Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 MTHFD1P1-201ENST00000413059 2764 ntBASIC11.02□□□□□ -0.65
CUX1P39880 KCNJ1-203ENST00000392664 1674 ntTSL 1 (best) BASIC11.02□□□□□ -0.65
CUX1P39880 PHLDB2-202ENST00000393925 5543 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
CUX1P39880 LRRC31-202ENST00000316428 2520 ntAPPRIS P3 TSL 1 (best) BASIC11.01□□□□□ -0.65
CUX1P39880 AC084816.1-210ENST00000540895 1920 ntTSL 2 BASIC11.01□□□□□ -0.65
CUX1P39880 DACH2-207ENST00000510272 1764 ntTSL 2 BASIC11.01□□□□□ -0.65
CUX1P39880 DNM1L-207ENST00000452533 4439 ntTSL 1 (best) BASIC11.01□□□□□ -0.65
CUX1P39880 AC027279.1-201ENST00000568885 4284 ntBASIC11.01□□□□□ -0.65
CUX1P39880 PTPN2-212ENST00000591497 3390 ntTSL 5 BASIC11.01□□□□□ -0.65
CUX1P39880 NUMB-203ENST00000359560 3309 ntAPPRIS P3 TSL 5 BASIC11.01□□□□□ -0.65
CUX1P39880 PIK3R3-202ENST00000372006 5019 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
CUX1P39880 SYT1-212ENST00000552744 2718 ntAPPRIS P3 TSL 1 (best) BASIC11.01□□□□□ -0.65
CUX1P39880 SLC20A1P1-201ENST00000413906 956 ntBASIC11.01□□□□□ -0.65
CUX1P39880 RPS26P39-201ENST00000469206 341 ntBASIC11.01□□□□□ -0.65
CUX1P39880 RN7SL284P-201ENST00000498823 275 ntBASIC11.01□□□□□ -0.65
CUX1P39880 AC127522.1-201ENST00000560531 751 ntTSL 2 BASIC11.01□□□□□ -0.65
CUX1P39880 AL136084.2-213ENST00000585704 690 ntTSL 5 BASIC11.01□□□□□ -0.65
CUX1P39880 AL136084.2-212ENST00000589976 654 ntTSL 5 BASIC11.01□□□□□ -0.65
CUX1P39880 AC026951.2-201ENST00000613847 241 ntBASIC11.01□□□□□ -0.65
CUX1P39880 GIGYF2-205ENST00000409547 5978 ntTSL 1 (best) BASIC11.01□□□□□ -0.65
CUX1P39880 TARS-201ENST00000265112 4314 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
CUX1P39880 TFRC-201ENST00000360110 5111 ntAPPRIS P3 TSL 1 (best) BASIC11.01□□□□□ -0.65
CUX1P39880 CSMD1-218ENST00000635120 11737 ntAPPRIS P2 TSL 5 BASIC11.01□□□□□ -0.65
CUX1P39880 RSRC1-203ENST00000464171 2411 ntTSL 5 BASIC11.01□□□□□ -0.65
CUX1P39880 PCM1-212ENST00000519253 6443 ntTSL 1 (best) BASIC11.01□□□□□ -0.65
CUX1P39880 CHORDC1-201ENST00000320585 2654 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
CUX1P39880 SLC8A1-201ENST00000332839 2922 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
CUX1P39880 ZSCAN5A-201ENST00000391713 3562 ntAPPRIS P3 TSL 1 (best) BASIC11.01□□□□□ -0.65
CUX1P39880 ATP1A4-201ENST00000368081 3839 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
CUX1P39880 CYP2C8-212ENST00000623108 1962 ntTSL 2 BASIC11.01□□□□□ -0.65
CUX1P39880 TET3-202ENST00000409262 11388 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
CUX1P39880 AC005154.1-228ENST00000454922 1405 ntTSL 1 (best) BASIC11□□□□□ -0.65
