSL 5 BASIC19.18■□□□□ 0.66
COL5A1P20908 KIF2A-202ENST00000401507 2539 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
COL5A1P20908 DALRD3-202ENST00000341949 1739 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
COL5A1P20908 CEMP1-202ENST00000567119 1374 ntAPPRIS P2 BASIC19.18■□□□□ 0.66
COL5A1P20908 DMAP1-202ENST00000361745 1545 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
COL5A1P20908 GPR27-201ENST00000304411 2447 ntAPPRIS P1 BASIC19.18■□□□□ 0.66
COL5A1P20908 DTX3-201ENST00000337737 2029 ntAPPRIS P3 TSL 2 BASIC19.18■□□□□ 0.66
COL5A1P20908 YY1AP1-214ENST00000407221 2705 ntAPPRIS ALT2 TSL 2 BASIC19.18■□□□□ 0.66
COL5A1P20908 COMMD1-201ENST00000311832 911 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
COL5A1P20908 CKS1B-203ENST00000368439 912 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
COL5A1P20908 NFU1-202ENST00000394305 1058 ntTSL 5 BASIC19.18■□□□□ 0.66
COL5A1P20908 GPM6B-204ENST00000398361 1033 ntTSL 2 BASIC19.18■□□□□ 0.66
COL5A1P20908 LIN28AP1-201ENST00000429574 405 ntBASIC19.18■□□□□ 0.66
COL5A1P20908 MFSD4A-206ENST00000489709 1136 ntTSL 5 BASIC19.18■□□□□ 0.66
COL5A1P20908 RAP1B-229ENST00000543393 874 ntTSL 3 BASIC19.18■□□□□ 0.66
COL5A1P20908 CALM3-208ENST00000596362 1203 ntAPPRIS P1 TSL 2 BASIC19.18■□□□□ 0.66
COL5A1P20908 TMEM114-203ENST00000620492 945 ntAPPRIS P1 TSL 2 BASIC19.18■□□□□ 0.66
COL5A1P20908 MYC-208ENST00000641036 567 ntBASIC19.18■□□□□ 0.66
COL5A1P20908 B4GALNT1-213ENST00000552350 1649 ntTSL 4 BASIC19.17■□□□□ 0.66
COL5A1P20908 LGALS8-AS1-201ENST00000487567 1457 ntBASIC19.17■□□□□ 0.66
COL5A1P20908 HS2ST1-202ENST00000370551 1585 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
COL5A1P20908 BIN1-207ENST00000357970 2497 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
COL5A1P20908 GPRC5C-204ENST00000392629 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
COL5A1P20908 TEX45-201ENST00000361664 1679 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
COL5A1P20908 PRR31-201ENST00000371629 978 ntTSL 2 BASIC19.17■□□□□ 0.66
COL5A1P20908 AL445645.1-201ENST00000451318 1019 ntTSL 2 BASIC19.17■□□□□ 0.66
COL5A1P20908 MIXL1-202ENST00000542034 839 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
COL5A1P20908 SYNGR4-202ENST00000595322 533 ntTSL 3 BASIC19.17■□□□□ 0.66
COL5A1P20908 AP001922.1-201ENST00000499390 1504 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
COL5A1P20908 SERPINB5-201ENST00000382771 2783 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
COL5A1P20908 NCF1-201ENST00000289473 1396 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
COL5A1P20908 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
COL5A1P20908 EGFL7-201ENST00000308874 1747 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
COL5A1P20908 RTN4-207ENST00000402434 1456 ntTSL 5 BASIC19.17■□□□□ 0.66
COL5A1P20908 HCK-203ENST00000375862 1806 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
COL5A1P20908 Z83844.2-201ENST00000456099 1945 ntTSL 2 BASIC19.17■□□□□ 0.66
COL5A1P20908 ZFP69B-202ENST00000411995 2109 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
COL5A1P20908 LRRC23-202ENST00000323702 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
COL5A1P20908 BOLA3-202ENST00000327428 639 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
COL5A1P20908 RXFP4-201ENST00000368318 1240 ntAPPRIS P1 BASIC19.16■□□□□ 0.66
COL5A1P20908 ZNF32-201ENST00000374433 1137 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
COL5A1P20908 CYB561D2-204ENST00000424512 1212 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
COL5A1P20908 ECEL1P2-202ENST00000465689 757 ntBASIC19.16■□□□□ 0.66
COL5A1P20908 WDR45-218ENST00000473974 1077 ntTSL 5 BASIC19.16■□□□□ 0.66
COL5A1P20908 STAC3-202ENST00000546246 1014 ntTSL 2 BASIC19.16■□□□□ 0.66
COL5A1P20908 PDCD2L-203ENST00000587065 492 ntTSL 3 BASIC19.16■□□□□ 0.66
COL5A1P20908 CROCCP4-202ENST00000633627 573 ntTSL 3 BASIC19.16■□□□□ 0.66
COL5A1P20908 CCDC185-201ENST00000366875 2054 ntAPPRIS P1 BASIC19.16■□□□□ 0.66
COL5A1P20908 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 48.1 ms