Protein–RNA interactions for Protein: P18898

CDC43, Geranylgeranyl transferase type-1 subunit beta, yeastyeast

Predictions only

Length 376 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
CDC43P18898 SCC2YDR180W 4482 nt0.99□□□□□ -2.25
CDC43P18898 YDL159C-BYDL159C-B 177 nt0.97□□□□□ -2.25
CDC43P18898 CAT8YMR280C 4302 nt0.96□□□□□ -2.26
CDC43P18898 BEM2YER155C 6504 nt0.96□□□□□ -2.26
CDC43P18898 YOR192C-BYOR192C-B 5313 nt0.96□□□□□ -2.26
CDC43P18898 HUG1YML058W-A 207 nt0.95□□□□□ -2.26
CDC43P18898 RDS3YPR094W 324 nt0.95□□□□□ -2.26
CDC43P18898 PAU12YGR294W 363 nt0.94□□□□□ -2.26
CDC43P18898 YML054C-AYML054C-A 159 nt0.92□□□□□ -2.26
CDC43P18898 snR53snR53 91 nt0.92□□□□□ -2.26
CDC43P18898 snR64snR64 101 nt0.91□□□□□ -2.26
CDC43P18898 YBR109W-AYBR109W-A 225 nt0.9□□□□□ -2.27
CDC43P18898 VAM6YDL077C 3150 nt0.9□□□□□ -2.27
CDC43P18898 SIP4YJL089W 2490 nt0.89□□□□□ -2.27
CDC43P18898 YJR029WYJR029W 5268 nt0.88□□□□□ -2.27
CDC43P18898 YPR137C-BYPR137C-B 5268 nt0.88□□□□□ -2.27
CDC43P18898 snR38snR38 95 nt0.88□□□□□ -2.27
CDC43P18898 DOP1YDR141C 5097 nt0.88□□□□□ -2.27
CDC43P18898 tH(GUG)E1tH(GUG)E1 72 nt0.87□□□□□ -2.27
CDC43P18898 tH(GUG)E2tH(GUG)E2 72 nt0.87□□□□□ -2.27
CDC43P18898 tH(GUG)G1tH(GUG)G1 72 nt0.87□□□□□ -2.27
CDC43P18898 tH(GUG)G2tH(GUG)G2 72 nt0.87□□□□□ -2.27
CDC43P18898 tH(GUG)HtH(GUG)H 72 nt0.87□□□□□ -2.27
CDC43P18898 tH(GUG)KtH(GUG)K 72 nt0.87□□□□□ -2.27
CDC43P18898 tH(GUG)MtH(GUG)M 72 nt0.87□□□□□ -2.27
CDC43P18898 YJL077W-AYJL077W-A 87 nt0.87□□□□□ -2.27
CDC43P18898 LTE1YAL024C 4308 nt0.85□□□□□ -2.27
CDC43P18898 YKL225WYKL225W 348 nt0.85□□□□□ -2.27
CDC43P18898 YDR371C-AYDR371C-A 105 nt0.84□□□□□ -2.27
CDC43P18898 tV(UAC)BtV(UAC)B 74 nt0.84□□□□□ -2.27
CDC43P18898 tV(UAC)DtV(UAC)D 74 nt0.84□□□□□ -2.27
CDC43P18898 AI1Q0050 2505 nt0.83□□□□□ -2.28
CDC43P18898 EMT1tM(CAU)D 73 nt0.83□□□□□ -2.28
CDC43P18898 EMT5tM(CAU)J1 73 nt0.83□□□□□ -2.28
CDC43P18898 EMT3tM(CAU)J2 73 nt0.83□□□□□ -2.28
CDC43P18898 EMT4tM(CAU)M 73 nt0.83□□□□□ -2.28
CDC43P18898 EMT2tM(CAU)O2 73 nt0.83□□□□□ -2.28
CDC43P18898 IML1YJR138W 4755 nt0.82□□□□□ -2.28
CDC43P18898 YHR180C-BYHR180C-B 105 nt0.8□□□□□ -2.28
CDC43P18898 snR50snR50 90 nt0.8□□□□□ -2.28
CDC43P18898 tQ(UUG)QtQ(UUG)Q 76 nt0.79□□□□□ -2.28
CDC43P18898 PAU24YBR301W 363 nt0.79□□□□□ -2.28
CDC43P18898 YBL100W-BYBL100W-B 5313 nt0.79□□□□□ -2.28
CDC43P18898 YER090C-AYER090C-A 90 nt0.78□□□□□ -2.28
CDC43P18898 RPL41AYDL184C 78 nt0.76□□□□□ -2.29
CDC43P18898 YBR296C-AYBR296C-A 120 nt0.76□□□□□ -2.29
CDC43P18898 PET111YMR257C 2403 nt0.74□□□□□ -2.29
CDC43P18898 YDL159W-AYDL159W-A 132 nt0.7□□□□□ -2.3
CDC43P18898 YMR160WYMR160W 2451 nt0.7□□□□□ -2.3
