Protein–RNA interactions for Protein: P40965

MSH4, MutS protein homolog 4, yeastyeast

Predicted RBP Predictions only

Length 878 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
MSH4P40965 YLR299C-AYLR299C-A 93 nt1.41□□□□□ -2.18
MSH4P40965 NST1YNL091W 3723 nt1.41□□□□□ -2.18
MSH4P40965 snR69snR69 101 nt1.4□□□□□ -2.19
MSH4P40965 snR64snR64 101 nt1.39□□□□□ -2.19
MSH4P40965 CSE1YGL238W 2883 nt1.38□□□□□ -2.19
MSH4P40965 YDL159C-BYDL159C-B 177 nt1.37□□□□□ -2.19
MSH4P40965 YPR117WYPR117W 7470 nt1.35□□□□□ -2.19
MSH4P40965 RDS3YPR094W 324 nt1.34□□□□□ -2.19
MSH4P40965 YLL006W-AYLL006W-A 177 nt1.32□□□□□ -2.2
MSH4P40965 SPT7YBR081C 3999 nt1.32□□□□□ -2.2
MSH4P40965 VAM6YDL077C 3150 nt1.3□□□□□ -2.2
MSH4P40965 YPL060C-AYPL060C-A 3315 nt1.3□□□□□ -2.2
MSH4P40965 NIP1YMR309C 2439 nt1.28□□□□□ -2.2
MSH4P40965 BEM2YER155C 6504 nt1.28□□□□□ -2.2
MSH4P40965 YJL077W-AYJL077W-A 87 nt1.27□□□□□ -2.21
MSH4P40965 YKL225WYKL225W 348 nt1.27□□□□□ -2.21
MSH4P40965 snR50snR50 90 nt1.27□□□□□ -2.21
MSH4P40965 BUL2YML111W 2763 nt1.25□□□□□ -2.21
MSH4P40965 YHR180C-BYHR180C-B 105 nt1.25□□□□□ -2.21
MSH4P40965 YML054C-AYML054C-A 159 nt1.24□□□□□ -2.21
MSH4P40965 YJR029WYJR029W 5268 nt1.24□□□□□ -2.21
MSH4P40965 YPR137C-BYPR137C-B 5268 nt1.24□□□□□ -2.21
MSH4P40965 PAU12YGR294W 363 nt1.23□□□□□ -2.21
MSH4P40965 SCC2YDR180W 4482 nt1.23□□□□□ -2.21
MSH4P40965 BUD3YCL014W 4911 nt1.22□□□□□ -2.21
MSH4P40965 YBR109W-AYBR109W-A 225 nt1.22□□□□□ -2.21
MSH4P40965 UTP20YBL004W 7482 nt1.21□□□□□ -2.22
MSH4P40965 RPL41AYDL184C 78 nt1.2□□□□□ -2.22
MSH4P40965 PAU24YBR301W 363 nt1.19□□□□□ -2.22
MSH4P40965 tQ(UUG)QtQ(UUG)Q 76 nt1.18□□□□□ -2.22
MSH4P40965 YBR296C-AYBR296C-A 120 nt1.17□□□□□ -2.22
MSH4P40965 YDR371C-AYDR371C-A 105 nt1.15□□□□□ -2.23
MSH4P40965 EMT1tM(CAU)D 73 nt1.14□□□□□ -2.23
MSH4P40965 EMT5tM(CAU)J1 73 nt1.14□□□□□ -2.23
MSH4P40965 EMT3tM(CAU)J2 73 nt1.14□□□□□ -2.23
MSH4P40965 EMT4tM(CAU)M 73 nt1.14□□□□□ -2.23
MSH4P40965 EMT2tM(CAU)O2 73 nt1.14□□□□□ -2.23
MSH4P40965 snR38snR38 95 nt1.13□□□□□ -2.23
MSH4P40965 RKR1YMR247C 4689 nt1.13□□□□□ -2.23
MSH4P40965 YOR192C-BYOR192C-B 5313 nt1.08□□□□□ -2.24
MSH4P40965 tF(GAA)BtF(GAA)B 73 nt1.08□□□□□ -2.24
MSH4P40965 tF(GAA)FtF(GAA)F 73 nt1.08□□□□□ -2.24
MSH4P40965 tF(GAA)GtF(GAA)G 73 nt1.08□□□□□ -2.24
MSH4P40965 tF(GAA)H1tF(GAA)H1 73 nt1.08□□□□□ -2.24
MSH4P40965 tF(GAA)H2tF(GAA)H2 73 nt1.08□□□□□ -2.24
MSH4P40965 tF(GAA)MtF(GAA)M 73 nt1.08□□□□□ -2.24
MSH4P40965 tF(GAA)P1tF(GAA)P1 73 nt1.08□□□□□ -2.24
MSH4P40965 tF(GAA)P2tF(GAA)P2 73 nt1.08□□□□□ -2.24
MSH4P40965 LTE1YAL024C 4308 nt1.07□□□□□ -2.24
