Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 AC068831.6-201ENST00000560522 795 ntTSL 3 BASIC6.08□□□□□ -1.44
NKX3-1Q99801 RN7SL667P-201ENST00000582817 298 ntBASIC6.08□□□□□ -1.44
NKX3-1Q99801 RPSAP66-201ENST00000592196 606 ntBASIC6.08□□□□□ -1.44
NKX3-1Q99801 AC005154.6-201ENST00000598361 687 ntAPPRIS P1 TSL 5 BASIC6.08□□□□□ -1.44
NKX3-1Q99801 LINC00632-203ENST00000602535 723 ntTSL 5 BASIC6.08□□□□□ -1.44
NKX3-1Q99801 AL023806.2-201ENST00000603042 263 ntBASIC6.08□□□□□ -1.44
NKX3-1Q99801 AP001554.1-201ENST00000604533 376 ntBASIC6.08□□□□□ -1.44
NKX3-1Q99801 FAM27E3-202ENST00000614611 340 ntBASIC6.08□□□□□ -1.44
NKX3-1Q99801 ENSA-215ENST00000638926 360 ntTSL 5 BASIC6.08□□□□□ -1.44
NKX3-1Q99801 LRMP-204ENST00000547044 2208 ntAPPRIS P2 TSL 1 (best) BASIC6.08□□□□□ -1.44
NKX3-1Q99801 CABYR-216ENST00000621648 2226 ntAPPRIS P4 TSL 1 (best) BASIC6.08□□□□□ -1.44
NKX3-1Q99801 ZCCHC6-206ENST00000375963 5379 ntAPPRIS P1 TSL 5 BASIC6.08□□□□□ -1.44
NKX3-1Q99801 OXCT1-206ENST00000512084 1593 ntTSL 2 BASIC6.08□□□□□ -1.44
NKX3-1Q99801 AC007731.1-202ENST00000610338 1870 ntTSL 5 BASIC6.08□□□□□ -1.44
NKX3-1Q99801 TMEM269-204ENST00000637012 3354 ntAPPRIS ALT2 TSL 5 BASIC6.08□□□□□ -1.44
NKX3-1Q99801 MCFD2-206ENST00000409800 3955 ntTSL 4 BASIC6.08□□□□□ -1.44
NKX3-1Q99801 KIF1B-204ENST00000377086 10669 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
NKX3-1Q99801 ANGPT1-206ENST00000520734 1526 ntTSL 2 BASIC6.08□□□□□ -1.44
NKX3-1Q99801 ZNF33B-201ENST00000359467 5958 ntAPPRIS P2 TSL 1 (best) BASIC6.08□□□□□ -1.44
NKX3-1Q99801 USP16-204ENST00000399976 2963 ntAPPRIS P3 TSL 1 (best) BASIC6.08□□□□□ -1.44
NKX3-1Q99801 AC087392.3-202ENST00000358446 1754 ntBASIC6.08□□□□□ -1.44
NKX3-1Q99801 AMY1A-201ENST00000370083 1790 ntAPPRIS P1 TSL 1 (best) BASIC6.08□□□□□ -1.44
NKX3-1Q99801 UPF2-201ENST00000356352 5569 ntAPPRIS P1 TSL 1 (best) BASIC6.08□□□□□ -1.44
NKX3-1Q99801 APOL4-203ENST00000352371 3227 ntAPPRIS P4 TSL 1 (best) BASIC6.08□□□□□ -1.44
NKX3-1Q99801 ZNF969P-201ENST00000510345 2341 ntBASIC6.08□□□□□ -1.44
NKX3-1Q99801 FCF1-201ENST00000341162 4341 ntAPPRIS P1 TSL 1 (best) BASIC6.08□□□□□ -1.44
NKX3-1Q99801 AC005034.3-201ENST00000604845 1747 ntBASIC6.08□□□□□ -1.44
NKX3-1Q99801 AC006305.1-201ENST00000382897 2558 ntTSL 2 BASIC6.08□□□□□ -1.44
NKX3-1Q99801 HYKK-205ENST00000566332 1422 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
NKX3-1Q99801 EIF5AL1-201ENST00000520547 3840 ntAPPRIS P1 BASIC6.07□□□□□ -1.44
NKX3-1Q99801 PCLO-203ENST00000423517 17147 ntTSL 5 BASIC6.07□□□□□ -1.44
NKX3-1Q99801 RTN4-205ENST00000394609 1898 ntAPPRIS P1 TSL 1 (best) BASIC6.07□□□□□ -1.44
NKX3-1Q99801 AL606490.2-201ENST00000457562 1330 ntBASIC6.07□□□□□ -1.44
