Protein–RNA interactions for Protein: P54860

UFD2, E4 ubiquitin-protein ligase UFD2, yeastyeast

Predictions only

Length 961 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
UFD2P54860 NIP1YMR309C 2439 nt1.24□□□□□ -2.21
UFD2P54860 BUL2YML111W 2763 nt1.23□□□□□ -2.21
UFD2P54860 YBL100W-CYBL100W-C 120 nt1.23□□□□□ -2.21
UFD2P54860 BUD3YCL014W 4911 nt1.21□□□□□ -2.22
UFD2P54860 YPR117WYPR117W 7470 nt1.21□□□□□ -2.22
UFD2P54860 SCC2YDR180W 4482 nt1.21□□□□□ -2.22
UFD2P54860 NST1YNL091W 3723 nt1.2□□□□□ -2.22
UFD2P54860 YDR034C-AYDR034C-A 177 nt1.2□□□□□ -2.22
UFD2P54860 YGR240C-AYGR240C-A 201 nt1.2□□□□□ -2.22
UFD2P54860 RDS3YPR094W 324 nt1.18□□□□□ -2.22
UFD2P54860 YLR299C-AYLR299C-A 93 nt1.17□□□□□ -2.22
UFD2P54860 YOR192C-BYOR192C-B 5313 nt1.16□□□□□ -2.22
UFD2P54860 YDL159C-BYDL159C-B 177 nt1.16□□□□□ -2.22
UFD2P54860 YJL077W-AYJL077W-A 87 nt1.15□□□□□ -2.23
UFD2P54860 YJR029WYJR029W 5268 nt1.14□□□□□ -2.23
UFD2P54860 YPR137C-BYPR137C-B 5268 nt1.14□□□□□ -2.23
UFD2P54860 BEM2YER155C 6504 nt1.13□□□□□ -2.23
UFD2P54860 snR47snR47 99 nt1.12□□□□□ -2.23
UFD2P54860 PAU12YGR294W 363 nt1.11□□□□□ -2.23
UFD2P54860 VAM6YDL077C 3150 nt1.11□□□□□ -2.23
UFD2P54860 EMT1tM(CAU)D 73 nt1.09□□□□□ -2.23
UFD2P54860 EMT5tM(CAU)J1 73 nt1.09□□□□□ -2.23
UFD2P54860 EMT3tM(CAU)J2 73 nt1.09□□□□□ -2.23
UFD2P54860 EMT4tM(CAU)M 73 nt1.09□□□□□ -2.23
UFD2P54860 EMT2tM(CAU)O2 73 nt1.09□□□□□ -2.23
UFD2P54860 ORC3YLL004W 1851 nt1.09□□□□□ -2.24
UFD2P54860 YDR371C-AYDR371C-A 105 nt1.07□□□□□ -2.24
UFD2P54860 PET111YMR257C 2403 nt1.06□□□□□ -2.24
UFD2P54860 LTE1YAL024C 4308 nt1.04□□□□□ -2.24
UFD2P54860 tQ(UUG)QtQ(UUG)Q 76 nt1.03□□□□□ -2.24
UFD2P54860 PAU24YBR301W 363 nt1.03□□□□□ -2.24
UFD2P54860 MYO1YHR023W 5787 nt1.02□□□□□ -2.25
UFD2P54860 DOP1YDR141C 5097 nt0.99□□□□□ -2.25
UFD2P54860 YNL054W-BYNL054W-B 5250 nt0.99□□□□□ -2.25
UFD2P54860 YML054C-AYML054C-A 159 nt0.96□□□□□ -2.26
UFD2P54860 YHR180C-BYHR180C-B 105 nt0.94□□□□□ -2.26
UFD2P54860 YER090C-AYER090C-A 90 nt0.92□□□□□ -2.26
UFD2P54860 UTP20YBL004W 7482 nt0.9□□□□□ -2.27
UFD2P54860 YBL100W-BYBL100W-B 5313 nt0.89□□□□□ -2.27
UFD2P54860 tF(GAA)BtF(GAA)B 73 nt0.89□□□□□ -2.27
UFD2P54860 tF(GAA)FtF(GAA)F 73 nt0.89□□□□□ -2.27
UFD2P54860 tF(GAA)GtF(GAA)G 73 nt0.89□□□□□ -2.27
UFD2P54860 tF(GAA)H1tF(GAA)H1 73 nt0.89□□□□□ -2.27
UFD2P54860 tF(GAA)H2tF(GAA)H2 73 nt0.89□□□□□ -2.27
UFD2P54860 tF(GAA)MtF(GAA)M 73 nt0.89□□□□□ -2.27
UFD2P54860 tF(GAA)P1tF(GAA)P1 73 nt0.89□□□□□ -2.27
UFD2P54860 tF(GAA)P2tF(GAA)P2 73 nt0.89□□□□□ -2.27
UFD2P54860 YBR109W-AYBR109W-A 225 nt0.88□□□□□ -2.27
UFD2P54860 snR50snR50 90 nt0.88□□□□□ -2.27
