Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 AC002059.1-201ENST00000608014 477 ntBASIC7.87□□□□□ -1.15
MSX1P28360 AC004948.1-201ENST00000609858 672 ntBASIC7.87□□□□□ -1.15
MSX1P28360 PART1_1.1-201ENST00000611761 217 ntBASIC7.87□□□□□ -1.15
MSX1P28360 AC008162.2-201ENST00000613352 291 ntAPPRIS P1 TSL 3 BASIC7.87□□□□□ -1.15
MSX1P28360 AL353626.1-201ENST00000613429 507 ntTSL 5 BASIC7.87□□□□□ -1.15
MSX1P28360 PDZK1P1-203ENST00000616036 577 ntTSL 4 BASIC7.87□□□□□ -1.15
MSX1P28360 AL157786.1-207ENST00000627771 695 ntBASIC7.87□□□□□ -1.15
MSX1P28360 PCMTD1P7-201ENST00000634506 357 ntBASIC7.87□□□□□ -1.15
MSX1P28360 ZNF665-201ENST00000396424 4159 ntAPPRIS P1 TSL 2 BASIC7.87□□□□□ -1.15
MSX1P28360 ANKFY1-201ENST00000341657 7418 ntAPPRIS ALT1 TSL 5 BASIC7.87□□□□□ -1.15
MSX1P28360 DPH3-202ENST00000383775 3052 ntTSL 2 BASIC7.87□□□□□ -1.15
MSX1P28360 YAP1-203ENST00000524575 1638 ntTSL 2 BASIC7.87□□□□□ -1.15
MSX1P28360 ZEB2-227ENST00000627532 9541 ntAPPRIS P2 TSL 1 (best) BASIC7.87□□□□□ -1.15
MSX1P28360 FRRS1-201ENST00000287474 2678 ntAPPRIS P1 TSL 2 BASIC7.87□□□□□ -1.15
MSX1P28360 CD164-201ENST00000275080 2954 ntTSL 1 (best) BASIC7.87□□□□□ -1.15
MSX1P28360 MSL3-203ENST00000361672 2256 ntTSL 2 BASIC7.87□□□□□ -1.15
MSX1P28360 SH3BGRL-201ENST00000373212 1923 ntAPPRIS P1 TSL 1 (best) BASIC7.87□□□□□ -1.15
MSX1P28360 AC092326.2-201ENST00000624772 1561 ntBASIC7.87□□□□□ -1.15
MSX1P28360 IQGAP1-214ENST00000560738 3602 ntTSL 5 BASIC7.87□□□□□ -1.15
MSX1P28360 ENY2-211ENST00000521688 2922 ntTSL 1 (best) BASIC7.87□□□□□ -1.15
MSX1P28360 NUSAP1-210ENST00000560177 2232 ntAPPRIS ALT2 TSL 1 (best) BASIC7.87□□□□□ -1.15
MSX1P28360 TRIM16-202ENST00000416464 3184 ntTSL 2 BASIC7.87□□□□□ -1.15
MSX1P28360 FGL1-203ENST00000398054 1462 ntAPPRIS P1 TSL 5 BASIC7.87□□□□□ -1.15
MSX1P28360 SLFN11-202ENST00000394566 5030 ntAPPRIS P1 TSL 2 BASIC7.87□□□□□ -1.15
MSX1P28360 KIF23-201ENST00000260363 3713 ntAPPRIS P4 TSL 1 (best) BASIC7.87□□□□□ -1.15
MSX1P28360 ADD2-204ENST00000407644 3741 ntAPPRIS P4 TSL 1 (best) BASIC7.87□□□□□ -1.15
MSX1P28360 PRR27-202ENST00000502294 3007 ntAPPRIS P1 TSL 1 (best) BASIC7.86□□□□□ -1.15
MSX1P28360 RUBCNL-202ENST00000378784 2361 ntAPPRIS ALT2 TSL 1 (best) BASIC7.86□□□□□ -1.15
MSX1P28360 AL583836.1-201ENST00000464755 2395 ntAPPRIS P1 TSL 2 BASIC7.86□□□□□ -1.15
MSX1P28360 ZNF143-204ENST00000396604 2696 ntAPPRIS ALT1 TSL 5 BASIC7.86□□□□□ -1.15
MSX1P28360 AC015813.3-201ENST00000584805 6113 ntTSL 1 (best) BASIC7.86□□□□□ -1.15
MSX1P28360 PPFIBP2-216ENST00000530181 2965 ntAPPRIS ALT2 TSL 2 BASIC7.86□□□□□ -1.15