CUX1P39880 POU1F1-201ENST00000344265 1149 ntTSL 5 BASIC11□□□□□ -0.65
CUX1P39880 RNA5SP477-201ENST00000362639 119 ntBASIC11□□□□□ -0.65
CUX1P39880 RNA5SP346-201ENST00000363541 121 ntBASIC11□□□□□ -0.65
CUX1P39880 ODF2-AS1-201ENST00000420801 407 ntTSL 3 BASIC11□□□□□ -0.65
CUX1P39880 LCE6A-201ENST00000431011 628 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
CUX1P39880 LMCD1-AS1-202ENST00000439407 576 ntTSL 4 BASIC11□□□□□ -0.65
CUX1P39880 CLDN34-201ENST00000445307 995 ntAPPRIS P1 BASIC11□□□□□ -0.65
CUX1P39880 TVP23CP1-201ENST00000450317 639 ntBASIC11□□□□□ -0.65
CUX1P39880 AC211433.1-201ENST00000450426 686 ntTSL 4 BASIC11□□□□□ -0.65
CUX1P39880 RN7SL104P-201ENST00000498686 293 ntBASIC11□□□□□ -0.65
CUX1P39880 AC244502.3-201ENST00000555460 457 ntTSL 3 BASIC11□□□□□ -0.65
CUX1P39880 LINC00635-219ENST00000608506 482 ntTSL 5 BASIC11□□□□□ -0.65
CUX1P39880 IGSF1-206ENST00000370910 4406 ntAPPRIS ALT2 TSL 1 (best) BASIC11□□□□□ -0.65
CUX1P39880 NUMB-229ENST00000557597 3547 ntAPPRIS P3 TSL 1 (best) BASIC11□□□□□ -0.65
CUX1P39880 NEDD4L-209ENST00000456986 8436 ntTSL 1 (best) BASIC11□□□□□ -0.65
CUX1P39880 KIF21A-204ENST00000544797 5040 ntTSL 1 (best) BASIC11□□□□□ -0.65
CUX1P39880 ETS1-202ENST00000392668 5139 ntTSL 1 (best) BASIC11□□□□□ -0.65
CUX1P39880 OFD1P15Y-201ENST00000411536 1392 ntBASIC11□□□□□ -0.65
CUX1P39880 SMG1P5-202ENST00000529428 4219 ntBASIC11□□□□□ -0.65
CUX1P39880 SMG1P2-201ENST00000566127 4221 ntBASIC11□□□□□ -0.65
CUX1P39880 ZNF138-206ENST00000440598 2230 ntTSL 2 BASIC11□□□□□ -0.65
CUX1P39880 SCRN1-202ENST00000409497 1732 ntAPPRIS P1 TSL 2 BASIC11□□□□□ -0.65
CUX1P39880 AL355974.1-201ENST00000618896 1708 ntBASIC11□□□□□ -0.65
CUX1P39880 AC008163.1-201ENST00000636281 1455 ntTSL 5 BASIC11□□□□□ -0.65
CUX1P39880 NFRKB-203ENST00000524794 4351 ntTSL 1 (best) BASIC11□□□□□ -0.65
CUX1P39880 KLHL2-209ENST00000514860 2442 ntAPPRIS ALT2 TSL 2 BASIC11□□□□□ -0.65
CUX1P39880 NCOA3-202ENST00000371998 4668 ntAPPRIS P4 TSL 1 (best) BASIC11□□□□□ -0.65
CUX1P39880 LINC01441-201ENST00000433766 2290 ntTSL 2 BASIC11□□□□□ -0.65
CUX1P39880 PPP2R3A-201ENST00000264977 6795 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
CUX1P39880 MAP3K9-207ENST00000611979 10497 ntTSL 5 BASIC11□□□□□ -0.65
CUX1P39880 BMPR1A-201ENST00000372037 11255 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
CUX1P39880 LOXHD1-201ENST00000300591 3970 ntTSL 1 (best) BASIC11□□□□□ -0.65
CUX1P39880 PAX6-209ENST00000419022 6888 ntAPPRIS P4 TSL 1 (best) BASIC10.99□□□□□ -0.65
CUX1P39880 AL451046.1-201ENST00000406097 534 ntBASIC10.99□□□□□ -0.65
