Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 ZHX3-205ENST00000432768 3551 ntAPPRIS P1 TSL 2 BASIC7.02□□□□□ -1.29
HDDC3Q8N4P3 C10orf67-204ENST00000636213 3981 ntAPPRIS ALT2 TSL 5 BASIC7.01□□□□□ -1.29
HDDC3Q8N4P3 TMEM230-204ENST00000379277 1536 ntAPPRIS P1 TSL 3 BASIC7.01□□□□□ -1.29
HDDC3Q8N4P3 AC102941.1-201ENST00000567616 1537 ntBASIC7.01□□□□□ -1.29
HDDC3Q8N4P3 C8orf34-208ENST00000523686 1948 ntAPPRIS ALT2 TSL 2 BASIC7.01□□□□□ -1.29
HDDC3Q8N4P3 CDH7-201ENST00000323011 2728 ntAPPRIS P1 TSL 1 (best) BASIC7.01□□□□□ -1.29
HDDC3Q8N4P3 DLG2-209ENST00000418306 3027 ntTSL 2 BASIC7.01□□□□□ -1.29
HDDC3Q8N4P3 GAPVD1-202ENST00000297933 6003 ntAPPRIS ALT2 TSL 1 (best) BASIC7.01□□□□□ -1.29
HDDC3Q8N4P3 C11orf54-207ENST00000528288 4094 ntTSL 1 (best) BASIC7.01□□□□□ -1.29
HDDC3Q8N4P3 TLR10-202ENST00000361424 3484 ntAPPRIS P1 TSL 1 (best) BASIC7.01□□□□□ -1.29
HDDC3Q8N4P3 CDKL5-201ENST00000379989 3463 ntTSL 1 (best) BASIC7.01□□□□□ -1.29
HDDC3Q8N4P3 MAK-205ENST00000538030 2459 ntTSL 1 (best) BASIC7.01□□□□□ -1.29
HDDC3Q8N4P3 TMBIM6-209ENST00000547798 2494 ntAPPRIS ALT2 TSL 2 BASIC7.01□□□□□ -1.29
HDDC3Q8N4P3 ZNF426-202ENST00000535489 2375 ntAPPRIS P3 TSL 1 (best) BASIC7.01□□□□□ -1.29
HDDC3Q8N4P3 UNC80-201ENST00000272845 13440 ntTSL 5 BASIC7.01□□□□□ -1.29
HDDC3Q8N4P3 TEX14-203ENST00000389934 4927 ntAPPRIS P4 TSL 1 (best) BASIC7.01□□□□□ -1.29
HDDC3Q8N4P3 CLPS-201ENST00000259938 526 ntAPPRIS P1 TSL 1 (best) BASIC7.01□□□□□ -1.29
HDDC3Q8N4P3 OR1Q1-201ENST00000297913 945 ntAPPRIS P1 BASIC7.01□□□□□ -1.29
HDDC3Q8N4P3 UBE2D3-204ENST00000349311 838 ntAPPRIS ALT1 TSL 2 BASIC7.01□□□□□ -1.29
HDDC3Q8N4P3 HHLA3-201ENST00000359875 898 ntAPPRIS ALT2 TSL 1 (best) BASIC7.01□□□□□ -1.29
HDDC3Q8N4P3 RN7SKP77-201ENST00000363261 353 ntBASIC7.01□□□□□ -1.29
HDDC3Q8N4P3 AP000812.1-201ENST00000378140 477 ntTSL 3 BASIC7.01□□□□□ -1.29
HDDC3Q8N4P3 MIR1282-201ENST00000408865 101 ntBASIC7.01□□□□□ -1.29
HDDC3Q8N4P3 AL139231.1-201ENST00000431001 312 ntTSL 3 BASIC7.01□□□□□ -1.29
HDDC3Q8N4P3 HSFX3-201ENST00000431993 1264 ntAPPRIS P1 TSL 3 BASIC7.01□□□□□ -1.29
HDDC3Q8N4P3 AL391361.2-203ENST00000443380 413 ntTSL 2 BASIC7.01□□□□□ -1.29
HDDC3Q8N4P3 AL390728.3-201ENST00000452704 270 ntBASIC7.01□□□□□ -1.29
HDDC3Q8N4P3 RN7SL83P-201ENST00000468131 297 ntBASIC7.01□□□□□ -1.29
HDDC3Q8N4P3 RN7SL390P-201ENST00000470634 284 ntBASIC7.01□□□□□ -1.29
HDDC3Q8N4P3 AC008906.1-201ENST00000512856 993 ntTSL 5 BASIC7.01□□□□□ -1.29
HDDC3Q8N4P3 AC092674.1-201ENST00000513871 571 ntTSL 4 BASIC7.01□□□□□ -1.29
HDDC3Q8N4P3 AC137549.1-201ENST00000514243 533 ntBASIC7.01□□□□□ -1.29
