Protein–RNA interactions for Protein: Q6A162

KRT40, Keratin, type I cytoskeletal 40, humanhuman

Predictions only

Length 431 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT40Q6A162 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC23.08■■□□□ 1.29
KRT40Q6A162 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC23.08■■□□□ 1.29
KRT40Q6A162 MZB1-201ENST00000302125 825 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
KRT40Q6A162 EMC6-202ENST00000397133 762 ntAPPRIS P1 TSL 2 BASIC23.08■■□□□ 1.29
KRT40Q6A162 LINC01637-201ENST00000444039 684 ntTSL 2 BASIC23.08■■□□□ 1.29
KRT40Q6A162 NDUFB2-203ENST00000461457 559 ntTSL 3 BASIC23.08■■□□□ 1.29
KRT40Q6A162 HSD11B1L-204ENST00000411793 1362 ntTSL 1 (best) BASIC23.08■■□□□ 1.29
KRT40Q6A162 HAUS4-202ENST00000342454 1474 ntTSL 1 (best) BASIC23.08■■□□□ 1.29
KRT40Q6A162 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
KRT40Q6A162 NRXN1-226ENST00000626899 2543 ntTSL 2 BASIC23.08■■□□□ 1.28
KRT40Q6A162 RARA-201ENST00000254066 2414 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.28
KRT40Q6A162 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC23.08■■□□□ 1.28
KRT40Q6A162 PCBP3-203ENST00000400308 1911 ntTSL 1 (best) BASIC23.08■■□□□ 1.28
KRT40Q6A162 SYNC-201ENST00000373484 1824 ntAPPRIS ALT2 TSL 2 BASIC23.08■■□□□ 1.28
KRT40Q6A162 TNFRSF25-203ENST00000351959 1441 ntAPPRIS ALT2 TSL 1 (best) BASIC23.08■■□□□ 1.28
KRT40Q6A162 ETV2-202ENST00000379026 1571 ntAPPRIS ALT2 TSL 2 BASIC23.07■■□□□ 1.28
KRT40Q6A162 MIF-AS1-201ENST00000406213 1476 ntTSL 1 (best) BASIC23.07■■□□□ 1.28
KRT40Q6A162 FBL-201ENST00000221801 1160 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
KRT40Q6A162 HSD17B10-202ENST00000375298 823 ntTSL 3 BASIC23.07■■□□□ 1.28
KRT40Q6A162 C20orf196-202ENST00000378979 585 ntTSL 2 BASIC23.07■■□□□ 1.28
KRT40Q6A162 OR2A1-AS1-201ENST00000462305 773 ntBASIC23.07■■□□□ 1.28
KRT40Q6A162 AC004889.1-204ENST00000474656 773 ntTSL 3 BASIC23.07■■□□□ 1.28
KRT40Q6A162 AC080023.1-201ENST00000526906 803 ntTSL 2 BASIC23.07■■□□□ 1.28
KRT40Q6A162 ANP32AP1-202ENST00000560832 1074 ntTSL 1 (best) BASIC23.07■■□□□ 1.28
KRT40Q6A162 PLEKHJ1-205ENST00000587394 937 ntTSL 2 BASIC23.07■■□□□ 1.28
KRT40Q6A162 KDM3B-201ENST00000314358 6813 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
KRT40Q6A162 GNB1-209ENST00000610897 3145 ntAPPRIS P1 TSL 5 BASIC23.07■■□□□ 1.28
KRT40Q6A162 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC23.07■■□□□ 1.28
KRT40Q6A162 PADI2-201ENST00000375481 1607 ntTSL 1 (best) BASIC23.07■■□□□ 1.28
KRT40Q6A162 KRT8P20-201ENST00000423953 1409 ntBASIC23.07■■□□□ 1.28
KRT40Q6A162 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC23.07■■□□□ 1.28
KRT40Q6A162 PARP2-202ENST00000429687 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC23.07■■□□□ 1.28
KRT40Q6A162 MOK-225ENST00000522867 1883 ntTSL 5 BASIC23.07■■□□□ 1.28
KRT40Q6A162 AC083805.3-201ENST00000619560 1315 ntTSL 3 BASIC23.07■■□□□ 1.28
KRT40Q6A162 BEST4-201ENST00000372207 2047 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
KRT40Q6A162 BCKDK-202ENST00000287507 1907 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
KRT40Q6A162 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC23.06■■□□□ 1.28
KRT40Q6A162 LINC00471-201ENST00000313064 1282 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
KRT40Q6A162 ZNF324-202ENST00000535298 1006 ntTSL 5 BASIC23.06■■□□□ 1.28
KRT40Q6A162 FAM32A-205ENST00000589852 1168 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
KRT40Q6A162 DMPK-203ENST00000354227 1982 ntTSL 2 BASIC23.06■■□□□ 1.28
KRT40Q6A162 C18orf25-204ENST00000615553 2329 ntTSL 5 BASIC23.06■■□□□ 1.28
KRT40Q6A162 LHX3-202ENST00000371748 2365 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
KRT40Q6A162 TSSC4-207ENST00000451491 1423 ntAPPRIS P3 TSL 1 (best) BASIC23.06■■□□□ 1.28
KRT40Q6A162 EFHD2-201ENST00000375980 2419 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
KRT40Q6A162 ZGPAT-203ENST00000357119 1896 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
KRT40Q6A162 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
KRT40Q6A162 TREX2-206ENST00000370232 1864 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
KRT40Q6A162 KLF2-201ENST00000248071 2018 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
