Protein–RNA interactions for Protein: P53836

CAF120, CCR4-NOT transcriptional complex subunit CAF120, yeastyeast

Predictions only

Length 1,060 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
CAF120P53836 DNF3YMR162C 4971 nt1.74□□□□□ -2.13
CAF120P53836 MON2YNL297C 4911 nt1.74□□□□□ -2.13
CAF120P53836 BPH1YCR032W 6504 nt1.74□□□□□ -2.13
CAF120P53836 snR40snR40 97 nt1.73□□□□□ -2.13
CAF120P53836 FYV8YGR196C 2454 nt1.72□□□□□ -2.13
CAF120P53836 BST1YFL025C 3090 nt1.71□□□□□ -2.14
CAF120P53836 tV(UAC)QtV(UAC)Q 76 nt1.71□□□□□ -2.14
CAF120P53836 YER090C-AYER090C-A 90 nt1.7□□□□□ -2.14
CAF120P53836 SWI4YER111C 3282 nt1.7□□□□□ -2.14
CAF120P53836 FIG2YCR089W 4830 nt1.69□□□□□ -2.14
CAF120P53836 PAU24YBR301W 363 nt1.68□□□□□ -2.14
CAF120P53836 CCH1YGR217W 6120 nt1.67□□□□□ -2.14
CAF120P53836 CFT1YDR301W 4074 nt1.66□□□□□ -2.14
CAF120P53836 YLL006W-AYLL006W-A 177 nt1.66□□□□□ -2.14
CAF120P53836 NUP145YGL092W 3954 nt1.66□□□□□ -2.14
CAF120P53836 TRM732YMR259C 4263 nt1.64□□□□□ -2.15
CAF120P53836 YGR130CYGR130C 2451 nt1.64□□□□□ -2.15
CAF120P53836 VPS15YBR097W 4365 nt1.64□□□□□ -2.15
CAF120P53836 MEC1YBR136W 7107 nt1.61□□□□□ -2.15
CAF120P53836 YNL054W-BYNL054W-B 5250 nt1.61□□□□□ -2.15
CAF120P53836 CLU1YMR012W 3834 nt1.59□□□□□ -2.16
CAF120P53836 YKL106C-AYKL106C-A 120 nt1.58□□□□□ -2.16
CAF120P53836 snR67snR67 82 nt1.57□□□□□ -2.16
CAF120P53836 CDC39YCR093W 6327 nt1.56□□□□□ -2.16
CAF120P53836 BRR2YER172C 6492 nt1.56□□□□□ -2.16
CAF120P53836 NUP188YML103C 4968 nt1.55□□□□□ -2.16
CAF120P53836 LAA1YJL207C 6045 nt1.54□□□□□ -2.16
CAF120P53836 MLP2YIL149C 5040 nt1.54□□□□□ -2.16
CAF120P53836 IRA1YBR140C 9279 nt1.52□□□□□ -2.17
CAF120P53836 YMR160WYMR160W 2451 nt1.49□□□□□ -2.17
CAF120P53836 YNL284C-BYNL284C-B 5268 nt1.48□□□□□ -2.17
CAF120P53836 IML1YJR138W 4755 nt1.44□□□□□ -2.18
CAF120P53836 SPT7YBR081C 3999 nt1.44□□□□□ -2.18
CAF120P53836 HKR1YDR420W 5409 nt1.41□□□□□ -2.18
CAF120P53836 VAM6YDL077C 3150 nt1.39□□□□□ -2.19
CAF120P53836 tQ(UUG)E2tQ(UUG)E2 72 nt1.38□□□□□ -2.19
CAF120P53836 tH(GUG)E1tH(GUG)E1 72 nt1.37□□□□□ -2.19
CAF120P53836 tH(GUG)E2tH(GUG)E2 72 nt1.37□□□□□ -2.19
CAF120P53836 tH(GUG)G1tH(GUG)G1 72 nt1.37□□□□□ -2.19
CAF120P53836 tH(GUG)G2tH(GUG)G2 72 nt1.37□□□□□ -2.19
CAF120P53836 tH(GUG)HtH(GUG)H 72 nt1.37□□□□□ -2.19
CAF120P53836 tH(GUG)KtH(GUG)K 72 nt1.37□□□□□ -2.19
CAF120P53836 tH(GUG)MtH(GUG)M 72 nt1.37□□□□□ -2.19
CAF120P53836 tV(UAC)BtV(UAC)B 74 nt1.34□□□□□ -2.19
CAF120P53836 tV(UAC)DtV(UAC)D 74 nt1.34□□□□□ -2.19
CAF120P53836 YPR117WYPR117W 7470 nt1.34□□□□□ -2.2
CAF120P53836 tF(GAA)BtF(GAA)B 73 nt1.3□□□□□ -2.2
CAF120P53836 tF(GAA)FtF(GAA)F 73 nt1.3□□□□□ -2.2
CAF120P53836 tF(GAA)GtF(GAA)G 73 nt1.3□□□□□ -2.2