HDDC3Q8N4P3 AC105150.1-201ENST00000518011 551 ntTSL 3 BASIC7.01□□□□□ -1.29
HDDC3Q8N4P3 AF117829.1-205ENST00000524190 383 ntTSL 3 BASIC7.01□□□□□ -1.29
HDDC3Q8N4P3 AC027288.1-201ENST00000548359 816 ntTSL 3 BASIC7.01□□□□□ -1.29
HDDC3Q8N4P3 LINC02406-201ENST00000553029 546 ntTSL 3 BASIC7.01□□□□□ -1.29
HDDC3Q8N4P3 PPIAP6-201ENST00000557078 499 ntBASIC7.01□□□□□ -1.29
HDDC3Q8N4P3 AC013283.1-201ENST00000557282 492 ntBASIC7.01□□□□□ -1.29
HDDC3Q8N4P3 LINC01919-203ENST00000581198 598 ntTSL 3 BASIC7.01□□□□□ -1.29
HDDC3Q8N4P3 AC068418.1-201ENST00000582990 404 ntTSL 3 BASIC7.01□□□□□ -1.29
HDDC3Q8N4P3 AC009955.2-201ENST00000597288 542 ntBASIC7.01□□□□□ -1.29
HDDC3Q8N4P3 AC010519.1-201ENST00000599924 344 ntTSL 5 BASIC7.01□□□□□ -1.29
HDDC3Q8N4P3 AP005329.3-201ENST00000609924 686 ntBASIC7.01□□□□□ -1.29
HDDC3Q8N4P3 5S_rRNA.23-201ENST00000612086 102 ntBASIC7.01□□□□□ -1.29
HDDC3Q8N4P3 HOXA11-AS1_3.1-201ENST00000613383 98 ntBASIC7.01□□□□□ -1.29
HDDC3Q8N4P3 PRL-202ENST00000615510 1268 ntTSL 1 (best) BASIC7.01□□□□□ -1.29
HDDC3Q8N4P3 CLPS-202ENST00000616014 436 ntTSL 1 (best) BASIC7.01□□□□□ -1.29
HDDC3Q8N4P3 AP005212.3-201ENST00000619964 528 ntBASIC7.01□□□□□ -1.29
HDDC3Q8N4P3 MIR6823-201ENST00000622118 61 ntBASIC7.01□□□□□ -1.29
HDDC3Q8N4P3 MIR6806-201ENST00000622141 64 ntBASIC7.01□□□□□ -1.29
HDDC3Q8N4P3 BDNF-207ENST00000395986 3979 ntTSL 1 (best) BASIC7.01□□□□□ -1.29
HDDC3Q8N4P3 AL671511.1-201ENST00000425033 3458 ntTSL 2 BASIC7.01□□□□□ -1.29
HDDC3Q8N4P3 PDE8B-208ENST00000505283 3474 ntTSL 1 (best) BASIC7.01□□□□□ -1.29
HDDC3Q8N4P3 BIRC6-201ENST00000421745 15703 ntAPPRIS P1 TSL 1 (best) BASIC7.01□□□□□ -1.29
HDDC3Q8N4P3 ZFP2-202ENST00000520301 2043 ntAPPRIS P1 TSL 5 BASIC7.01□□□□□ -1.29
HDDC3Q8N4P3 ZNF585A-201ENST00000292841 8618 ntAPPRIS P1 TSL 1 (best) BASIC7.01□□□□□ -1.29
HDDC3Q8N4P3 KAT14-202ENST00000435364 3618 ntAPPRIS P2 TSL 1 (best) BASIC7.01□□□□□ -1.29
HDDC3Q8N4P3 AC099654.3-201ENST00000447087 1546 ntBASIC7.01□□□□□ -1.29
HDDC3Q8N4P3 LINC02347-201ENST00000397346 2458 ntTSL 1 (best) BASIC7.01□□□□□ -1.29
HDDC3Q8N4P3 APOL4-212ENST00000616056 3423 ntAPPRIS ALT2 TSL 1 (best) BASIC7.01□□□□□ -1.29
HDDC3Q8N4P3 TYW1B-203ENST00000620995 3113 ntAPPRIS P1 TSL 1 (best) BASIC7.01□□□□□ -1.29
HDDC3Q8N4P3 AQP4-AS1-202ENST00000578701 2177 ntTSL 1 (best) BASIC7.01□□□□□ -1.29
HDDC3Q8N4P3 ADI1-202ENST00000382093 3870 ntTSL 2 BASIC7.01□□□□□ -1.29
HDDC3Q8N4P3 PAK5-201ENST00000353224 4500 ntAPPRIS P1 TSL 1 (best) BASIC7□□□□□ -1.29
HDDC3Q8N4P3 YES1-201ENST00000314574 4441 ntAPPRIS P1 TSL 1 (best) BASIC7□□□□□ -1.29