UFD2P54860 MLP1YKR095W 5628 nt0.85□□□□□ -2.27
UFD2P54860 snR64snR64 101 nt0.84□□□□□ -2.27
UFD2P54860 RPL41AYDL184C 78 nt0.84□□□□□ -2.27
UFD2P54860 YKL225WYKL225W 348 nt0.83□□□□□ -2.28
UFD2P54860 tT(AGU)BtT(AGU)B 73 nt0.82□□□□□ -2.28
UFD2P54860 tT(AGU)CtT(AGU)C 73 nt0.82□□□□□ -2.28
UFD2P54860 tT(AGU)DtT(AGU)D 73 nt0.82□□□□□ -2.28
UFD2P54860 tT(AGU)HtT(AGU)H 73 nt0.82□□□□□ -2.28
UFD2P54860 tT(AGU)I1tT(AGU)I1 73 nt0.82□□□□□ -2.28
UFD2P54860 tT(AGU)I2tT(AGU)I2 73 nt0.82□□□□□ -2.28
UFD2P54860 tT(AGU)JtT(AGU)J 73 nt0.82□□□□□ -2.28
UFD2P54860 tT(AGU)N1tT(AGU)N1 73 nt0.82□□□□□ -2.28
UFD2P54860 tT(AGU)N2tT(AGU)N2 73 nt0.82□□□□□ -2.28
UFD2P54860 tT(AGU)O1tT(AGU)O1 73 nt0.82□□□□□ -2.28
UFD2P54860 tT(AGU)O2tT(AGU)O2 73 nt0.82□□□□□ -2.28
UFD2P54860 YBR296C-AYBR296C-A 120 nt0.81□□□□□ -2.28
UFD2P54860 snR53snR53 91 nt0.79□□□□□ -2.28
UFD2P54860 YMR160WYMR160W 2451 nt0.79□□□□□ -2.28
UFD2P54860 snR38snR38 95 nt0.78□□□□□ -2.28
UFD2P54860 AI1Q0050 2505 nt0.77□□□□□ -2.29
UFD2P54860 YPR159C-AYPR159C-A 102 nt0.76□□□□□ -2.29
UFD2P54860 YOL014WYOL014W 375 nt0.71□□□□□ -2.3
UFD2P54860 IQG1YPL242C 4488 nt0.7□□□□□ -2.3
UFD2P54860 UTP10YJL109C 5310 nt0.7□□□□□ -2.3
UFD2P54860 YOR186C-AYOR186C-A 210 nt0.7□□□□□ -2.3
UFD2P54860 YMR272W-AYMR272W-A 114 nt0.69□□□□□ -2.3
UFD2P54860 snR67snR67 82 nt0.68□□□□□ -2.3
UFD2P54860 YKL145W-AYKL145W-A 93 nt0.67□□□□□ -2.3
UFD2P54860 FMP27YLR454W 7887 nt0.57□□□□□ -2.32
UFD2P54860 SKI7YOR076C 2244 nt0.53□□□□□ -2.33
UFD2P54860 SOV1YMR066W 2697 nt0.51□□□□□ -2.33
UFD2P54860 YDL159W-AYDL159W-A 132 nt0.51□□□□□ -2.33
UFD2P54860 MLP2YIL149C 5040 nt0.51□□□□□ -2.33
UFD2P54860 YML100W-AYML100W-A 174 nt0.5□□□□□ -2.33
UFD2P54860 ESP1YGR098C 4893 nt0.44□□□□□ -2.34
UFD2P54860 YGR122C-AYGR122C-A 129 nt0.38□□□□□ -2.35
UFD2P54860 YOL013W-AYOL013W-A 192 nt0.38□□□□□ -2.35
UFD2P54860 THO2YNL139C 4794 nt0.36□□□□□ -2.35
UFD2P54860 snR128snR128 126 nt0.34□□□□□ -2.36
UFD2P54860 YER078W-AYER078W-A 165 nt0.33□□□□□ -2.36
UFD2P54860 YLR149C-AYLR149C-A 87 nt0.32□□□□□ -2.36
UFD2P54860 YKL106C-AYKL106C-A 120 nt0.3□□□□□ -2.36
UFD2P54860 PAU9YBL108C-A 129 nt0.16□□□□□ -2.38
UFD2P54860 YOR376W-AYOR376W-A 156 nt0.14□□□□□ -2.39
UFD2P54860 YKL096C-BYKL096C-B 150 nt0.1□□□□□ -2.39
UFD2P54860 YDL114W-AYDL114W-A 114 nt0.07□□□□□ -2.4
UFD2P54860 YOR316C-AYOR316C-A 210 nt0.03□□□□□ -2.4
UFD2P54860 tA(UGC)QtA(UGC)Q 76 nt0.02□□□□□ -2.41
UFD2P54860 tV(UAC)QtV(UAC)Q 76 nt0.01□□□□□ -2.41
UFD2P54860 SBH2YER019C-A 267 nt-0.08□□□□□ -2.42
UFD2P54860 snR77snR77 88 nt-0.12□□□□□ -2.43
Retrieved 100 of 7,029 protein–RNA pairs in 15.8 ms