Protein–RNA interactions for Protein: Q05787

HRD3, ERAD-associated E3 ubiquitin-protein ligase component HRD3, yeastyeast

Predictions only

Length 833 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
HRD3Q05787 NNF2YGR089W 2811 nt0.85□□□□□ -2.27
HRD3Q05787 RPM2YML091C 3609 nt0.85□□□□□ -2.27
HRD3Q05787 CSE1YGL238W 2883 nt0.84□□□□□ -2.28
HRD3Q05787 RCO1YMR075W 2055 nt0.84□□□□□ -2.28
HRD3Q05787 YGL041C-BYGL041C-B 183 nt0.81□□□□□ -2.28
HRD3Q05787 YMR326CYMR326C 309 nt0.81□□□□□ -2.28
HRD3Q05787 YOR192C-BYOR192C-B 5313 nt0.81□□□□□ -2.28
HRD3Q05787 YMR160WYMR160W 2451 nt0.77□□□□□ -2.29
HRD3Q05787 YBR196C-AYBR196C-A 150 nt0.76□□□□□ -2.29
HRD3Q05787 SEC10YLR166C 2616 nt0.75□□□□□ -2.29
HRD3Q05787 PET111YMR257C 2403 nt0.75□□□□□ -2.29
HRD3Q05787 NIP1YMR309C 2439 nt0.75□□□□□ -2.29
HRD3Q05787 tT(AGU)BtT(AGU)B 73 nt0.75□□□□□ -2.29
HRD3Q05787 tT(AGU)CtT(AGU)C 73 nt0.75□□□□□ -2.29
HRD3Q05787 tT(AGU)DtT(AGU)D 73 nt0.75□□□□□ -2.29
HRD3Q05787 tT(AGU)HtT(AGU)H 73 nt0.75□□□□□ -2.29
HRD3Q05787 tT(AGU)I1tT(AGU)I1 73 nt0.75□□□□□ -2.29
HRD3Q05787 tT(AGU)I2tT(AGU)I2 73 nt0.75□□□□□ -2.29
HRD3Q05787 tT(AGU)JtT(AGU)J 73 nt0.75□□□□□ -2.29
HRD3Q05787 tT(AGU)N1tT(AGU)N1 73 nt0.75□□□□□ -2.29
HRD3Q05787 tT(AGU)N2tT(AGU)N2 73 nt0.75□□□□□ -2.29
HRD3Q05787 tT(AGU)O1tT(AGU)O1 73 nt0.75□□□□□ -2.29
HRD3Q05787 tT(AGU)O2tT(AGU)O2 73 nt0.75□□□□□ -2.29
HRD3Q05787 YOL014WYOL014W 375 nt0.75□□□□□ -2.29
HRD3Q05787 YHR217CYHR217C 462 nt0.74□□□□□ -2.29
HRD3Q05787 snR69snR69 101 nt0.71□□□□□ -2.3
HRD3Q05787 LTE1YAL024C 4308 nt0.71□□□□□ -2.3
HRD3Q05787 RPS26AYGL189C 360 nt0.7□□□□□ -2.3
HRD3Q05787 EST1YLR233C 2100 nt0.7□□□□□ -2.3
HRD3Q05787 YDR371C-AYDR371C-A 105 nt0.69□□□□□ -2.3
HRD3Q05787 SBH1YER087C-B 249 nt0.69□□□□□ -2.3
HRD3Q05787 YKL145W-AYKL145W-A 93 nt0.69□□□□□ -2.3
HRD3Q05787 BUL2YML111W 2763 nt0.69□□□□□ -2.3
HRD3Q05787 snR81snR81 201 nt0.68□□□□□ -2.3
HRD3Q05787 tD(GUC)QtD(GUC)Q 75 nt0.67□□□□□ -2.3
HRD3Q05787 YAL037C-AYAL037C-A 93 nt0.67□□□□□ -2.3
HRD3Q05787 YOL083C-AYOL083C-A 141 nt0.67□□□□□ -2.3
HRD3Q05787 YPR159C-AYPR159C-A 102 nt0.67□□□□□ -2.3
HRD3Q05787 ORC3YLL004W 1851 nt0.65□□□□□ -2.31
HRD3Q05787 YJL077W-AYJL077W-A 87 nt0.64□□□□□ -2.31
HRD3Q05787 YLR286W-AYLR286W-A 135 nt0.64□□□□□ -2.31
HRD3Q05787 RDS3YPR094W 324 nt0.63□□□□□ -2.31
HRD3Q05787 MLP1YKR095W 5628 nt0.62□□□□□ -2.31
HRD3Q05787 YMR272W-AYMR272W-A 114 nt0.59□□□□□ -2.31
HRD3Q05787 YDL159C-BYDL159C-B 177 nt0.58□□□□□ -2.32
HRD3Q05787 tQ(UUG)QtQ(UUG)Q 76 nt0.58□□□□□ -2.32
HRD3Q05787 YBL071C-BYBL071C-B 99 nt0.58□□□□□ -2.32
HRD3Q05787 UTP10YJL109C 5310 nt0.58□□□□□ -2.32
HRD3Q05787 YDL247W-AYDL247W-A 75 nt0.57□□□□□ -2.32
