Protein–RNA interactions for Protein: Q86UV5

USP48, Ubiquitin carboxyl-terminal hydrolase 48, humanhuman

Predictions only

Length 1,035 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP48Q86UV5 TXNRD3-204ENST00000640433 1932 ntAPPRIS P4 TSL 1 (best) BASIC24.43■■□□□ 1.5
USP48Q86UV5 AC007743.1-203ENST00000447423 1623 ntTSL 2 BASIC24.43■■□□□ 1.5
USP48Q86UV5 ME3-212ENST00000543262 2311 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
USP48Q86UV5 PARD3-202ENST00000346874 5894 ntAPPRIS ALT2 TSL 1 (best) BASIC24.43■■□□□ 1.5
USP48Q86UV5 PARD3-203ENST00000350537 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC24.43■■□□□ 1.5
USP48Q86UV5 CTAG2-201ENST00000247306 993 ntTSL 1 (best) BASIC24.43■■□□□ 1.5
USP48Q86UV5 RNF5-203ENST00000375094 1168 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
USP48Q86UV5 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC24.43■■□□□ 1.5
USP48Q86UV5 NOXO1-202ENST00000356120 1539 ntAPPRIS P3 TSL 1 (best) BASIC24.43■■□□□ 1.5
USP48Q86UV5 KLHL35-201ENST00000376292 1500 ntTSL 1 (best) BASIC24.43■■□□□ 1.5
USP48Q86UV5 CXorf40A-204ENST00000423421 1403 ntAPPRIS P3 TSL 1 (best) BASIC24.43■■□□□ 1.5
USP48Q86UV5 TMEM125-201ENST00000432792 1850 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
USP48Q86UV5 WHAMM-201ENST00000286760 5101 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
USP48Q86UV5 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
USP48Q86UV5 TMEM98-206ENST00000579849 4434 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
USP48Q86UV5 ICAM4-201ENST00000340992 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC24.42■■□□□ 1.5
USP48Q86UV5 FAM26F-202ENST00000368605 1117 ntAPPRIS P1 TSL 5 BASIC24.42■■□□□ 1.5
USP48Q86UV5 AKIP1-206ENST00000525005 1128 ntTSL 2 BASIC24.42■■□□□ 1.5
USP48Q86UV5 AP001458.2-201ENST00000528405 577 ntAPPRIS P1 TSL 4 BASIC24.42■■□□□ 1.5
USP48Q86UV5 PDCD5-207ENST00000590247 699 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
USP48Q86UV5 PXYLP1-203ENST00000502783 2066 ntTSL 2 BASIC24.42■■□□□ 1.5
USP48Q86UV5 OLIG3-201ENST00000367734 2049 ntAPPRIS P1 BASIC24.42■■□□□ 1.5
USP48Q86UV5 ZNF821-202ENST00000425432 2000 ntAPPRIS P1 TSL 5 BASIC24.42■■□□□ 1.5
USP48Q86UV5 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC24.42■■□□□ 1.5
USP48Q86UV5 AC092667.1-201ENST00000434301 2586 ntBASIC24.42■■□□□ 1.5
USP48Q86UV5 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
USP48Q86UV5 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC24.42■■□□□ 1.5
USP48Q86UV5 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
USP48Q86UV5 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC24.41■■□□□ 1.5
USP48Q86UV5 WWTR1-AS1-202ENST00000479752 1700 ntTSL 1 (best) BASIC24.41■■□□□ 1.5
USP48Q86UV5 FGF17-202ENST00000518533 1706 ntTSL 1 (best) BASIC24.41■■□□□ 1.5
USP48Q86UV5 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC24.41■■□□□ 1.5
USP48Q86UV5 ILKAP-201ENST00000254654 1490 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
USP48Q86UV5 IFI6-201ENST00000339145 822 ntAPPRIS P4 TSL 2 BASIC24.41■■□□□ 1.5
USP48Q86UV5 GDAP1L1-202ENST00000372952 722 ntTSL 5 BASIC24.41■■□□□ 1.5
USP48Q86UV5 AL355355.2-201ENST00000442321 338 ntBASIC24.41■■□□□ 1.5
USP48Q86UV5 AC019257.1-201ENST00000517676 557 ntTSL 5 BASIC24.41■■□□□ 1.5
USP48Q86UV5 GRAP-204ENST00000573099 846 ntTSL 3 BASIC24.41■■□□□ 1.5
USP48Q86UV5 AC007993.2-201ENST00000592842 521 ntTSL 4 BASIC24.41■■□□□ 1.5
USP48Q86UV5 AL590627.2-201ENST00000637510 144 ntTSL 5 BASIC24.41■■□□□ 1.5
USP48Q86UV5 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC24.41■■□□□ 1.5
USP48Q86UV5 AC116050.2-201ENST00000612102 1779 ntBASIC24.41■■□□□ 1.5
USP48Q86UV5 STX5-203ENST00000394690 1568 ntTSL 5 BASIC24.41■■□□□ 1.5
USP48Q86UV5 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC24.41■■□□□ 1.5
USP48Q86UV5 C19orf35-201ENST00000342063 2574 ntAPPRIS P1 TSL 2 BASIC24.41■■□□□ 1.5
USP48Q86UV5 POMGNT1-201ENST00000371984 2728 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
USP48Q86UV5 LMAN1L-202ENST00000379709 1699 ntTSL 1 (best) BASIC24.4■■□□□ 1.5
USP48Q86UV5 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC24.4■■□□□ 1.5
USP48Q86UV5 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
