Protein–RNA interactions for Protein: P12004

PCNA, Proliferating cell nuclear antigen, humanhuman

Predictions only

Length 261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCNAP12004 CYP2A7-202ENST00000301146 2281 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
PCNAP12004 MARK1-202ENST00000366918 5169 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
PCNAP12004 UBXN6-201ENST00000301281 1943 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
PCNAP12004 TJP1-208ENST00000495972 2890 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
PCNAP12004 ETHE1-201ENST00000292147 963 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
PCNAP12004 CROCCP5-201ENST00000436658 830 ntBASIC19.34■□□□□ 0.69
PCNAP12004 AL645608.9-201ENST00000442292 829 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
PCNAP12004 AC008443.6-201ENST00000512508 500 ntTSL 4 BASIC19.34■□□□□ 0.69
PCNAP12004 C12orf75-205ENST00000549893 719 ntTSL 3 BASIC19.34■□□□□ 0.69
PCNAP12004 AC133552.2-202ENST00000575694 574 ntBASIC19.34■□□□□ 0.69
PCNAP12004 LRRC1-202ENST00000370888 3180 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
PCNAP12004 EGFR-204ENST00000420316 1570 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
PCNAP12004 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC19.34■□□□□ 0.69
PCNAP12004 MKRN4P-201ENST00000444706 1521 ntBASIC19.34■□□□□ 0.69
PCNAP12004 ACBD4-202ENST00000376955 1453 ntTSL 2 BASIC19.34■□□□□ 0.69
PCNAP12004 FUZ-212ENST00000528094 1479 ntTSL 2 BASIC19.34■□□□□ 0.69
PCNAP12004 QKI-205ENST00000392127 7911 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
PCNAP12004 RUVBL2-206ENST00000595090 2009 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
PCNAP12004 RTN1-202ENST00000342503 1703 ntAPPRIS ALT1 TSL 1 (best) BASIC19.34■□□□□ 0.69
PCNAP12004 KLC2-204ENST00000394067 2898 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
PCNAP12004 FAM217A-201ENST00000274673 2265 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
PCNAP12004 KRT19-201ENST00000361566 1390 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
PCNAP12004 NBPF9-209ENST00000621645 5632 ntAPPRIS ALT2 TSL 2 BASIC19.33■□□□□ 0.69
PCNAP12004 TINAGL1-211ENST00000537531 1841 ntAPPRIS ALT2 TSL 5 BASIC19.33■□□□□ 0.69
PCNAP12004 DLEU7-201ENST00000400393 2092 ntAPPRIS P3 TSL 1 (best) BASIC19.33■□□□□ 0.69
PCNAP12004 PPA1-202ENST00000373232 1295 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
PCNAP12004 ART5-202ENST00000397067 1154 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
PCNAP12004 LSM12P1-201ENST00000411836 588 ntBASIC19.33■□□□□ 0.68
PCNAP12004 RAP2CP1-201ENST00000605103 478 ntBASIC19.33■□□□□ 0.68
PCNAP12004 RNH1-202ENST00000356187 1791 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
PCNAP12004 RNF224-201ENST00000445101 1798 ntAPPRIS P1 TSL 3 BASIC19.33■□□□□ 0.68
PCNAP12004 LINC00482-201ENST00000332012 2023 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
PCNAP12004 TCIRG1-213ENST00000532635 2457 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
PCNAP12004 CCDC62-204ENST00000392441 2936 ntAPPRIS ALT2 TSL 5 BASIC19.33■□□□□ 0.68
PCNAP12004 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
PCNAP12004 AC091729.3-201ENST00000423008 1401 ntTSL 2 BASIC19.33■□□□□ 0.68
PCNAP12004 CCDC151-201ENST00000356392 2107 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
PCNAP12004 BCL7A-203ENST00000538010 6247 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
PCNAP12004 SORCS3-201ENST00000369699 5530 ntAPPRIS P1 TSL 5 BASIC19.32■□□□□ 0.68
PCNAP12004 DMPK-205ENST00000458663 2548 ntTSL 5 BASIC19.32■□□□□ 0.68
PCNAP12004 CDC14B-203ENST00000375242 2965 ntTSL 2 BASIC19.32■□□□□ 0.68
PCNAP12004 TAPT1-201ENST00000405303 4591 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
PCNAP12004 NAE1-201ENST00000290810 1837 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
PCNAP12004 GPT-205ENST00000528431 1822 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
PCNAP12004 ZNF598-204ENST00000563630 3371 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
PCNAP12004 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC19.32■□□□□ 0.68
PCNAP12004 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
PCNAP12004 SNAP91-211ENST00000520213 2168 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
PCNAP12004 DOK1-201ENST00000233668 2555 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