NKX3-1Q99801 LRRC7-203ENST00000370958 2375 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
NKX3-1Q99801 AC104837.1-201ENST00000444644 1587 ntBASIC6.07□□□□□ -1.44
NKX3-1Q99801 AC022306.1-201ENST00000560489 1562 ntBASIC6.07□□□□□ -1.44
NKX3-1Q99801 CDON-201ENST00000263577 4186 ntAPPRIS P3 TSL 1 (best) BASIC6.07□□□□□ -1.44
NKX3-1Q99801 SLMAP-202ENST00000295952 4420 ntAPPRIS P1 TSL 2 BASIC6.07□□□□□ -1.44
NKX3-1Q99801 UQCC1-208ENST00000397554 3638 ntTSL 2 BASIC6.07□□□□□ -1.44
NKX3-1Q99801 KIAA1524-207ENST00000619684 2839 ntAPPRIS ALT1 TSL 5 BASIC6.07□□□□□ -1.44
NKX3-1Q99801 PIP-201ENST00000291009 585 ntAPPRIS P1 TSL 1 (best) BASIC6.07□□□□□ -1.44
NKX3-1Q99801 ARMCX7P-201ENST00000372828 562 ntBASIC6.07□□□□□ -1.44
NKX3-1Q99801 CYTOR-204ENST00000409898 560 ntTSL 5 BASIC6.07□□□□□ -1.44
NKX3-1Q99801 MTND6P1-201ENST00000417434 424 ntBASIC6.07□□□□□ -1.44
NKX3-1Q99801 AL583805.2-201ENST00000418571 486 ntTSL 5 BASIC6.07□□□□□ -1.44
NKX3-1Q99801 CD33-203ENST00000421133 1023 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
NKX3-1Q99801 MIR181A2HG-201ENST00000429139 662 ntTSL 2 BASIC6.07□□□□□ -1.44
NKX3-1Q99801 AC091390.2-201ENST00000432573 374 ntBASIC6.07□□□□□ -1.44
NKX3-1Q99801 LINC01798-204ENST00000433396 682 ntTSL 3 BASIC6.07□□□□□ -1.44
NKX3-1Q99801 CR391992.1-201ENST00000438601 394 ntBASIC6.07□□□□□ -1.44
NKX3-1Q99801 PMS2P9-201ENST00000441237 515 ntBASIC6.07□□□□□ -1.44
NKX3-1Q99801 AL929410.2-201ENST00000451170 189 ntBASIC6.07□□□□□ -1.44
NKX3-1Q99801 AC093799.1-201ENST00000452411 499 ntBASIC6.07□□□□□ -1.44
NKX3-1Q99801 MIR4435-2HG-214ENST00000453478 560 ntTSL 4 BASIC6.07□□□□□ -1.44
NKX3-1Q99801 TRBV5-4-201ENST00000454561 544 ntAPPRIS P1 BASIC6.07□□□□□ -1.44
NKX3-1Q99801 QTRT2-209ENST00000479882 1196 ntTSL 2 BASIC6.07□□□□□ -1.44
NKX3-1Q99801 RN7SL152P-201ENST00000484176 298 ntBASIC6.07□□□□□ -1.44
NKX3-1Q99801 AC008770.1-202ENST00000495324 516 ntTSL 2 BASIC6.07□□□□□ -1.44
NKX3-1Q99801 AC010445.1-201ENST00000507674 440 ntTSL 5 BASIC6.07□□□□□ -1.44
NKX3-1Q99801 C4orf19-203ENST00000508175 828 ntTSL 3 BASIC6.07□□□□□ -1.44
NKX3-1Q99801 AC022075.2-201ENST00000535911 562 ntTSL 4 BASIC6.07□□□□□ -1.44
NKX3-1Q99801 AC008013.2-201ENST00000537555 348 ntTSL 5 BASIC6.07□□□□□ -1.44
NKX3-1Q99801 LINC00640-201ENST00000554409 498 ntTSL 3 BASIC6.07□□□□□ -1.44
NKX3-1Q99801 ZNF431-206ENST00000599296 586 ntTSL 5 BASIC6.07□□□□□ -1.44
NKX3-1Q99801 AC097376.1-201ENST00000602907 997 ntBASIC6.07□□□□□ -1.44
NKX3-1Q99801 AP002345.2-201ENST00000609961 904 ntBASIC6.07□□□□□ -1.44
NKX3-1Q99801 AC004943.1-203ENST00000624370 1074 ntBASIC6.07□□□□□ -1.44
NKX3-1Q99801 AL136359.1-201ENST00000625090 565 ntTSL 2 BASIC6.07□□□□□ -1.44