MSX1P28360 AC000036.1-201ENST00000449652 2030 ntTSL 1 (best) BASIC7.86□□□□□ -1.15
MSX1P28360 TXNRD1-219ENST00000529546 2018 ntTSL 2 BASIC7.86□□□□□ -1.15
MSX1P28360 MAPK8-201ENST00000360332 5438 ntTSL 1 (best) BASIC7.86□□□□□ -1.15
MSX1P28360 AC016205.1-201ENST00000591629 2306 ntTSL 2 BASIC7.86□□□□□ -1.15
MSX1P28360 SUPT7L-201ENST00000337768 4488 ntAPPRIS P3 TSL 1 (best) BASIC7.86□□□□□ -1.15
MSX1P28360 NLRC4-201ENST00000342905 1362 ntTSL 1 (best) BASIC7.86□□□□□ -1.15
MSX1P28360 OR10AB1P-202ENST00000641219 1686 ntBASIC7.86□□□□□ -1.15
MSX1P28360 B4GALNT2-202ENST00000393354 8657 ntAPPRIS ALT2 TSL 1 (best) BASIC7.86□□□□□ -1.15
MSX1P28360 TARS-201ENST00000265112 4314 ntAPPRIS P1 TSL 1 (best) BASIC7.86□□□□□ -1.15
MSX1P28360 ARID5B-202ENST00000309334 3141 ntTSL 5 BASIC7.86□□□□□ -1.15
MSX1P28360 MUC20-204ENST00000445522 2842 ntAPPRIS ALT2 TSL 2 BASIC7.86□□□□□ -1.15
MSX1P28360 SLC13A1-204ENST00000539873 2222 ntTSL 5 BASIC7.86□□□□□ -1.15
MSX1P28360 AC092999.1-201ENST00000624004 1924 ntBASIC7.86□□□□□ -1.15
MSX1P28360 CFHR3-201ENST00000367425 1645 ntAPPRIS P1 TSL 1 (best) BASIC7.86□□□□□ -1.15
MSX1P28360 RAD9B-203ENST00000409246 2794 ntTSL 2 BASIC7.86□□□□□ -1.15
MSX1P28360 STX2-203ENST00000392373 2151 ntAPPRIS P4 TSL 5 BASIC7.86□□□□□ -1.15
MSX1P28360 TAPT1-AS1-201ENST00000570786 2165 ntTSL 5 BASIC7.86□□□□□ -1.15
MSX1P28360 CALML4-203ENST00000395465 4155 ntTSL 1 (best) BASIC7.86□□□□□ -1.15
MSX1P28360 GABRQ-201ENST00000598523 6172 ntAPPRIS P1 TSL 1 (best) BASIC7.86□□□□□ -1.15
MSX1P28360 ZNF610-207ENST00000601151 2723 ntAPPRIS ALT2 TSL 1 (best) BASIC7.86□□□□□ -1.15
MSX1P28360 GSTO2-202ENST00000369707 6423 ntTSL 1 (best) BASIC7.86□□□□□ -1.15
MSX1P28360 ZNF611-219ENST00000602162 3299 ntTSL 2 BASIC7.86□□□□□ -1.15
MSX1P28360 TRPC5-201ENST00000262839 5839 ntAPPRIS P1 TSL 1 (best) BASIC7.86□□□□□ -1.15
MSX1P28360 RNU6-500P-201ENST00000362349 107 ntBASIC7.86□□□□□ -1.15
MSX1P28360 VTRNA1-2-201ENST00000365241 89 ntBASIC7.86□□□□□ -1.15
MSX1P28360 MOSPD1-201ENST00000370777 784 ntAPPRIS ALT1 TSL 5 BASIC7.86□□□□□ -1.15
MSX1P28360 MIR185-201ENST00000385288 82 ntBASIC7.86□□□□□ -1.15
MSX1P28360 MIR4435-2HG-203ENST00000409569 514 ntTSL 1 (best) BASIC7.86□□□□□ -1.15
MSX1P28360 AC006547.2-201ENST00000412713 526 ntTSL 4 BASIC7.86□□□□□ -1.15
MSX1P28360 AL513302.1-201ENST00000415679 428 ntBASIC7.86□□□□□ -1.15
MSX1P28360 OCM-202ENST00000416608 623 ntAPPRIS P1 TSL 5 BASIC7.86□□□□□ -1.15
MSX1P28360 AC004448.2-201ENST00000422360 586 ntBASIC7.86□□□□□ -1.15
MSX1P28360 AC110995.1-202ENST00000422914 860 ntTSL 3 BASIC7.86□□□□□ -1.15
MSX1P28360 LINC01934-202ENST00000424170 686 ntTSL 4 BASIC7.86□□□□□ -1.15