PCNAP12004 NPTX1-201ENST00000306773 5122 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
PCNAP12004 BEAN1-AS1-201ENST00000564618 533 ntTSL 4 BASIC19.32■□□□□ 0.68
PCNAP12004 ZNF263-205ENST00000574253 1139 ntTSL 2 BASIC19.32■□□□□ 0.68
PCNAP12004 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC19.32■□□□□ 0.68
PCNAP12004 MEN1-202ENST00000315422 3148 ntAPPRIS ALT1 TSL 5 BASIC19.32■□□□□ 0.68
PCNAP12004 C3orf33-201ENST00000340171 1884 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
PCNAP12004 FN3K-201ENST00000300784 1434 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
PCNAP12004 AQP11-201ENST00000313578 2152 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
PCNAP12004 PRSS33-204ENST00000576886 1755 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
PCNAP12004 DLG3-202ENST00000374355 5074 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
PCNAP12004 TCF3P1-201ENST00000423021 1937 ntBASIC19.31■□□□□ 0.68
PCNAP12004 COQ10A-201ENST00000308197 1652 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
PCNAP12004 FAM72A-203ENST00000367129 676 ntTSL 3 BASIC19.31■□□□□ 0.68
PCNAP12004 FAM72A-205ENST00000468509 629 ntTSL 5 BASIC19.31■□□□□ 0.68
PCNAP12004 ZNF302-209ENST00000507959 854 ntTSL 2 BASIC19.31■□□□□ 0.68
PCNAP12004 C11orf24-209ENST00000533310 980 ntAPPRIS ALT2 TSL 5 BASIC19.31■□□□□ 0.68
PCNAP12004 LINC01956-201ENST00000557729 695 ntTSL 5 BASIC19.31■□□□□ 0.68
PCNAP12004 TMEM44-203ENST00000381975 2197 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
PCNAP12004 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
PCNAP12004 RAPSN-205ENST00000529341 1408 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
PCNAP12004 MSLN-201ENST00000382862 2116 ntAPPRIS P3 TSL 5 BASIC19.31■□□□□ 0.68
PCNAP12004 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
PCNAP12004 KLHL2-201ENST00000226725 3134 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
PCNAP12004 DPP10-203ENST00000393147 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
PCNAP12004 ILDR2-207ENST00000529071 2566 ntAPPRIS ALT2 TSL 5 BASIC19.31■□□□□ 0.68
PCNAP12004 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC19.31■□□□□ 0.68
PCNAP12004 IL17RC-202ENST00000383812 2384 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
PCNAP12004 SCRN2-201ENST00000290216 1548 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
PCNAP12004 AC044802.1-201ENST00000501143 2894 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
PCNAP12004 SMARCC1-201ENST00000254480 6375 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
PCNAP12004 LINC01558-202ENST00000495520 1652 ntTSL 2 BASIC19.3■□□□□ 0.68
PCNAP12004 MBD3-201ENST00000156825 5518 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
PCNAP12004 UCHL5-204ENST00000367451 1346 ntTSL 5 BASIC19.3■□□□□ 0.68
PCNAP12004 STRN4-202ENST00000391910 3628 ntAPPRIS ALT1 TSL 5 BASIC19.3■□□□□ 0.68
PCNAP12004 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC19.3■□□□□ 0.68
PCNAP12004 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC19.3■□□□□ 0.68
PCNAP12004 TAF9-201ENST00000217893 1283 ntAPPRIS P2 TSL 1 (best) BASIC19.3■□□□□ 0.68
PCNAP12004 PRTN3-201ENST00000234347 1026 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
PCNAP12004 TRNT1-207ENST00000420393 854 ntTSL 3 BASIC19.3■□□□□ 0.68
PCNAP12004 ELAVL3-202ENST00000438662 1223 ntAPPRIS ALT1 TSL 5 BASIC19.3■□□□□ 0.68
PCNAP12004 HES2-205ENST00000487437 968 ntTSL 3 BASIC19.3■□□□□ 0.68
PCNAP12004 TPT1-AS1-210ENST00000520590 873 ntTSL 5 BASIC19.3■□□□□ 0.68
PCNAP12004 MMP25-AS1-204ENST00000572574 794 ntTSL 5 BASIC19.3■□□□□ 0.68
PCNAP12004 ANAPC11-208ENST00000572851 686 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
PCNAP12004 SDHA-201ENST00000264932 2390 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
PCNAP12004 SETD6-201ENST00000219315 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
PCNAP12004 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC19.3■□□□□ 0.68
PCNAP12004 NMRAL1-213ENST00000574733 1719 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
PCNAP12004 ARHGEF18-202ENST00000359920 5733 ntAPPRIS ALT2 TSL 2 BASIC19.3■□□□□ 0.68
PCNAP12004 CADPS2-202ENST00000334010 6045 ntAPPRIS ALT2 TSL 5 BASIC19.3■□□□□ 0.68
PCNAP12004 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC19.3■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 37.7 ms