Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 SLC7A5P2-201ENST00000553010 536 ntBASIC17.11■□□□□ 0.33
CHMP1AQ9HD42 AP001160.3-201ENST00000601484 763 ntBASIC17.11■□□□□ 0.33
CHMP1AQ9HD42 IGHV3-30-201ENST00000603660 431 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
CHMP1AQ9HD42 ATP2A2-201ENST00000308664 4453 ntAPPRIS ALT1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CHMP1AQ9HD42 KREMEN2-202ENST00000319500 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
CHMP1AQ9HD42 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
CHMP1AQ9HD42 ATPIF1-202ENST00000465645 1855 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
CHMP1AQ9HD42 TFEB-211ENST00000420312 1996 ntTSL 5 BASIC17.11■□□□□ 0.33
CHMP1AQ9HD42 RASD1-202ENST00000579152 1404 ntTSL 2 BASIC17.11■□□□□ 0.33
CHMP1AQ9HD42 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC17.11■□□□□ 0.33
CHMP1AQ9HD42 DLEU7-201ENST00000400393 2092 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
CHMP1AQ9HD42 TCAIM-203ENST00000396078 2178 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
CHMP1AQ9HD42 CERS5-203ENST00000422340 2855 ntAPPRIS ALT2 TSL 2 BASIC17.11■□□□□ 0.33
CHMP1AQ9HD42 MON1A-203ENST00000455683 1617 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
CHMP1AQ9HD42 MFSD7-204ENST00000503156 1632 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
CHMP1AQ9HD42 LSM12-201ENST00000293406 2308 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CHMP1AQ9HD42 NEURL1B-201ENST00000369800 6424 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CHMP1AQ9HD42 RASSF7-204ENST00000431809 1745 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
CHMP1AQ9HD42 ASPG-201ENST00000546892 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
CHMP1AQ9HD42 CHRNB1-201ENST00000306071 2557 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CHMP1AQ9HD42 ZNF852-201ENST00000436261 1968 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
CHMP1AQ9HD42 GJA3-201ENST00000241125 5211 ntAPPRIS P1 TSL 3 BASIC17.1■□□□□ 0.33
CHMP1AQ9HD42 TTLL7-214ENST00000610996 2028 ntTSL 5 BASIC17.1■□□□□ 0.33
CHMP1AQ9HD42 PRPF39-201ENST00000355765 2868 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CHMP1AQ9HD42 TSPY4-201ENST00000383008 1143 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
CHMP1AQ9HD42 AC110285.4-201ENST00000572590 424 ntTSL 3 BASIC17.1■□□□□ 0.33
CHMP1AQ9HD42 AES-207ENST00000586839 942 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CHMP1AQ9HD42 ABHD1-207ENST00000621324 1078 ntTSL 5 BASIC17.1■□□□□ 0.33
CHMP1AQ9HD42 MIR2861-201ENST00000636310 90 ntBASIC17.1■□□□□ 0.33
CHMP1AQ9HD42 KLRG2-201ENST00000340940 2197 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CHMP1AQ9HD42 CLDND1-201ENST00000341181 2161 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CHMP1AQ9HD42 CERKL-204ENST00000374970 1392 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CHMP1AQ9HD42 GNB4-204ENST00000468623 1360 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
CHMP1AQ9HD42 TACC1-202ENST00000317827 7802 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
CHMP1AQ9HD42 HTR7P1-202ENST00000624664 4411 ntBASIC17.1■□□□□ 0.33
CHMP1AQ9HD42 NOXO1-202ENST00000356120 1539 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
CHMP1AQ9HD42 OTUB1-211ENST00000543004 1647 ntTSL 5 BASIC17.1■□□□□ 0.33
CHMP1AQ9HD42 GLT8D1-206ENST00000478968 1826 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CHMP1AQ9HD42 THOP1-202ENST00000395212 1877 ntTSL 2 BASIC17.1■□□□□ 0.33
CHMP1AQ9HD42 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC17.09■□□□□ 0.33
CHMP1AQ9HD42 ESPN-216ENST00000636330 4731 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
CHMP1AQ9HD42 DIAPH2-205ENST00000373061 4983 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
CHMP1AQ9HD42 ZNF286A-204ENST00000464847 5616 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CHMP1AQ9HD42 TPST2-201ENST00000338754 5697 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CHMP1AQ9HD42 CDC73-201ENST00000367435 4969 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CHMP1AQ9HD42 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC17.09■□□□□ 0.33
CHMP1AQ9HD42 FBXO33-202ENST00000554190 534 ntTSL 3 BASIC17.09■□□□□ 0.33
CHMP1AQ9HD42 AC005837.3-201ENST00000612163 286 ntBASIC17.09■□□□□ 0.33
CHMP1AQ9HD42 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
CHMP1AQ9HD42 TSSC4-203ENST00000380996 1544 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