MSX1P28360 LINC01811-202ENST00000424786 787 ntTSL 5 BASIC7.86□□□□□ -1.15
MSX1P28360 AC005189.1-201ENST00000431286 310 ntBASIC7.86□□□□□ -1.15
MSX1P28360 LINC01423-202ENST00000436845 423 ntTSL 2 BASIC7.86□□□□□ -1.15
MSX1P28360 AL022157.1-201ENST00000439622 665 ntTSL 2 BASIC7.86□□□□□ -1.15
MSX1P28360 AL033379.1-201ENST00000442184 481 ntTSL 3 BASIC7.86□□□□□ -1.15
MSX1P28360 LINC02530-201ENST00000457945 894 ntTSL 1 (best) BASIC7.86□□□□□ -1.15
MSX1P28360 ABCA9-AS1-201ENST00000458677 523 ntTSL 2 BASIC7.86□□□□□ -1.15
MSX1P28360 RPL12P21-201ENST00000472214 518 ntBASIC7.86□□□□□ -1.15
MSX1P28360 RN7SL77P-201ENST00000473332 294 ntBASIC7.86□□□□□ -1.15
MSX1P28360 PDCD10-218ENST00000497056 1276 ntAPPRIS P1 TSL 1 (best) BASIC7.86□□□□□ -1.15
MSX1P28360 AC105924.1-201ENST00000504057 339 ntTSL 3 BASIC7.86□□□□□ -1.15
MSX1P28360 GSTO3P-201ENST00000504733 718 ntBASIC7.86□□□□□ -1.15
MSX1P28360 CWC27-204ENST00000508024 2103 ntTSL 1 (best) BASIC7.86□□□□□ -1.15
MSX1P28360 AC145146.2-202ENST00000508118 326 ntTSL 3 BASIC7.86□□□□□ -1.15
MSX1P28360 LINC01060-205ENST00000512839 716 ntTSL 1 (best) BASIC7.86□□□□□ -1.15
MSX1P28360 AC109588.1-202ENST00000515720 880 ntTSL 3 BASIC7.86□□□□□ -1.15
MSX1P28360 RPS20-204ENST00000519606 424 ntTSL 3 BASIC7.86□□□□□ -1.15
MSX1P28360 ERLIN2-210ENST00000523107 771 ntTSL 3 BASIC7.86□□□□□ -1.15
MSX1P28360 GTF2H1-208ENST00000526630 932 ntTSL 2 BASIC7.86□□□□□ -1.15
MSX1P28360 RPL41-204ENST00000546591 699 ntAPPRIS P1 TSL 1 (best) BASIC7.86□□□□□ -1.15
MSX1P28360 TAS2R38-201ENST00000547270 1143 ntAPPRIS P1 BASIC7.86□□□□□ -1.15
MSX1P28360 TEX49-202ENST00000548380 573 ntAPPRIS P1 TSL 1 (best) BASIC7.86□□□□□ -1.15
MSX1P28360 AC007424.1-205ENST00000552615 579 ntTSL 4 BASIC7.86□□□□□ -1.15
MSX1P28360 LINC02345-203ENST00000558897 405 ntTSL 3 BASIC7.86□□□□□ -1.15
MSX1P28360 AC040918.1-201ENST00000560056 632 ntTSL 2 BASIC7.86□□□□□ -1.15
MSX1P28360 AC009063.1-201ENST00000563342 702 ntBASIC7.86□□□□□ -1.15
MSX1P28360 AMZ2-204ENST00000577273 895 ntTSL 5 BASIC7.86□□□□□ -1.15
MSX1P28360 AC005154.1-222ENST00000579024 341 ntTSL 5 BASIC7.86□□□□□ -1.15
MSX1P28360 RN7SL468P-201ENST00000582256 294 ntBASIC7.86□□□□□ -1.15
MSX1P28360 AC105243.1-202ENST00000583942 847 ntTSL 3 BASIC7.86□□□□□ -1.15
MSX1P28360 RPL7L1P5-201ENST00000590816 738 ntBASIC7.86□□□□□ -1.15
MSX1P28360 LINC02073-202ENST00000592081 535 ntTSL 4 BASIC7.86□□□□□ -1.15
MSX1P28360 AC008946.1-201ENST00000599756 421 ntTSL 3 BASIC7.86□□□□□ -1.15
MSX1P28360 AC068276.1-201ENST00000605793 379 ntBASIC7.86□□□□□ -1.15
Retrieved 100 of 98,524 protein–RNA pairs in 103.4 ms