MSH4P40965 AI1Q0050 2505 nt1.07□□□□□ -2.24
MSH4P40965 DOP1YDR141C 5097 nt1.07□□□□□ -2.24
MSH4P40965 YER090C-AYER090C-A 90 nt1.06□□□□□ -2.24
MSH4P40965 SKI7YOR076C 2244 nt1.04□□□□□ -2.24
MSH4P40965 YDL159W-AYDL159W-A 132 nt1.03□□□□□ -2.24
MSH4P40965 MYO1YHR023W 5787 nt1.03□□□□□ -2.24
MSH4P40965 YLR149C-AYLR149C-A 87 nt1□□□□□ -2.25
MSH4P40965 YMR160WYMR160W 2451 nt0.99□□□□□ -2.25
MSH4P40965 YNL054W-BYNL054W-B 5250 nt0.99□□□□□ -2.25
MSH4P40965 PET111YMR257C 2403 nt0.99□□□□□ -2.25
MSH4P40965 YGR122C-AYGR122C-A 129 nt0.93□□□□□ -2.26
MSH4P40965 YKL096C-BYKL096C-B 150 nt0.93□□□□□ -2.26
MSH4P40965 snR67snR67 82 nt0.9□□□□□ -2.27
MSH4P40965 tT(AGU)BtT(AGU)B 73 nt0.87□□□□□ -2.27
MSH4P40965 tT(AGU)CtT(AGU)C 73 nt0.87□□□□□ -2.27
MSH4P40965 tT(AGU)DtT(AGU)D 73 nt0.87□□□□□ -2.27
MSH4P40965 tT(AGU)HtT(AGU)H 73 nt0.87□□□□□ -2.27
MSH4P40965 tT(AGU)I1tT(AGU)I1 73 nt0.87□□□□□ -2.27
MSH4P40965 tT(AGU)I2tT(AGU)I2 73 nt0.87□□□□□ -2.27
MSH4P40965 tT(AGU)JtT(AGU)J 73 nt0.87□□□□□ -2.27
MSH4P40965 tT(AGU)N1tT(AGU)N1 73 nt0.87□□□□□ -2.27
MSH4P40965 tT(AGU)N2tT(AGU)N2 73 nt0.87□□□□□ -2.27
MSH4P40965 tT(AGU)O1tT(AGU)O1 73 nt0.87□□□□□ -2.27
MSH4P40965 tT(AGU)O2tT(AGU)O2 73 nt0.87□□□□□ -2.27
MSH4P40965 YOL014WYOL014W 375 nt0.86□□□□□ -2.27
MSH4P40965 YBL100W-BYBL100W-B 5313 nt0.84□□□□□ -2.27
MSH4P40965 IQG1YPL242C 4488 nt0.84□□□□□ -2.28
MSH4P40965 YPR159C-AYPR159C-A 102 nt0.82□□□□□ -2.28
MSH4P40965 MLP1YKR095W 5628 nt0.81□□□□□ -2.28
MSH4P40965 YMR272W-AYMR272W-A 114 nt0.79□□□□□ -2.28
MSH4P40965 MLP2YIL149C 5040 nt0.79□□□□□ -2.28
MSH4P40965 YKL145W-AYKL145W-A 93 nt0.77□□□□□ -2.29
MSH4P40965 snR75snR75 89 nt0.74□□□□□ -2.29
MSH4P40965 FMP27YLR454W 7887 nt0.74□□□□□ -2.29
MSH4P40965 YER078W-AYER078W-A 165 nt0.72□□□□□ -2.29
MSH4P40965 YOR186C-AYOR186C-A 210 nt0.71□□□□□ -2.3
MSH4P40965 YKL106C-AYKL106C-A 120 nt0.66□□□□□ -2.3
MSH4P40965 UTP10YJL109C 5310 nt0.63□□□□□ -2.31
MSH4P40965 YML100W-AYML100W-A 174 nt0.6□□□□□ -2.31
MSH4P40965 YDL114W-AYDL114W-A 114 nt0.57□□□□□ -2.32
MSH4P40965 THO2YNL139C 4794 nt0.56□□□□□ -2.32
MSH4P40965 SOV1YMR066W 2697 nt0.49□□□□□ -2.33
MSH4P40965 tV(UAC)QtV(UAC)Q 76 nt0.48□□□□□ -2.33
MSH4P40965 YOR376W-AYOR376W-A 156 nt0.45□□□□□ -2.34
MSH4P40965 ESP1YGR098C 4893 nt0.44□□□□□ -2.34
MSH4P40965 snR128snR128 126 nt0.39□□□□□ -2.35
MSH4P40965 YOR316C-AYOR316C-A 210 nt0.38□□□□□ -2.35
MSH4P40965 YOL013W-AYOL013W-A 192 nt0.35□□□□□ -2.35
MSH4P40965 PAU9YBL108C-A 129 nt0.34□□□□□ -2.36
MSH4P40965 snR77snR77 88 nt0.3□□□□□ -2.36
MSH4P40965 SBH2YER019C-A 267 nt0.3□□□□□ -2.36
Retrieved 100 of 7,029 protein–RNA pairs in 10.5 ms