Protein–RNA interactions for Protein: O95628

CNOT4, CCR4-NOT transcription complex subunit 4, humanhuman

Known RBP Predictions only

Length 575 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CNOT4O95628 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
CNOT4O95628 ETV7-203ENST00000373737 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
CNOT4O95628 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
CNOT4O95628 MTMR9LP-202ENST00000423995 1878 ntTSL 2 BASIC17.69■□□□□ 0.42
CNOT4O95628 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC17.69■□□□□ 0.42
CNOT4O95628 SUPT4H1-202ENST00000577396 1643 ntTSL 2 BASIC17.69■□□□□ 0.42
CNOT4O95628 DENND1A-203ENST00000373624 5010 ntAPPRIS P4 TSL 5 BASIC17.69■□□□□ 0.42
CNOT4O95628 TMEM255B-202ENST00000375353 6100 ntAPPRIS P2 TSL 1 (best) BASIC17.69■□□□□ 0.42
CNOT4O95628 MBD3-201ENST00000156825 5518 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
CNOT4O95628 TEX45-201ENST00000361664 1679 ntAPPRIS P2 TSL 1 (best) BASIC17.69■□□□□ 0.42
CNOT4O95628 CD247-202ENST00000392122 1678 ntAPPRIS ALT1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CNOT4O95628 GGTLC1-203ENST00000335694 1046 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CNOT4O95628 NMRK1-201ENST00000361092 1185 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CNOT4O95628 MTHFD1L-201ENST00000367307 1049 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
CNOT4O95628 AGTRAP-203ENST00000376629 1100 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
CNOT4O95628 RTBDN-203ENST00000458671 1066 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
CNOT4O95628 AC008443.1-203ENST00000505151 886 ntTSL 2 BASIC17.69■□□□□ 0.42
CNOT4O95628 DEUP1-206ENST00000530273 410 ntTSL 3 BASIC17.69■□□□□ 0.42
CNOT4O95628 TMEM191C-212ENST00000536718 480 ntAPPRIS ALT2 TSL 5 BASIC17.69■□□□□ 0.42
CNOT4O95628 COX4I1-202ENST00000561569 716 ntAPPRIS P1 TSL 2 BASIC17.69■□□□□ 0.42
CNOT4O95628 CES1P1-204ENST00000574030 877 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
CNOT4O95628 AC127496.6-201ENST00000576215 338 ntTSL 3 BASIC17.69■□□□□ 0.42
CNOT4O95628 AL031963.3-201ENST00000606441 850 ntBASIC17.69■□□□□ 0.42
CNOT4O95628 AC120498.8-201ENST00000614275 531 ntBASIC17.69■□□□□ 0.42
CNOT4O95628 OGG1-205ENST00000344629 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
CNOT4O95628 AC005224.2-201ENST00000571192 1885 ntTSL 2 BASIC17.69■□□□□ 0.42
CNOT4O95628 ARRB2-216ENST00000574954 1348 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
CNOT4O95628 PTBP1P-201ENST00000554374 1601 ntBASIC17.69■□□□□ 0.42
CNOT4O95628 NDUFAF6-203ENST00000396124 1798 ntAPPRIS P1 TSL 2 BASIC17.68■□□□□ 0.42
CNOT4O95628 GOLGA3-203ENST00000456883 5496 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
CNOT4O95628 FAM129C-207ENST00000599124 1918 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
CNOT4O95628 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC17.68■□□□□ 0.42
CNOT4O95628 UBA5-211ENST00000493720 2058 ntTSL 5 BASIC17.68■□□□□ 0.42
CNOT4O95628 POMGNT2-202ENST00000441964 2531 ntAPPRIS P1 TSL 4 BASIC17.68■□□□□ 0.42
CNOT4O95628 RELA-201ENST00000308639 2681 ntAPPRIS ALT1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CNOT4O95628 LPAR1-201ENST00000358883 2687 ntAPPRIS P2 TSL 2 BASIC17.68■□□□□ 0.42
CNOT4O95628 SMTNL2-202ENST00000389313 2280 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CNOT4O95628 IQSEC2-218ENST00000640694 5958 ntAPPRIS ALT2 TSL 5 BASIC17.68■□□□□ 0.42
CNOT4O95628 CADPS2-202ENST00000334010 6045 ntAPPRIS ALT2 TSL 5 BASIC17.68■□□□□ 0.42
CNOT4O95628 DNTTIP1-201ENST00000372622 1290 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CNOT4O95628 TMEM35B-201ENST00000373337 922 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CNOT4O95628 AC007405.3-201ENST00000429172 561 ntTSL 3 BASIC17.68■□□□□ 0.42
CNOT4O95628 RPH3AL-203ENST00000536489 1235 ntTSL 2 BASIC17.68■□□□□ 0.42
CNOT4O95628 FAM213B-215ENST00000537325 1096 ntAPPRIS ALT2 TSL 2 BASIC17.68■□□□□ 0.42
CNOT4O95628 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC17.68■□□□□ 0.42
CNOT4O95628 AC073912.1-201ENST00000546264 587 ntTSL 3 BASIC17.68■□□□□ 0.42
CNOT4O95628 SEC23A-AS1-201ENST00000557350 500 ntTSL 3 BASIC17.68■□□□□ 0.42
CNOT4O95628 EIF3J-AS1-205ENST00000560750 1093 ntTSL 3 BASIC17.68■□□□□ 0.42
CNOT4O95628 C17orf97-203ENST00000571106 736 ntAPPRIS ALT2 TSL 2 BASIC17.68■□□□□ 0.42