CAF120P53836 tF(GAA)H1tF(GAA)H1 73 nt1.3□□□□□ -2.2
CAF120P53836 tF(GAA)H2tF(GAA)H2 73 nt1.3□□□□□ -2.2
CAF120P53836 tF(GAA)MtF(GAA)M 73 nt1.3□□□□□ -2.2
CAF120P53836 tF(GAA)P1tF(GAA)P1 73 nt1.3□□□□□ -2.2
CAF120P53836 tF(GAA)P2tF(GAA)P2 73 nt1.3□□□□□ -2.2
CAF120P53836 snR77snR77 88 nt1.29□□□□□ -2.2
CAF120P53836 YOR192C-BYOR192C-B 5313 nt1.26□□□□□ -2.21
CAF120P53836 MYO1YHR023W 5787 nt1.26□□□□□ -2.21
CAF120P53836 YOR316C-AYOR316C-A 210 nt1.25□□□□□ -2.21
CAF120P53836 UTP20YBL004W 7482 nt1.2□□□□□ -2.22
CAF120P53836 DOP1YDR141C 5097 nt1.18□□□□□ -2.22
CAF120P53836 SOV1YMR066W 2697 nt1.16□□□□□ -2.22
CAF120P53836 RKR1YMR247C 4689 nt1.16□□□□□ -2.22
CAF120P53836 SBH2YER019C-A 267 nt1.15□□□□□ -2.23
CAF120P53836 YOL014WYOL014W 375 nt1.15□□□□□ -2.23
CAF120P53836 YBL100W-BYBL100W-B 5313 nt1.11□□□□□ -2.23
CAF120P53836 SCC2YDR180W 4482 nt1.1□□□□□ -2.23
CAF120P53836 BUD3YCL014W 4911 nt1.1□□□□□ -2.23
CAF120P53836 LTE1YAL024C 4308 nt1.06□□□□□ -2.24
CAF120P53836 BEM2YER155C 6504 nt1.05□□□□□ -2.24
CAF120P53836 YML100W-AYML100W-A 174 nt1.04□□□□□ -2.24
CAF120P53836 EMT1tM(CAU)D 73 nt1.01□□□□□ -2.25
CAF120P53836 EMT5tM(CAU)J1 73 nt1.01□□□□□ -2.25
CAF120P53836 EMT3tM(CAU)J2 73 nt1.01□□□□□ -2.25
CAF120P53836 EMT4tM(CAU)M 73 nt1.01□□□□□ -2.25
CAF120P53836 EMT2tM(CAU)O2 73 nt1.01□□□□□ -2.25
CAF120P53836 YJR029WYJR029W 5268 nt0.99□□□□□ -2.25
CAF120P53836 YPR137C-BYPR137C-B 5268 nt0.99□□□□□ -2.25
CAF120P53836 YKL145W-AYKL145W-A 93 nt0.95□□□□□ -2.26
CAF120P53836 MLP1YKR095W 5628 nt0.9□□□□□ -2.27
CAF120P53836 ESP1YGR098C 4893 nt0.85□□□□□ -2.27
CAF120P53836 YJL113WYJL113W 4647 nt0.84□□□□□ -2.27
CAF120P53836 YOR186C-AYOR186C-A 210 nt0.84□□□□□ -2.27
CAF120P53836 tC(GCA)QtC(GCA)Q 76 nt0.82□□□□□ -2.28
CAF120P53836 IQG1YPL242C 4488 nt0.8□□□□□ -2.28
CAF120P53836 THO2YNL139C 4794 nt0.79□□□□□ -2.28
CAF120P53836 FMP27YLR454W 7887 nt0.77□□□□□ -2.29
CAF120P53836 YPR159C-AYPR159C-A 102 nt0.77□□□□□ -2.29
CAF120P53836 tT(AGU)BtT(AGU)B 73 nt0.75□□□□□ -2.29
CAF120P53836 tT(AGU)CtT(AGU)C 73 nt0.75□□□□□ -2.29
CAF120P53836 tT(AGU)DtT(AGU)D 73 nt0.75□□□□□ -2.29
CAF120P53836 tT(AGU)HtT(AGU)H 73 nt0.75□□□□□ -2.29
CAF120P53836 tT(AGU)I1tT(AGU)I1 73 nt0.75□□□□□ -2.29
CAF120P53836 tT(AGU)I2tT(AGU)I2 73 nt0.75□□□□□ -2.29
CAF120P53836 tT(AGU)JtT(AGU)J 73 nt0.75□□□□□ -2.29
CAF120P53836 tT(AGU)N1tT(AGU)N1 73 nt0.75□□□□□ -2.29
CAF120P53836 tT(AGU)N2tT(AGU)N2 73 nt0.75□□□□□ -2.29
CAF120P53836 tT(AGU)O1tT(AGU)O1 73 nt0.75□□□□□ -2.29
CAF120P53836 tT(AGU)O2tT(AGU)O2 73 nt0.75□□□□□ -2.29
CAF120P53836 PAU9YBL108C-A 129 nt0.7□□□□□ -2.3
CAF120P53836 RPL41BYDL133C-A 78 nt0.66□□□□□ -2.3
Retrieved 100 of 7,029 protein–RNA pairs in 13.9 ms