Protein–RNA interactions for Protein: O00409

FOXN3, Forkhead box protein N3, humanhuman

Predicted RBP Predictions only

Length 490 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXN3O00409 HLA-G-202ENST00000376815 851 ntBASIC21.36■■□□□ 1.01
FOXN3O00409 HLA-G-203ENST00000376818 1127 ntBASIC21.36■■□□□ 1.01
FOXN3O00409 C20orf196-202ENST00000378979 585 ntTSL 2 BASIC21.36■■□□□ 1.01
FOXN3O00409 DNAJC27-AS1-204ENST00000428614 780 ntTSL 3 BASIC21.36■■□□□ 1.01
FOXN3O00409 FAM229A-204ENST00000432622 699 ntAPPRIS P2 TSL 2 BASIC21.36■■□□□ 1.01
FOXN3O00409 SERP1-205ENST00000487153 657 ntTSL 4 BASIC21.36■■□□□ 1.01
FOXN3O00409 ZNF324-202ENST00000535298 1006 ntTSL 5 BASIC21.36■■□□□ 1.01
FOXN3O00409 PLEKHJ1-205ENST00000587394 937 ntTSL 2 BASIC21.36■■□□□ 1.01
FOXN3O00409 FLCN-203ENST00000389169 1692 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
FOXN3O00409 NEURL3-202ENST00000435380 1675 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
FOXN3O00409 B4GALNT1-213ENST00000552350 1649 ntTSL 4 BASIC21.36■■□□□ 1.01
FOXN3O00409 B4GALT2-201ENST00000309519 2004 ntTSL 2 BASIC21.36■■□□□ 1.01
FOXN3O00409 AQP11-201ENST00000313578 2152 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
FOXN3O00409 RAB34-201ENST00000301043 1592 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
FOXN3O00409 TH-206ENST00000381178 1910 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
FOXN3O00409 ZDHHC16-202ENST00000352634 1718 ntAPPRIS ALT1 TSL 1 (best) BASIC21.35■■□□□ 1.01
FOXN3O00409 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
FOXN3O00409 AGAP3-202ENST00000397238 3225 ntAPPRIS P2 TSL 1 (best) BASIC21.35■■□□□ 1.01
FOXN3O00409 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC21.35■■□□□ 1.01
FOXN3O00409 BIN2-210ENST00000615107 2255 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
FOXN3O00409 WDR37-203ENST00000381329 1307 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
FOXN3O00409 TCF7-201ENST00000342854 3045 ntAPPRIS P2 TSL 1 (best) BASIC21.35■■□□□ 1.01
FOXN3O00409 SSH1-209ENST00000551165 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC21.35■■□□□ 1.01
FOXN3O00409 RAMP2-201ENST00000253796 780 ntAPPRIS P2 TSL 1 (best) BASIC21.35■■□□□ 1.01
FOXN3O00409 BHLHA15-201ENST00000314018 706 ntAPPRIS P1 BASIC21.35■■□□□ 1.01
FOXN3O00409 KRTAP5-8-201ENST00000398534 1183 ntAPPRIS P1 BASIC21.35■■□□□ 1.01
FOXN3O00409 CCDC103-202ENST00000410006 921 ntAPPRIS P1 TSL 2 BASIC21.35■■□□□ 1.01
FOXN3O00409 SCO2-203ENST00000535425 1002 ntAPPRIS P1 TSL 2 BASIC21.35■■□□□ 1.01
FOXN3O00409 AC084032.1-201ENST00000552324 578 ntTSL 4 BASIC21.35■■□□□ 1.01
FOXN3O00409 BHLHA15-202ENST00000609256 796 ntAPPRIS P1 TSL 3 BASIC21.35■■□□□ 1.01
FOXN3O00409 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC21.35■■□□□ 1.01
FOXN3O00409 PPARG-202ENST00000309576 1870 ntAPPRIS ALT1 TSL 2 BASIC21.35■■□□□ 1.01
FOXN3O00409 TOR2A-203ENST00000373284 1523 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
FOXN3O00409 MOK-233ENST00000524214 1539 ntTSL 2 BASIC21.34■■□□□ 1.01
FOXN3O00409 KLC2-204ENST00000394067 2898 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
FOXN3O00409 KCNK12-201ENST00000327876 6227 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
FOXN3O00409 AC013269.1-201ENST00000409259 1653 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
FOXN3O00409 TISP43-206ENST00000623376 1653 ntAPPRIS ALT2 TSL 1 (best) BASIC21.34■■□□□ 1.01
FOXN3O00409 INSM1-201ENST00000310227 2829 ntAPPRIS P1 BASIC21.34■■□□□ 1.01
FOXN3O00409 UBE2F-205ENST00000414443 2100 ntTSL 2 BASIC21.34■■□□□ 1.01
FOXN3O00409 GOLGA2P11-201ENST00000562660 1621 ntBASIC21.34■■□□□ 1.01
FOXN3O00409 GRM6-201ENST00000231188 6143 ntAPPRIS P1 TSL 2 BASIC21.34■■□□□ 1.01
FOXN3O00409 ZSCAN1-201ENST00000282326 2054 ntAPPRIS P1 TSL 2 BASIC21.34■■□□□ 1.01
FOXN3O00409 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC21.34■■□□□ 1.01
FOXN3O00409 LINC00471-201ENST00000313064 1282 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
FOXN3O00409 FNDC11-201ENST00000370097 1119 ntAPPRIS P1 TSL 2 BASIC21.34■■□□□ 1.01
FOXN3O00409 PIGP-203ENST00000399098 972 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
FOXN3O00409 TRNT1-207ENST00000420393 854 ntTSL 3 BASIC21.34■■□□□ 1.01
FOXN3O00409 TSPY6P-201ENST00000448518 926 ntBASIC21.34■■□□□ 1.01