KRT40Q6A162 WIPF1-205ENST00000409415 1772 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
KRT40Q6A162 MFSD10-211ENST00000514800 1776 ntTSL 5 BASIC23.05■■□□□ 1.28
KRT40Q6A162 UBC-201ENST00000339647 2688 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
KRT40Q6A162 LIPT2-201ENST00000310109 1018 ntAPPRIS P1 TSL 2 BASIC23.05■■□□□ 1.28
KRT40Q6A162 NRXN2-203ENST00000377551 6373 ntAPPRIS P3 TSL 1 (best) BASIC23.05■■□□□ 1.28
KRT40Q6A162 SEC61A2-206ENST00000379051 707 ntTSL 3 BASIC23.05■■□□□ 1.28
KRT40Q6A162 ESRRAP1-201ENST00000400596 1257 ntBASIC23.05■■□□□ 1.28
KRT40Q6A162 RPS2P4-201ENST00000476944 856 ntBASIC23.05■■□□□ 1.28
KRT40Q6A162 AC100835.1-201ENST00000565737 498 ntTSL 5 BASIC23.05■■□□□ 1.28
KRT40Q6A162 AC125437.2-201ENST00000625180 2167 ntBASIC23.05■■□□□ 1.28
KRT40Q6A162 SPESP1-201ENST00000310673 1431 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
KRT40Q6A162 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
KRT40Q6A162 KIAA1456-201ENST00000400069 1982 ntTSL 2 BASIC23.05■■□□□ 1.28
KRT40Q6A162 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
KRT40Q6A162 MAG-203ENST00000537831 2341 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
KRT40Q6A162 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC23.04■■□□□ 1.28
KRT40Q6A162 RALGPS1-204ENST00000373436 1667 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
KRT40Q6A162 MEA1-201ENST00000244711 1089 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
KRT40Q6A162 PPP1CA-202ENST00000358239 1054 ntTSL 2 BASIC23.04■■□□□ 1.28
KRT40Q6A162 KRTAP5-8-201ENST00000398534 1183 ntAPPRIS P1 BASIC23.04■■□□□ 1.28
KRT40Q6A162 CCDC103-202ENST00000410006 921 ntAPPRIS P1 TSL 2 BASIC23.04■■□□□ 1.28
KRT40Q6A162 GNAS-AS1-201ENST00000424094 1156 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
KRT40Q6A162 SERP1-205ENST00000487153 657 ntTSL 4 BASIC23.04■■□□□ 1.28
KRT40Q6A162 SMIM20-201ENST00000506197 935 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
KRT40Q6A162 AC023632.3-201ENST00000521633 145 ntBASIC23.04■■□□□ 1.28
KRT40Q6A162 RRAS2-203ENST00000526063 970 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
KRT40Q6A162 RRAS2-208ENST00000532814 982 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
KRT40Q6A162 HAGHL-213ENST00000564545 663 ntTSL 3 BASIC23.04■■□□□ 1.28
KRT40Q6A162 YIF1B-213ENST00000591755 1077 ntTSL 2 BASIC23.04■■□□□ 1.28
KRT40Q6A162 AL772284.2-201ENST00000620151 1147 ntAPPRIS P1 TSL 5 BASIC23.04■■□□□ 1.28
KRT40Q6A162 AL160396.2-202ENST00000636692 566 ntAPPRIS ALT2 TSL 5 BASIC23.04■■□□□ 1.28
KRT40Q6A162 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
KRT40Q6A162 DMWD-202ENST00000377735 3292 ntAPPRIS ALT2 TSL 5 BASIC23.04■■□□□ 1.28
KRT40Q6A162 SOCS2-210ENST00000551556 1716 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
KRT40Q6A162 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC23.04■■□□□ 1.28
KRT40Q6A162 ESX1-201ENST00000372588 1495 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
KRT40Q6A162 RAB11B-201ENST00000328024 1751 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
KRT40Q6A162 DMAP1-202ENST00000361745 1545 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
KRT40Q6A162 TOR2A-203ENST00000373284 1523 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
KRT40Q6A162 SH3RF3-201ENST00000309415 5803 ntAPPRIS P1 TSL 5 BASIC23.03■■□□□ 1.28
KRT40Q6A162 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
KRT40Q6A162 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC23.03■■□□□ 1.28
KRT40Q6A162 RGMA-208ENST00000556658 1889 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
KRT40Q6A162 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC23.03■■□□□ 1.28
KRT40Q6A162 ASPHD1-201ENST00000308748 1584 ntAPPRIS P2 TSL 1 (best) BASIC23.03■■□□□ 1.28
KRT40Q6A162 GTF2A2-203ENST00000396061 758 ntAPPRIS P1 TSL 2 BASIC23.03■■□□□ 1.28
KRT40Q6A162 SERPINH1P1-201ENST00000419794 1249 ntBASIC23.03■■□□□ 1.28
KRT40Q6A162 ADM-205ENST00000528544 586 ntTSL 2 BASIC23.03■■□□□ 1.28
KRT40Q6A162 AC083880.1-201ENST00000608266 535 ntBASIC23.03■■□□□ 1.28
KRT40Q6A162 AC092118.2-201ENST00000613495 667 ntBASIC23.03■■□□□ 1.28
KRT40Q6A162 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC23.03■■□□□ 1.28
Retrieved 100 of 98,524 protein–RNA pairs in 17.4 ms