CHMP1AQ9HD42 GORAB-201ENST00000367762 1699 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
CHMP1AQ9HD42 PHKA2-201ENST00000379942 5559 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CHMP1AQ9HD42 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
CHMP1AQ9HD42 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CHMP1AQ9HD42 MTA1-201ENST00000331320 2876 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
CHMP1AQ9HD42 HR-201ENST00000312841 5351 ntTSL 5 BASIC17.08■□□□□ 0.33
CHMP1AQ9HD42 KMT5B-203ENST00000401547 2666 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
CHMP1AQ9HD42 INTS11-202ENST00000411962 1832 ntTSL 5 BASIC17.08■□□□□ 0.33
CHMP1AQ9HD42 MAP3K6-207ENST00000493901 4309 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.32
CHMP1AQ9HD42 AK1-201ENST00000223836 736 ntTSL 3 BASIC17.08■□□□□ 0.32
CHMP1AQ9HD42 MFSD14C-201ENST00000375223 619 ntAPPRIS ALT2 TSL 5 BASIC17.08■□□□□ 0.32
CHMP1AQ9HD42 AP002748.1-201ENST00000504911 580 ntTSL 3 BASIC17.08■□□□□ 0.32
CHMP1AQ9HD42 TESC-206ENST00000541210 936 ntTSL 3 BASIC17.08■□□□□ 0.32
CHMP1AQ9HD42 PRSS22-203ENST00000571228 1037 ntTSL 2 BASIC17.08■□□□□ 0.32
CHMP1AQ9HD42 AC011511.3-201ENST00000587088 355 ntTSL 2 BASIC17.08■□□□□ 0.32
CHMP1AQ9HD42 TLX1-201ENST00000370196 2906 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
CHMP1AQ9HD42 CCDC62-204ENST00000392441 2936 ntAPPRIS ALT2 TSL 5 BASIC17.08■□□□□ 0.32
CHMP1AQ9HD42 P3H4-201ENST00000355468 2791 ntAPPRIS P2 TSL 2 BASIC17.08■□□□□ 0.32
CHMP1AQ9HD42 PHC1-212ENST00000543824 4292 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
CHMP1AQ9HD42 AP000974.1-201ENST00000623909 2387 ntBASIC17.08■□□□□ 0.32
CHMP1AQ9HD42 ZADH2-201ENST00000322342 7732 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
CHMP1AQ9HD42 MAN2A1-201ENST00000261483 4667 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
CHMP1AQ9HD42 OGG1-205ENST00000344629 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
CHMP1AQ9HD42 DOC2B-203ENST00000613549 6048 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CHMP1AQ9HD42 SMPD4-202ENST00000409031 4896 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CHMP1AQ9HD42 TBCB-201ENST00000221855 1473 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CHMP1AQ9HD42 GATA1-202ENST00000376670 1497 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CHMP1AQ9HD42 C19orf25-202ENST00000436106 2403 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CHMP1AQ9HD42 PCDHB14-202ENST00000624896 2367 ntTSL 2 BASIC17.07■□□□□ 0.32
CHMP1AQ9HD42 NDUFS3-201ENST00000263774 958 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CHMP1AQ9HD42 ACYP2-201ENST00000303536 789 ntTSL 2 BASIC17.07■□□□□ 0.32
CHMP1AQ9HD42 CRB3-202ENST00000356762 733 ntAPPRIS P4 TSL 1 (best) BASIC17.07■□□□□ 0.32
CHMP1AQ9HD42 C19orf12-205ENST00000392278 895 ntTSL 2 BASIC17.07■□□□□ 0.32
CHMP1AQ9HD42 RNF208-202ENST00000392827 1135 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
CHMP1AQ9HD42 LRRC37A17P-202ENST00000570478 572 ntTSL 4 BASIC17.07■□□□□ 0.32
CHMP1AQ9HD42 TERF1P2-201ENST00000583350 1212 ntBASIC17.07■□□□□ 0.32
CHMP1AQ9HD42 PKMYT1-204ENST00000440027 2061 ntTSL 2 BASIC17.07■□□□□ 0.32
CHMP1AQ9HD42 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
CHMP1AQ9HD42 FOXI1-202ENST00000449804 2011 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
CHMP1AQ9HD42 MBD3-207ENST00000590550 2782 ntTSL 2 BASIC17.07■□□□□ 0.32
CHMP1AQ9HD42 AC245041.2-204ENST00000610809 1962 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
CHMP1AQ9HD42 P2RY11-201ENST00000321826 1943 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CHMP1AQ9HD42 ST8SIA1-204ENST00000404299 1920 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
CHMP1AQ9HD42 PRKAR1B-212ENST00000544935 2494 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
CHMP1AQ9HD42 ING5-201ENST00000313552 5196 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
CHMP1AQ9HD42 IL11RA-201ENST00000318041 1728 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CHMP1AQ9HD42 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC17.07■□□□□ 0.32
CHMP1AQ9HD42 SH3BGRL3-201ENST00000270792 1661 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CHMP1AQ9HD42 TMSB15B-201ENST00000419165 1666 ntAPPRIS P1 TSL 2 BASIC17.07■□□□□ 0.32
CHMP1AQ9HD42 TRABD-201ENST00000303434 2329 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 62.4 ms