CDC43P18898 YLR149C-AYLR149C-A 87 nt0.61□□□□□ -2.31
CDC43P18898 snR67snR67 82 nt0.59□□□□□ -2.31
CDC43P18898 SKI7YOR076C 2244 nt0.58□□□□□ -2.32
CDC43P18898 ESP1YGR098C 4893 nt0.58□□□□□ -2.32
CDC43P18898 MLP2YIL149C 5040 nt0.58□□□□□ -2.32
CDC43P18898 IQG1YPL242C 4488 nt0.58□□□□□ -2.32
CDC43P18898 UTP20YBL004W 7482 nt0.55□□□□□ -2.32
CDC43P18898 YGR122C-AYGR122C-A 129 nt0.55□□□□□ -2.32
CDC43P18898 YPR159C-AYPR159C-A 102 nt0.55□□□□□ -2.32
CDC43P18898 SOV1YMR066W 2697 nt0.54□□□□□ -2.32
CDC43P18898 YMR272W-AYMR272W-A 114 nt0.54□□□□□ -2.32
CDC43P18898 UTP10YJL109C 5310 nt0.54□□□□□ -2.32
CDC43P18898 MLP1YKR095W 5628 nt0.49□□□□□ -2.33
CDC43P18898 YML100W-AYML100W-A 174 nt0.48□□□□□ -2.33
CDC43P18898 tF(GAA)BtF(GAA)B 73 nt0.46□□□□□ -2.34
CDC43P18898 tF(GAA)FtF(GAA)F 73 nt0.46□□□□□ -2.34
CDC43P18898 tF(GAA)GtF(GAA)G 73 nt0.46□□□□□ -2.34
CDC43P18898 tF(GAA)H1tF(GAA)H1 73 nt0.46□□□□□ -2.34
CDC43P18898 tF(GAA)H2tF(GAA)H2 73 nt0.46□□□□□ -2.34
CDC43P18898 tF(GAA)MtF(GAA)M 73 nt0.46□□□□□ -2.34
CDC43P18898 tF(GAA)P1tF(GAA)P1 73 nt0.46□□□□□ -2.34
CDC43P18898 tF(GAA)P2tF(GAA)P2 73 nt0.46□□□□□ -2.34
CDC43P18898 YOR186C-AYOR186C-A 210 nt0.45□□□□□ -2.34
CDC43P18898 THO2YNL139C 4794 nt0.44□□□□□ -2.34
CDC43P18898 YKL096C-BYKL096C-B 150 nt0.42□□□□□ -2.34
CDC43P18898 tT(AGU)BtT(AGU)B 73 nt0.41□□□□□ -2.34
CDC43P18898 tT(AGU)CtT(AGU)C 73 nt0.41□□□□□ -2.34
CDC43P18898 tT(AGU)DtT(AGU)D 73 nt0.41□□□□□ -2.34
CDC43P18898 tT(AGU)HtT(AGU)H 73 nt0.41□□□□□ -2.34
CDC43P18898 tT(AGU)I1tT(AGU)I1 73 nt0.41□□□□□ -2.34
CDC43P18898 tT(AGU)I2tT(AGU)I2 73 nt0.41□□□□□ -2.34
CDC43P18898 tT(AGU)JtT(AGU)J 73 nt0.41□□□□□ -2.34
CDC43P18898 tT(AGU)N1tT(AGU)N1 73 nt0.41□□□□□ -2.34
CDC43P18898 tT(AGU)N2tT(AGU)N2 73 nt0.41□□□□□ -2.34
CDC43P18898 tT(AGU)O1tT(AGU)O1 73 nt0.41□□□□□ -2.34
CDC43P18898 tT(AGU)O2tT(AGU)O2 73 nt0.41□□□□□ -2.34
CDC43P18898 YKL106C-AYKL106C-A 120 nt0.36□□□□□ -2.35
CDC43P18898 YKL145W-AYKL145W-A 93 nt0.36□□□□□ -2.35
CDC43P18898 FMP27YLR454W 7887 nt0.36□□□□□ -2.35
CDC43P18898 YOL014WYOL014W 375 nt0.35□□□□□ -2.35
CDC43P18898 tV(UAC)QtV(UAC)Q 76 nt0.3□□□□□ -2.36
CDC43P18898 YOR376W-AYOR376W-A 156 nt0.3□□□□□ -2.36
CDC43P18898 YOL013W-AYOL013W-A 192 nt0.29□□□□□ -2.36
CDC43P18898 YDL114W-AYDL114W-A 114 nt0.26□□□□□ -2.37
CDC43P18898 YER078W-AYER078W-A 165 nt0.22□□□□□ -2.37
CDC43P18898 snR128snR128 126 nt0.22□□□□□ -2.37
CDC43P18898 snR75snR75 89 nt0.19□□□□□ -2.38
CDC43P18898 YOR316C-AYOR316C-A 210 nt0.17□□□□□ -2.38
CDC43P18898 PAU9YBL108C-A 129 nt0.12□□□□□ -2.39
CDC43P18898 snR77snR77 88 nt0.09□□□□□ -2.4
CDC43P18898 tA(UGC)QtA(UGC)Q 76 nt0.09□□□□□ -2.4
Retrieved 100 of 7,029 protein–RNA pairs in 29 ms