HDDC3Q8N4P3 CEBPZ-201ENST00000234170 3463 ntAPPRIS P1 TSL 1 (best) BASIC7□□□□□ -1.29
HDDC3Q8N4P3 BROX-201ENST00000340934 4124 ntAPPRIS P1 TSL 1 (best) BASIC7□□□□□ -1.29
HDDC3Q8N4P3 TGFBR3-202ENST00000370399 4550 ntAPPRIS ALT1 TSL 1 (best) BASIC7□□□□□ -1.29
HDDC3Q8N4P3 ADGRA3-209ENST00000508133 1572 ntTSL 1 (best) BASIC7□□□□□ -1.29
HDDC3Q8N4P3 ANAPC5-204ENST00000441917 2147 ntTSL 5 BASIC7□□□□□ -1.29
HDDC3Q8N4P3 LIPF-201ENST00000238983 1376 ntAPPRIS P1 TSL 1 (best) BASIC7□□□□□ -1.29
HDDC3Q8N4P3 C1D-202ENST00000407324 1379 ntTSL 3 BASIC7□□□□□ -1.29
HDDC3Q8N4P3 GPRIN3-202ENST00000609438 14244 ntAPPRIS P1 TSL 2 BASIC7□□□□□ -1.29
HDDC3Q8N4P3 SORBS2-230ENST00000448662 4356 ntTSL 2 BASIC7□□□□□ -1.29
HDDC3Q8N4P3 LINC02073-201ENST00000588341 2845 ntTSL 2 BASIC7□□□□□ -1.29
HDDC3Q8N4P3 RNA5SP382-201ENST00000363355 112 ntBASIC7□□□□□ -1.29
HDDC3Q8N4P3 RN7SKP130-201ENST00000364924 301 ntBASIC7□□□□□ -1.29
HDDC3Q8N4P3 PFKFB1-201ENST00000374992 1156 ntTSL 1 (best) BASIC7□□□□□ -1.29
HDDC3Q8N4P3 AC026310.1-201ENST00000396004 378 ntBASIC7□□□□□ -1.29
HDDC3Q8N4P3 LINC00308-201ENST00000419431 727 ntTSL 5 BASIC7□□□□□ -1.29
HDDC3Q8N4P3 VDAC1P2-201ENST00000423609 850 ntBASIC7□□□□□ -1.29
HDDC3Q8N4P3 AC000089.1-201ENST00000424559 801 ntBASIC7□□□□□ -1.29
HDDC3Q8N4P3 LSM3P3-201ENST00000436601 306 ntBASIC7□□□□□ -1.29
HDDC3Q8N4P3 ZNF138-205ENST00000440155 1066 ntAPPRIS P3 TSL 2 BASIC7□□□□□ -1.29
HDDC3Q8N4P3 AC016722.1-201ENST00000453936 652 ntTSL 5 BASIC7□□□□□ -1.29
HDDC3Q8N4P3 RN7SL170P-201ENST00000487098 295 ntBASIC7□□□□□ -1.29
HDDC3Q8N4P3 RPL37P23-201ENST00000492641 294 ntBASIC7□□□□□ -1.29
HDDC3Q8N4P3 ZNF138-207ENST00000494380 842 ntTSL 2 BASIC7□□□□□ -1.29
HDDC3Q8N4P3 MTCYBP44-201ENST00000514835 823 ntBASIC7□□□□□ -1.29
HDDC3Q8N4P3 AC025524.2-206ENST00000517953 439 ntTSL 3 BASIC7□□□□□ -1.29
HDDC3Q8N4P3 AC245519.1-201ENST00000522799 512 ntTSL 4 BASIC7□□□□□ -1.29
HDDC3Q8N4P3 OR4A41P-201ENST00000533053 928 ntBASIC7□□□□□ -1.29
HDDC3Q8N4P3 AC007537.1-201ENST00000539347 327 ntBASIC7□□□□□ -1.29
HDDC3Q8N4P3 AC126323.5-201ENST00000569913 592 ntTSL 3 BASIC7□□□□□ -1.29
HDDC3Q8N4P3 MIR3154-201ENST00000577829 84 ntBASIC7□□□□□ -1.29
HDDC3Q8N4P3 MIR4732-201ENST00000581873 76 ntBASIC7□□□□□ -1.29
HDDC3Q8N4P3 RPS11-205ENST00000599561 430 ntTSL 5 BASIC7□□□□□ -1.29
HDDC3Q8N4P3 AC004448.4-210ENST00000610229 833 ntTSL 5 BASIC7□□□□□ -1.29
HDDC3Q8N4P3 MIR663AHG-237ENST00000615682 1030 ntTSL 1 (best) BASIC7□□□□□ -1.29
HDDC3Q8N4P3 AC027348.2-201ENST00000624375 642 ntBASIC7□□□□□ -1.29
Retrieved 100 of 98,524 protein–RNA pairs in 83.4 ms