Protein–RNA interactions for Protein: Q03834

MSH6, DNA mismatch repair protein MSH6, yeastyeast

Predictions only

Length 1,242 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
MSH6Q03834 YDL159C-BYDL159C-B 177 nt1.46□□□□□ -2.18
MSH6Q03834 YER078W-AYER078W-A 165 nt1.46□□□□□ -2.18
MSH6Q03834 YDL159W-AYDL159W-A 132 nt1.45□□□□□ -2.18
MSH6Q03834 CSE1YGL238W 2883 nt1.43□□□□□ -2.18
MSH6Q03834 YML054C-AYML054C-A 159 nt1.43□□□□□ -2.18
MSH6Q03834 SPT7YBR081C 3999 nt1.42□□□□□ -2.18
MSH6Q03834 YNL054W-BYNL054W-B 5250 nt1.4□□□□□ -2.19
MSH6Q03834 RDS3YPR094W 324 nt1.39□□□□□ -2.19
MSH6Q03834 NIP1YMR309C 2439 nt1.38□□□□□ -2.19
MSH6Q03834 RPL41AYDL184C 78 nt1.38□□□□□ -2.19
MSH6Q03834 snR75snR75 89 nt1.37□□□□□ -2.19
MSH6Q03834 BUD3YCL014W 4911 nt1.36□□□□□ -2.19
MSH6Q03834 YHR180C-BYHR180C-B 105 nt1.36□□□□□ -2.19
MSH6Q03834 YLL006W-AYLL006W-A 177 nt1.36□□□□□ -2.19
MSH6Q03834 HUG1YML058W-A 207 nt1.36□□□□□ -2.19
MSH6Q03834 YBR296C-AYBR296C-A 120 nt1.36□□□□□ -2.19
MSH6Q03834 MYO1YHR023W 5787 nt1.36□□□□□ -2.19
MSH6Q03834 YGR130CYGR130C 2451 nt1.34□□□□□ -2.19
MSH6Q03834 tH(GUG)E1tH(GUG)E1 72 nt1.34□□□□□ -2.19
MSH6Q03834 tH(GUG)E2tH(GUG)E2 72 nt1.34□□□□□ -2.19
MSH6Q03834 tH(GUG)G1tH(GUG)G1 72 nt1.34□□□□□ -2.19
MSH6Q03834 tH(GUG)G2tH(GUG)G2 72 nt1.34□□□□□ -2.19
MSH6Q03834 tH(GUG)HtH(GUG)H 72 nt1.34□□□□□ -2.19
MSH6Q03834 tH(GUG)KtH(GUG)K 72 nt1.34□□□□□ -2.19
MSH6Q03834 tH(GUG)MtH(GUG)M 72 nt1.34□□□□□ -2.19
MSH6Q03834 IML1YJR138W 4755 nt1.33□□□□□ -2.2
MSH6Q03834 SKI7YOR076C 2244 nt1.31□□□□□ -2.2
MSH6Q03834 PAU12YGR294W 363 nt1.3□□□□□ -2.2
MSH6Q03834 YJR029WYJR029W 5268 nt1.3□□□□□ -2.2
MSH6Q03834 YPR137C-BYPR137C-B 5268 nt1.3□□□□□ -2.2
MSH6Q03834 YGR122C-AYGR122C-A 129 nt1.29□□□□□ -2.2
MSH6Q03834 BUL2YML111W 2763 nt1.28□□□□□ -2.2
MSH6Q03834 YJL077W-AYJL077W-A 87 nt1.26□□□□□ -2.21
MSH6Q03834 RKR1YMR247C 4689 nt1.25□□□□□ -2.21
MSH6Q03834 SIP4YJL089W 2490 nt1.25□□□□□ -2.21
MSH6Q03834 tV(UAC)BtV(UAC)B 74 nt1.21□□□□□ -2.22
MSH6Q03834 tV(UAC)DtV(UAC)D 74 nt1.21□□□□□ -2.22
MSH6Q03834 YOR192C-BYOR192C-B 5313 nt1.19□□□□□ -2.22
MSH6Q03834 tQ(UUG)QtQ(UUG)Q 76 nt1.17□□□□□ -2.22
MSH6Q03834 SCC2YDR180W 4482 nt1.16□□□□□ -2.22
MSH6Q03834 YER090C-AYER090C-A 90 nt1.15□□□□□ -2.23
MSH6Q03834 BEM2YER155C 6504 nt1.14□□□□□ -2.23
MSH6Q03834 VAM6YDL077C 3150 nt1.13□□□□□ -2.23
MSH6Q03834 PET111YMR257C 2403 nt1.13□□□□□ -2.23
MSH6Q03834 YPR117WYPR117W 7470 nt1.1□□□□□ -2.23
MSH6Q03834 DOP1YDR141C 5097 nt1.09□□□□□ -2.24
MSH6Q03834 EMT1tM(CAU)D 73 nt1.04□□□□□ -2.24
MSH6Q03834 EMT5tM(CAU)J1 73 nt1.04□□□□□ -2.24
MSH6Q03834 EMT3tM(CAU)J2 73 nt1.04□□□□□ -2.24