CNOT4O95628 EEF1D-204ENST00000423316 2378 ntAPPRIS P4 TSL 5 BASIC17.68■□□□□ 0.42
CNOT4O95628 PLCB2-204ENST00000557821 4517 ntAPPRIS ALT1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CNOT4O95628 SLC35E4-202ENST00000406566 2081 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
CNOT4O95628 ACOT2-201ENST00000238651 1774 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
CNOT4O95628 DBNDD2-206ENST00000372720 1481 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
CNOT4O95628 AC010173.1-201ENST00000549023 1453 ntTSL 2 BASIC17.68■□□□□ 0.42
CNOT4O95628 TACC3-213ENST00000617535 1693 ntTSL 5 BASIC17.67■□□□□ 0.42
CNOT4O95628 PAQR6-213ENST00000612424 2037 ntTSL 2 BASIC17.67■□□□□ 0.42
CNOT4O95628 ZDHHC8P1-201ENST00000255890 2382 ntTSL 2 BASIC17.67■□□□□ 0.42
CNOT4O95628 ZNF821-211ENST00000564134 1748 ntTSL 5 BASIC17.67■□□□□ 0.42
CNOT4O95628 MAP2K5-203ENST00000354498 1783 ntTSL 2 BASIC17.67■□□□□ 0.42
CNOT4O95628 AC068473.1-201ENST00000317008 1111 ntTSL 2 BASIC17.67■□□□□ 0.42
CNOT4O95628 NDUFB1-201ENST00000329559 528 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
CNOT4O95628 NPY-202ENST00000405982 565 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CNOT4O95628 AP000697.1-201ENST00000430607 339 ntTSL 5 BASIC17.67■□□□□ 0.42
CNOT4O95628 ZNF529-AS1-202ENST00000475219 1033 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
CNOT4O95628 GOSR2-208ENST00000573224 1115 ntTSL 5 BASIC17.67■□□□□ 0.42
CNOT4O95628 FAM117B-201ENST00000392238 5763 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CNOT4O95628 TACO1-201ENST00000258975 1469 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CNOT4O95628 INPP1-202ENST00000392329 2162 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
CNOT4O95628 CFAP97-205ENST00000514798 2895 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
CNOT4O95628 GORASP1-220ENST00000479927 1345 ntTSL 2 BASIC17.67■□□□□ 0.42
CNOT4O95628 DAZAP2-201ENST00000412716 2598 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CNOT4O95628 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
CNOT4O95628 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
CNOT4O95628 IKZF1-209ENST00000438033 1748 ntTSL 2 BASIC17.67■□□□□ 0.42
CNOT4O95628 TMCO3-201ENST00000375391 2132 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
CNOT4O95628 SEPT7-206ENST00000435235 1584 ntTSL 2 BASIC17.66■□□□□ 0.42
CNOT4O95628 WIPF1-205ENST00000409415 1772 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
CNOT4O95628 ACVR1C-201ENST00000243349 8994 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CNOT4O95628 ZNF707-201ENST00000358656 2183 ntAPPRIS P1 TSL 2 BASIC17.66■□□□□ 0.42
CNOT4O95628 SAMD10-201ENST00000369886 2181 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CNOT4O95628 ASB18-201ENST00000409749 1401 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CNOT4O95628 DUSP5-201ENST00000369583 2557 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CNOT4O95628 SNRPA-201ENST00000243563 1621 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CNOT4O95628 ST3GAL4-204ENST00000444328 1812 ntAPPRIS ALT1 TSL 5 BASIC17.66■□□□□ 0.42
CNOT4O95628 ZNF821-202ENST00000425432 2000 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
CNOT4O95628 PTPRE-201ENST00000254667 5331 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CNOT4O95628 COMT-202ENST00000361682 2437 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
CNOT4O95628 COPS9-201ENST00000307266 759 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
CNOT4O95628 AC079145.1-201ENST00000416575 541 ntTSL 2 BASIC17.66■□□□□ 0.42
CNOT4O95628 HOTAIRM1-203ENST00000429611 722 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
CNOT4O95628 RPS23-206ENST00000510210 1058 ntTSL 2 BASIC17.66■□□□□ 0.42
CNOT4O95628 AP001458.2-201ENST00000528405 577 ntAPPRIS P1 TSL 4 BASIC17.66■□□□□ 0.42
CNOT4O95628 AC073648.6-201ENST00000641589 218 ntBASIC17.66■□□□□ 0.42
CNOT4O95628 PTGER3-203ENST00000354608 1470 ntAPPRIS ALT2 TSL 5 BASIC17.66■□□□□ 0.42
CNOT4O95628 DBNDD1-201ENST00000002501 2079 ntAPPRIS P1 TSL 2 BASIC17.66■□□□□ 0.42
CNOT4O95628 PKMYT1-204ENST00000440027 2061 ntTSL 2 BASIC17.66■□□□□ 0.42
CNOT4O95628 LRCH4-211ENST00000619071 2098 ntTSL 5 BASIC17.66■□□□□ 0.42
CNOT4O95628 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC17.66■□□□□ 0.42
CNOT4O95628 MTSS1L-201ENST00000338779 4992 ntAPPRIS P2 TSL 1 (best) BASIC17.66■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 53.1 ms