FOXN3O00409 RRAS2-203ENST00000526063 970 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
FOXN3O00409 RRAS2-208ENST00000532814 982 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
FOXN3O00409 TMEM41B-205ENST00000533723 723 ntTSL 2 BASIC21.34■■□□□ 1.01
FOXN3O00409 MCRIP1-203ENST00000538396 925 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
FOXN3O00409 TRAPPC3-208ENST00000616074 1114 ntTSL 5 BASIC21.34■■□□□ 1.01
FOXN3O00409 FAM170B-201ENST00000311787 1401 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
FOXN3O00409 GNAI1-201ENST00000351004 3347 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
FOXN3O00409 ACADVL-203ENST00000356839 2323 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
FOXN3O00409 ZNF12-201ENST00000342651 2921 ntAPPRIS ALT2 TSL 2 BASIC21.34■■□□□ 1.01
FOXN3O00409 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC21.34■■□□□ 1.01
FOXN3O00409 LRIG1-201ENST00000273261 5273 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
FOXN3O00409 JMJD4-202ENST00000438896 2502 ntTSL 2 BASIC21.33■■□□□ 1.01
FOXN3O00409 AC107959.1-202ENST00000502083 1945 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
FOXN3O00409 DHRS7-201ENST00000216500 2322 ntAPPRIS P1 TSL 5 BASIC21.33■■□□□ 1.01
FOXN3O00409 ZNF316-201ENST00000382252 5392 ntAPPRIS P1 TSL 5 BASIC21.33■■□□□ 1.01
FOXN3O00409 WFIKKN1-201ENST00000319070 2028 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
FOXN3O00409 AC009237.14-201ENST00000609975 1594 ntBASIC21.33■■□□□ 1.01
FOXN3O00409 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC21.33■■□□□ 1.01
FOXN3O00409 SCAMP3-201ENST00000302631 1446 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
FOXN3O00409 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC21.33■■□□□ 1.01
FOXN3O00409 GNB1-201ENST00000378609 3132 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
FOXN3O00409 WIPF1-207ENST00000410117 777 ntTSL 3 BASIC21.33■■□□□ 1.01
FOXN3O00409 ZNF302-209ENST00000507959 854 ntTSL 2 BASIC21.33■■□□□ 1.01
FOXN3O00409 ZNF696-204ENST00000520333 605 ntTSL 5 BASIC21.33■■□□□ 1.01
FOXN3O00409 ULK4P1-204ENST00000565949 721 ntTSL 4 BASIC21.33■■□□□ 1.01
FOXN3O00409 YIF1B-213ENST00000591755 1077 ntTSL 2 BASIC21.33■■□□□ 1.01
FOXN3O00409 SDK1-201ENST00000389531 7606 ntAPPRIS ALT2 TSL 5 BASIC21.33■■□□□ 1.01
FOXN3O00409 RPS6KA2-201ENST00000265678 5824 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
FOXN3O00409 TSPAN14-203ENST00000372156 1380 ntAPPRIS P1 TSL 5 BASIC21.33■■□□□ 1
FOXN3O00409 FFAR3-201ENST00000327809 1796 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
FOXN3O00409 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC21.33■■□□□ 1
FOXN3O00409 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC21.33■■□□□ 1
FOXN3O00409 STK25-204ENST00000405585 1643 ntTSL 2 BASIC21.33■■□□□ 1
FOXN3O00409 AC008105.1-201ENST00000587534 2003 ntTSL 2 BASIC21.33■■□□□ 1
FOXN3O00409 BABAM1-208ENST00000598188 1470 ntAPPRIS P3 TSL 1 (best) BASIC21.32■■□□□ 1
FOXN3O00409 NEU4-201ENST00000325935 2288 ntTSL 1 (best) BASIC21.32■■□□□ 1
FOXN3O00409 FAM120A-201ENST00000277165 5118 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
FOXN3O00409 CDKN1C-203ENST00000430149 1570 ntAPPRIS P3 TSL 1 (best) BASIC21.32■■□□□ 1
FOXN3O00409 NAA20-202ENST00000334982 1260 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
FOXN3O00409 PPP1CA-202ENST00000358239 1054 ntTSL 2 BASIC21.32■■□□□ 1
FOXN3O00409 IGFBP3-211ENST00000615754 792 ntTSL 5 BASIC21.32■■□□□ 1
FOXN3O00409 AL772284.2-201ENST00000620151 1147 ntAPPRIS P1 TSL 5 BASIC21.32■■□□□ 1
FOXN3O00409 ASAP2-202ENST00000315273 5582 ntAPPRIS ALT2 TSL 1 (best) BASIC21.32■■□□□ 1
FOXN3O00409 ACBD4-204ENST00000431281 2026 ntTSL 5 BASIC21.32■■□□□ 1
FOXN3O00409 OLFM1-205ENST00000371796 2492 ntTSL 2 BASIC21.32■■□□□ 1
FOXN3O00409 BAALC-203ENST00000309982 2831 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
FOXN3O00409 LPAR2-202ENST00000542587 2546 ntAPPRIS P1 TSL 2 BASIC21.31■■□□□ 1
FOXN3O00409 CD247-202ENST00000392122 1678 ntAPPRIS ALT1 TSL 1 (best) BASIC21.31■■□□□ 1
FOXN3O00409 TXNRD2-202ENST00000400518 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
FOXN3O00409 ANKRD2-202ENST00000307518 1449 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
FOXN3O00409 DEDD2-204ENST00000595337 1894 ntAPPRIS P3 TSL 3 BASIC21.31■■□□□ 1
Retrieved 100 of 98,524 protein–RNA pairs in 32.8 ms