MSH6Q03834 EMT4tM(CAU)M 73 nt1.04□□□□□ -2.24
MSH6Q03834 EMT2tM(CAU)O2 73 nt1.04□□□□□ -2.24
MSH6Q03834 snR67snR67 82 nt0.99□□□□□ -2.25
MSH6Q03834 PAU24YBR301W 363 nt0.98□□□□□ -2.25
MSH6Q03834 LTE1YAL024C 4308 nt0.97□□□□□ -2.25
MSH6Q03834 YMR160WYMR160W 2451 nt0.93□□□□□ -2.26
MSH6Q03834 YBL100W-BYBL100W-B 5313 nt0.93□□□□□ -2.26
MSH6Q03834 tV(UAC)QtV(UAC)Q 76 nt0.9□□□□□ -2.27
MSH6Q03834 YDL114W-AYDL114W-A 114 nt0.88□□□□□ -2.27
MSH6Q03834 YKL106C-AYKL106C-A 120 nt0.85□□□□□ -2.27
MSH6Q03834 YOR376W-AYOR376W-A 156 nt0.82□□□□□ -2.28
MSH6Q03834 MLP1YKR095W 5628 nt0.8□□□□□ -2.28
MSH6Q03834 IQG1YPL242C 4488 nt0.78□□□□□ -2.28
MSH6Q03834 YPR159C-AYPR159C-A 102 nt0.77□□□□□ -2.29
MSH6Q03834 MLP2YIL149C 5040 nt0.76□□□□□ -2.29
MSH6Q03834 UTP20YBL004W 7482 nt0.74□□□□□ -2.29
MSH6Q03834 UTP10YJL109C 5310 nt0.73□□□□□ -2.29
MSH6Q03834 tT(AGU)BtT(AGU)B 73 nt0.72□□□□□ -2.29
MSH6Q03834 tT(AGU)CtT(AGU)C 73 nt0.72□□□□□ -2.29
MSH6Q03834 tT(AGU)DtT(AGU)D 73 nt0.72□□□□□ -2.29
MSH6Q03834 tT(AGU)HtT(AGU)H 73 nt0.72□□□□□ -2.29
MSH6Q03834 tT(AGU)I1tT(AGU)I1 73 nt0.72□□□□□ -2.29
MSH6Q03834 tT(AGU)I2tT(AGU)I2 73 nt0.72□□□□□ -2.29
MSH6Q03834 tT(AGU)JtT(AGU)J 73 nt0.72□□□□□ -2.29
MSH6Q03834 tT(AGU)N1tT(AGU)N1 73 nt0.72□□□□□ -2.29
MSH6Q03834 tT(AGU)N2tT(AGU)N2 73 nt0.72□□□□□ -2.29
MSH6Q03834 tT(AGU)O1tT(AGU)O1 73 nt0.72□□□□□ -2.29
MSH6Q03834 tT(AGU)O2tT(AGU)O2 73 nt0.72□□□□□ -2.29
MSH6Q03834 YML100W-AYML100W-A 174 nt0.72□□□□□ -2.29
MSH6Q03834 YOR186C-AYOR186C-A 210 nt0.7□□□□□ -2.3
MSH6Q03834 YMR272W-AYMR272W-A 114 nt0.68□□□□□ -2.3
MSH6Q03834 snR40snR40 97 nt0.63□□□□□ -2.31
MSH6Q03834 SOV1YMR066W 2697 nt0.63□□□□□ -2.31
MSH6Q03834 YOR316C-AYOR316C-A 210 nt0.62□□□□□ -2.31
MSH6Q03834 tF(GAA)BtF(GAA)B 73 nt0.61□□□□□ -2.31
MSH6Q03834 tF(GAA)FtF(GAA)F 73 nt0.61□□□□□ -2.31
MSH6Q03834 tF(GAA)GtF(GAA)G 73 nt0.61□□□□□ -2.31
MSH6Q03834 tF(GAA)H1tF(GAA)H1 73 nt0.61□□□□□ -2.31
MSH6Q03834 tF(GAA)H2tF(GAA)H2 73 nt0.61□□□□□ -2.31
MSH6Q03834 tF(GAA)MtF(GAA)M 73 nt0.61□□□□□ -2.31
MSH6Q03834 tF(GAA)P1tF(GAA)P1 73 nt0.61□□□□□ -2.31
MSH6Q03834 tF(GAA)P2tF(GAA)P2 73 nt0.61□□□□□ -2.31
MSH6Q03834 snR77snR77 88 nt0.6□□□□□ -2.31
MSH6Q03834 THO2YNL139C 4794 nt0.58□□□□□ -2.32
MSH6Q03834 ESP1YGR098C 4893 nt0.58□□□□□ -2.32
MSH6Q03834 YKL145W-AYKL145W-A 93 nt0.56□□□□□ -2.32
MSH6Q03834 SBH2YER019C-A 267 nt0.52□□□□□ -2.33
MSH6Q03834 FMP27YLR454W 7887 nt0.5□□□□□ -2.33
MSH6Q03834 YOL014WYOL014W 375 nt0.47□□□□□ -2.33
MSH6Q03834 snR128snR128 126 nt0.4□□□□□ -2.35
MSH6Q03834 YOL013W-AYOL013W-A 192 nt0.34□□□□□ -2.36
Retrieved 100 of 7,029 protein–RNA pairs in 33 ms