USP48Q86UV5 TMPRSS5-208ENST00000544476 1320 ntTSL 2 BASIC24.4■■□□□ 1.5
USP48Q86UV5 CENPU-201ENST00000281453 1998 ntAPPRIS P2 TSL 1 (best) BASIC24.4■■□□□ 1.5
USP48Q86UV5 GPRIN2-202ENST00000374317 1966 ntAPPRIS P1 TSL 3 BASIC24.4■■□□□ 1.5
USP48Q86UV5 DBNDD2-206ENST00000372720 1481 ntTSL 1 (best) BASIC24.4■■□□□ 1.5
USP48Q86UV5 ALG1-201ENST00000262374 2132 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
USP48Q86UV5 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
USP48Q86UV5 SSTR3-202ENST00000617123 1781 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
USP48Q86UV5 RAP1B-203ENST00000378985 1017 ntTSL 2 BASIC24.4■■□□□ 1.5
USP48Q86UV5 METTL21A-204ENST00000425132 869 ntTSL 2 BASIC24.4■■□□□ 1.5
USP48Q86UV5 RAP1B-221ENST00000540209 1264 ntTSL 2 BASIC24.4■■□□□ 1.5
USP48Q86UV5 BRWD1-AS2-201ENST00000603064 1028 ntBASIC24.4■■□□□ 1.5
USP48Q86UV5 AC092865.7-201ENST00000641832 219 ntBASIC24.4■■□□□ 1.5
USP48Q86UV5 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC24.4■■□□□ 1.5
USP48Q86UV5 PARN-205ENST00000539279 1557 ntTSL 2 BASIC24.4■■□□□ 1.5
USP48Q86UV5 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC24.4■■□□□ 1.5
USP48Q86UV5 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC24.4■■□□□ 1.5
USP48Q86UV5 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC24.4■■□□□ 1.5
USP48Q86UV5 AC133555.3-201ENST00000549950 1693 ntAPPRIS P5 TSL 5 BASIC24.4■■□□□ 1.5
USP48Q86UV5 AC106782.1-201ENST00000550538 1693 ntAPPRIS P5 TSL 5 BASIC24.4■■□□□ 1.5
USP48Q86UV5 GRINA-202ENST00000395068 1814 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
USP48Q86UV5 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC24.4■■□□□ 1.5
USP48Q86UV5 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC24.4■■□□□ 1.5
USP48Q86UV5 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC24.39■■□□□ 1.5
USP48Q86UV5 IRX4-208ENST00000622814 2398 ntTSL 1 (best) BASIC24.39■■□□□ 1.5
USP48Q86UV5 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC24.39■■□□□ 1.5
USP48Q86UV5 BAG4-202ENST00000432471 1943 ntTSL 1 (best) BASIC24.39■■□□□ 1.5
USP48Q86UV5 SMPDL3A-203ENST00000539041 1755 ntTSL 2 BASIC24.39■■□□□ 1.5
USP48Q86UV5 BZW1-209ENST00000452790 1473 ntTSL 2 BASIC24.39■■□□□ 1.5
USP48Q86UV5 AC008687.4-201ENST00000637680 1485 ntAPPRIS P1 TSL 5 BASIC24.39■■□□□ 1.5
USP48Q86UV5 TUBGCP3-204ENST00000464139 2461 ntTSL 1 (best) BASIC24.39■■□□□ 1.5
USP48Q86UV5 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC24.39■■□□□ 1.5
USP48Q86UV5 FMR1-201ENST00000218200 4333 ntAPPRIS ALT2 TSL 1 (best) BASIC24.39■■□□□ 1.5
USP48Q86UV5 JAKMIP1-201ENST00000282924 2585 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.5
USP48Q86UV5 LRR1-202ENST00000318317 957 ntTSL 1 (best) BASIC24.39■■□□□ 1.49
USP48Q86UV5 TBC1D7-201ENST00000343141 1027 ntTSL 1 (best) BASIC24.39■■□□□ 1.49
USP48Q86UV5 SNAPIN-201ENST00000368685 1030 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.49
USP48Q86UV5 AL390719.1-204ENST00000412397 1219 ntBASIC24.39■■□□□ 1.49
USP48Q86UV5 MLF2-210ENST00000542154 838 ntAPPRIS P1 TSL 5 BASIC24.39■■□□□ 1.49
USP48Q86UV5 GOSR2-208ENST00000573224 1115 ntTSL 5 BASIC24.39■■□□□ 1.49
USP48Q86UV5 DEDD2-209ENST00000598727 1037 ntTSL 1 (best) BASIC24.39■■□□□ 1.49
USP48Q86UV5 LINC01089-202ENST00000429892 1521 ntTSL 1 (best) BASIC24.39■■□□□ 1.49
USP48Q86UV5 WDSUB1-202ENST00000359774 1912 ntAPPRIS P1 TSL 5 BASIC24.39■■□□□ 1.49
USP48Q86UV5 C12orf76-203ENST00000546651 1755 ntTSL 2 BASIC24.39■■□□□ 1.49
USP48Q86UV5 FADS6-203ENST00000612771 2154 ntAPPRIS P2 TSL 1 (best) BASIC24.39■■□□□ 1.49
USP48Q86UV5 COPS7A-208ENST00000538410 1610 ntTSL 3 BASIC24.39■■□□□ 1.49
USP48Q86UV5 CYHR1-202ENST00000403000 1477 ntTSL 1 (best) BASIC24.38■■□□□ 1.49
USP48Q86UV5 LYPD1-202ENST00000397463 1891 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
USP48Q86UV5 RTP5-201ENST00000343216 2296 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
USP48Q86UV5 ACY1-207ENST00000476854 1319 ntTSL 3 BASIC24.38■■□□□ 1.49
USP48Q86UV5 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC24.38■■□□□ 1.49
USP48Q86UV5 SNCA-203ENST00000394986 1420 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
Retrieved 100 of 98,524 protein–RNA pairs in 20.3 ms