CUX1P39880 RN7SKP281-201ENST00000410472 352 ntBASIC10.99□□□□□ -0.65
CUX1P39880 PSMC1P2-201ENST00000423961 1204 ntBASIC10.99□□□□□ -0.65
CUX1P39880 AC011753.2-201ENST00000425576 610 ntTSL 5 BASIC10.99□□□□□ -0.65
CUX1P39880 AC068631.1-204ENST00000428501 534 ntTSL 3 BASIC10.99□□□□□ -0.65
CUX1P39880 LINC01372-201ENST00000430244 489 ntTSL 1 (best) BASIC10.99□□□□□ -0.65
CUX1P39880 AC007998.1-201ENST00000474156 672 ntBASIC10.99□□□□□ -0.65
CUX1P39880 OCIAD1-216ENST00000509122 1204 ntTSL 5 BASIC10.99□□□□□ -0.65
CUX1P39880 AC090572.3-201ENST00000519041 804 ntTSL 3 BASIC10.99□□□□□ -0.65
CUX1P39880 RN7SL404P-201ENST00000582421 281 ntBASIC10.99□□□□□ -0.65
CUX1P39880 GTSCR1-201ENST00000582578 470 ntTSL 3 BASIC10.99□□□□□ -0.65
CUX1P39880 NPIPB1P-202ENST00000588786 828 ntBASIC10.99□□□□□ -0.65
CUX1P39880 AC012370.2-201ENST00000597541 1080 ntTSL 5 BASIC10.99□□□□□ -0.65
CUX1P39880 AC011445.2-201ENST00000599274 173 ntBASIC10.99□□□□□ -0.65
CUX1P39880 AC091768.1-201ENST00000609258 930 ntBASIC10.99□□□□□ -0.65
CUX1P39880 AL512624.1-201ENST00000613638 469 ntBASIC10.99□□□□□ -0.65
CUX1P39880 REV3L-214ENST00000619481 969 ntTSL 5 BASIC10.99□□□□□ -0.65
CUX1P39880 TBX15-201ENST00000207157 3492 ntTSL 1 (best) BASIC10.99□□□□□ -0.65
CUX1P39880 OR4Q2-201ENST00000541415 2778 ntAPPRIS P5 BASIC10.99□□□□□ -0.65
CUX1P39880 AC008555.1-201ENST00000561778 2757 ntBASIC10.99□□□□□ -0.65
CUX1P39880 TMEM72-AS1-201ENST00000450287 3300 ntTSL 2 BASIC10.99□□□□□ -0.65
CUX1P39880 CD200R1-202ENST00000308611 2299 ntAPPRIS P4 TSL 1 (best) BASIC10.99□□□□□ -0.65
CUX1P39880 ZNF317-201ENST00000247956 4073 ntAPPRIS P3 TSL 1 (best) BASIC10.99□□□□□ -0.65
CUX1P39880 LYRM1-204ENST00000439021 1558 ntAPPRIS P1 TSL 2 BASIC10.99□□□□□ -0.65
CUX1P39880 AC084782.1-201ENST00000564401 2465 ntBASIC10.99□□□□□ -0.65
CUX1P39880 LNPK-212ENST00000544803 7647 ntTSL 1 (best) BASIC10.99□□□□□ -0.65
CUX1P39880 GFPT1-201ENST00000357308 8703 ntTSL 5 BASIC10.99□□□□□ -0.65
CUX1P39880 KIF13A-203ENST00000378814 6924 ntAPPRIS ALT2 TSL 1 (best) BASIC10.99□□□□□ -0.65
CUX1P39880 MAPK9-213ENST00000539014 1668 ntTSL 1 (best) BASIC10.99□□□□□ -0.65
CUX1P39880 TAF1-204ENST00000423759 7722 ntAPPRIS ALT2 TSL 5 BASIC10.99□□□□□ -0.65
CUX1P39880 PALM2-AKAP2-201ENST00000302798 4718 ntTSL 2 BASIC10.99□□□□□ -0.65
CUX1P39880 VPS13A-203ENST00000360280 15320 ntAPPRIS P4 TSL 1 (best) BASIC10.99□□□□□ -0.65
CUX1P39880 RN7SKP23-201ENST00000625159 4301 ntBASIC10.99□□□□□ -0.65
CUX1P39880 RETREG1-202ENST00000399793 3145 ntTSL 1 (best) BASIC10.99□□□□□ -0.65
CUX1P39880 MYOCD-203ENST00000425538 8466 ntAPPRIS ALT2 TSL 1 (best) BASIC10.99□□□□□ -0.65
Retrieved 100 of 98,524 protein–RNA pairs in 67.1 ms