HRD3Q05787 YLR299C-AYLR299C-A 93 nt0.56□□□□□ -2.32
HRD3Q05787 AI1Q0050 2505 nt0.55□□□□□ -2.32
HRD3Q05787 tS(GCU)Q1tS(GCU)Q1 86 nt0.55□□□□□ -2.32
HRD3Q05787 FMP27YLR454W 7887 nt0.54□□□□□ -2.32
HRD3Q05787 YPL060C-AYPL060C-A 3315 nt0.53□□□□□ -2.32
HRD3Q05787 YBL100W-CYBL100W-C 120 nt0.51□□□□□ -2.33
HRD3Q05787 YBL100W-BYBL100W-B 5313 nt0.51□□□□□ -2.33
HRD3Q05787 YOL164W-AYOL164W-A 183 nt0.49□□□□□ -2.33
HRD3Q05787 IQG1YPL242C 4488 nt0.48□□□□□ -2.33
HRD3Q05787 YOR186C-AYOR186C-A 210 nt0.47□□□□□ -2.33
HRD3Q05787 THO2YNL139C 4794 nt0.45□□□□□ -2.34
HRD3Q05787 snR62snR62 100 nt0.44□□□□□ -2.34
HRD3Q05787 YGR240C-AYGR240C-A 201 nt0.44□□□□□ -2.34
HRD3Q05787 snR50snR50 90 nt0.44□□□□□ -2.34
HRD3Q05787 YNL054W-BYNL054W-B 5250 nt0.44□□□□□ -2.34
HRD3Q05787 YER090C-AYER090C-A 90 nt0.42□□□□□ -2.34
HRD3Q05787 YML054C-AYML054C-A 159 nt0.41□□□□□ -2.34
HRD3Q05787 snR47snR47 99 nt0.41□□□□□ -2.34
HRD3Q05787 YLL066W-BYLL066W-B 171 nt0.4□□□□□ -2.35
HRD3Q05787 YHR180C-BYHR180C-B 105 nt0.39□□□□□ -2.35
HRD3Q05787 snR45snR45 172 nt0.38□□□□□ -2.35
HRD3Q05787 YDR034C-AYDR034C-A 177 nt0.36□□□□□ -2.35
HRD3Q05787 MLP2YIL149C 5040 nt0.36□□□□□ -2.35
HRD3Q05787 YER078W-AYER078W-A 165 nt0.35□□□□□ -2.35
HRD3Q05787 ESP1YGR098C 4893 nt0.32□□□□□ -2.36
HRD3Q05787 snR67snR67 82 nt0.3□□□□□ -2.36
HRD3Q05787 YOL013W-AYOL013W-A 192 nt0.27□□□□□ -2.37
HRD3Q05787 SOV1YMR066W 2697 nt0.26□□□□□ -2.37
HRD3Q05787 RPL41AYDL184C 78 nt0.26□□□□□ -2.37
HRD3Q05787 YBR109W-AYBR109W-A 225 nt0.25□□□□□ -2.37
HRD3Q05787 YBR296C-AYBR296C-A 120 nt0.24□□□□□ -2.37
HRD3Q05787 snR128snR128 126 nt0.22□□□□□ -2.37
HRD3Q05787 YML100W-AYML100W-A 174 nt0.19□□□□□ -2.38
HRD3Q05787 YKL225WYKL225W 348 nt0.15□□□□□ -2.39
HRD3Q05787 snR38snR38 95 nt0.14□□□□□ -2.39
HRD3Q05787 snR64snR64 101 nt0.08□□□□□ -2.4
HRD3Q05787 SKI7YOR076C 2244 nt0.07□□□□□ -2.4
HRD3Q05787 PAU9YBL108C-A 129 nt0.06□□□□□ -2.4
HRD3Q05787 YKL106C-AYKL106C-A 120 nt-0.06□□□□□ -2.42
HRD3Q05787 snR53snR53 91 nt-0.07□□□□□ -2.42
HRD3Q05787 SBH2YER019C-A 267 nt-0.1□□□□□ -2.43
HRD3Q05787 tA(UGC)QtA(UGC)Q 76 nt-0.12□□□□□ -2.43
HRD3Q05787 YDL159W-AYDL159W-A 132 nt-0.14□□□□□ -2.43
HRD3Q05787 YGR122C-AYGR122C-A 129 nt-0.17□□□□□ -2.44
HRD3Q05787 YOR376W-AYOR376W-A 156 nt-0.19□□□□□ -2.44
HRD3Q05787 YJL113WYJL113W 4647 nt-0.28□□□□□ -2.45
HRD3Q05787 YOR316C-AYOR316C-A 210 nt-0.29□□□□□ -2.46
HRD3Q05787 snR161snR161 161 nt-0.29□□□□□ -2.46
HRD3Q05787 YDL114W-AYDL114W-A 114 nt-0.34□□□□□ -2.46
HRD3Q05787 YLR149C-AYLR149C-A 87 nt-0.41□□□□□ -2.48
HRD3Q05787 snR77snR77 88 nt-0.42□□□□□ -2.48
Retrieved 100 of 7,029 protein–RNA pairs in 12.1 ms