NKX3-1Q99801 SKIV2L-216ENST00000628157 210 ntTSL 5 BASIC6.07□□□□□ -1.44
NKX3-1Q99801 LINC00466-206ENST00000634576 1279 ntTSL 5 BASIC6.07□□□□□ -1.44
NKX3-1Q99801 MED21-201ENST00000282892 1753 ntAPPRIS P1 TSL 1 (best) BASIC6.07□□□□□ -1.44
NKX3-1Q99801 AP002833.3-201ENST00000625075 2265 ntBASIC6.07□□□□□ -1.44
NKX3-1Q99801 PUM2-201ENST00000319801 6002 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
NKX3-1Q99801 TTLL4-210ENST00000442769 3971 ntTSL 5 BASIC6.07□□□□□ -1.44
NKX3-1Q99801 SERPINA11-201ENST00000334708 1476 ntAPPRIS P1 TSL 1 (best) BASIC6.07□□□□□ -1.44
NKX3-1Q99801 DPYD-202ENST00000370192 4412 ntAPPRIS P1 TSL 1 (best) BASIC6.07□□□□□ -1.44
NKX3-1Q99801 ST6GALNAC3-201ENST00000328299 6861 ntAPPRIS P1 TSL 1 (best) BASIC6.07□□□□□ -1.44
NKX3-1Q99801 HEMK1-203ENST00000434410 17064 ntAPPRIS P1 TSL 2 BASIC6.07□□□□□ -1.44
NKX3-1Q99801 TOR1AIP2-201ENST00000367612 7905 ntAPPRIS P1 TSL 1 (best) BASIC6.07□□□□□ -1.44
NKX3-1Q99801 ODF2L-201ENST00000294678 4267 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
NKX3-1Q99801 MTND5P12-201ENST00000502851 1449 ntBASIC6.07□□□□□ -1.44
NKX3-1Q99801 FBXO3-209ENST00000531080 1448 ntTSL 2 BASIC6.07□□□□□ -1.44
NKX3-1Q99801 OR7D4-202ENST00000641244 4968 ntAPPRIS P1 BASIC6.07□□□□□ -1.44
NKX3-1Q99801 AC009812.3-201ENST00000523871 3766 ntTSL 4 BASIC6.07□□□□□ -1.44
NKX3-1Q99801 ALS2CR12-207ENST00000439709 1626 ntAPPRIS ALT2 TSL 2 BASIC6.07□□□□□ -1.44
NKX3-1Q99801 CBWD6-203ENST00000456520 1608 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
NKX3-1Q99801 ASNSP6-201ENST00000592770 1618 ntBASIC6.07□□□□□ -1.44
NKX3-1Q99801 NR1H5P-201ENST00000452683 1377 ntBASIC6.06□□□□□ -1.44
NKX3-1Q99801 IRF6-201ENST00000367021 4306 ntAPPRIS P1 TSL 1 (best) BASIC6.06□□□□□ -1.44
NKX3-1Q99801 LCOR-201ENST00000286067 4542 ntBASIC6.06□□□□□ -1.44
NKX3-1Q99801 OR2M3-202ENST00000641626 9913 ntAPPRIS P1 BASIC6.06□□□□□ -1.44
NKX3-1Q99801 LINC02092-201ENST00000455366 2472 ntTSL 1 (best) BASIC6.06□□□□□ -1.44
NKX3-1Q99801 TCF7L2-218ENST00000538897 4000 ntTSL 1 (best) BASIC6.06□□□□□ -1.44
NKX3-1Q99801 GABRR1-206ENST00000611484 3259 ntTSL 1 (best) BASIC6.06□□□□□ -1.44
NKX3-1Q99801 DAZ1-201ENST00000382510 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC6.06□□□□□ -1.44
NKX3-1Q99801 ATXN2-214ENST00000535949 3205 ntAPPRIS ALT2 TSL 1 (best) BASIC6.06□□□□□ -1.44
NKX3-1Q99801 RAET1G-201ENST00000367360 1107 ntAPPRIS P2 TSL 1 (best) BASIC6.06□□□□□ -1.44
NKX3-1Q99801 IGLV5-52-201ENST00000390289 379 ntAPPRIS P1 BASIC6.06□□□□□ -1.44
NKX3-1Q99801 CFAP70-204ENST00000394865 1222 ntTSL 5 BASIC6.06□□□□□ -1.44
NKX3-1Q99801 AP004243.1-202ENST00000398983 969 ntTSL 5 BASIC6.06□□□□□ -1.44
Retrieved 100 of 98,524 protein–RNA pairs in 79.4 ms