Protein–RNA interactions for Protein: O00257

CBX4, E3 SUMO-protein ligase CBX4, humanhuman

Predictions only

Length 560 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4O00257 FAM163B-202ENST00000496132 811 ntAPPRIS P1 TSL 3 BASIC20.38■□□□□ 0.85
CBX4O00257 FAM213B-215ENST00000537325 1096 ntAPPRIS ALT2 TSL 2 BASIC20.38■□□□□ 0.85
CBX4O00257 DEDD2-205ENST00000596251 1183 ntAPPRIS P3 TSL 1 (best) BASIC20.38■□□□□ 0.85
CBX4O00257 TUBGCP3-204ENST00000464139 2461 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
CBX4O00257 TANGO2-217ENST00000456048 2439 ntTSL 2 BASIC20.38■□□□□ 0.85
CBX4O00257 DISC1-213ENST00000537876 2349 ntAPPRIS ALT2 TSL 2 BASIC20.38■□□□□ 0.85
CBX4O00257 IL11RA-201ENST00000318041 1728 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
CBX4O00257 ZNF497-202ENST00000425453 2261 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
CBX4O00257 MKRN1-208ENST00000474576 1661 ntTSL 5 BASIC20.38■□□□□ 0.85
CBX4O00257 LINC01505-207ENST00000637185 1540 ntTSL 5 BASIC20.37■□□□□ 0.85
CBX4O00257 ST6GALNAC6-215ENST00000542456 2018 ntTSL 2 BASIC20.37■□□□□ 0.85
CBX4O00257 RHNO1-204ENST00000489288 1870 ntAPPRIS P3 TSL 1 (best) BASIC20.37■□□□□ 0.85
CBX4O00257 RNASET2-214ENST00000620173 1391 ntTSL 5 BASIC20.37■□□□□ 0.85
CBX4O00257 INTS11-202ENST00000411962 1832 ntTSL 5 BASIC20.37■□□□□ 0.85
CBX4O00257 TMEM259-202ENST00000356663 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
CBX4O00257 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
CBX4O00257 C19orf35-201ENST00000342063 2574 ntAPPRIS P1 TSL 2 BASIC20.37■□□□□ 0.85
CBX4O00257 NMRK1-201ENST00000361092 1185 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
CBX4O00257 CIZ1-204ENST00000372938 2984 ntAPPRIS P3 TSL 1 (best) BASIC20.37■□□□□ 0.85
CBX4O00257 VKORC1-204ENST00000394971 664 ntTSL 5 BASIC20.37■□□□□ 0.85
CBX4O00257 AC007040.1-201ENST00000416229 477 ntTSL 3 BASIC20.37■□□□□ 0.85
CBX4O00257 YWHAZ-209ENST00000419477 891 ntAPPRIS P1 TSL 3 BASIC20.37■□□□□ 0.85
CBX4O00257 FAM131A-208ENST00000453072 1038 ntTSL 2 BASIC20.37■□□□□ 0.85
CBX4O00257 RARRES1-204ENST00000479756 839 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
CBX4O00257 AC080023.1-201ENST00000526906 803 ntTSL 2 BASIC20.37■□□□□ 0.85
CBX4O00257 CES1P1-204ENST00000574030 877 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
CBX4O00257 HSD17B12-213ENST00000637401 866 ntTSL 4 BASIC20.37■□□□□ 0.85
CBX4O00257 JADE2-204ENST00000402835 2797 ntTSL 5 BASIC20.37■□□□□ 0.85
CBX4O00257 GPSM1-206ENST00000616132 2270 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
CBX4O00257 KREMEN2-202ENST00000319500 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
CBX4O00257 GOLGA4-208ENST00000444882 1451 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
CBX4O00257 TINAGL1-211ENST00000537531 1841 ntAPPRIS ALT2 TSL 5 BASIC20.37■□□□□ 0.85
CBX4O00257 TCP11-202ENST00000311875 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC20.36■□□□□ 0.85
CBX4O00257 FAM171A2-201ENST00000293443 3160 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
CBX4O00257 SOBP-201ENST00000317357 5245 ntAPPRIS P1 TSL 5 BASIC20.36■□□□□ 0.85
CBX4O00257 GUCY1A3-210ENST00000513574 2656 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
CBX4O00257 NAAA-206ENST00000507956 1300 ntAPPRIS ALT2 TSL 2 BASIC20.36■□□□□ 0.85
CBX4O00257 ARRB2-216ENST00000574954 1348 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
CBX4O00257 CLK3-202ENST00000395066 2621 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
CBX4O00257 PARL-201ENST00000311101 1240 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
CBX4O00257 PLPP7-201ENST00000372261 972 ntTSL 2 BASIC20.36■□□□□ 0.85
CBX4O00257 NDUFA8-201ENST00000373768 844 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
CBX4O00257 LINC00708-201ENST00000428165 916 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
CBX4O00257 EPHA5-AS1-202ENST00000509473 1177 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
CBX4O00257 THAP6-213ENST00000514480 1161 ntAPPRIS P3 TSL 1 (best) BASIC20.36■□□□□ 0.85
CBX4O00257 AP001458.2-201ENST00000528405 577 ntAPPRIS P1 TSL 4 BASIC20.36■□□□□ 0.85
CBX4O00257 EIF3J-AS1-205ENST00000560750 1093 ntTSL 3 BASIC20.36■□□□□ 0.85
CBX4O00257 AC044860.1-201ENST00000560756 1160 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
CBX4O00257 MAZ-215ENST00000569978 567 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
CBX4O00257 NCBP2-AS2-201ENST00000602845 918 ntAPPRIS P1 BASIC20.36■□□□□ 0.85
CBX4O00257 UBE2B-201ENST00000265339 2515 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
CBX4O00257 CDK5R2-201ENST00000302625 2508 ntAPPRIS P1 BASIC20.36■□□□□ 0.85
CBX4O00257 RAB34-201ENST00000301043 1592 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
CBX4O00257 DNAJA4-202ENST00000394852 3116 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
CBX4O00257 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC20.36■□□□□ 0.85
CBX4O00257 MAP3K21-203ENST00000366624 5809 ntAPPRIS P2 TSL 1 (best) BASIC20.36■□□□□ 0.85
CBX4O00257 PLD6-201ENST00000321560 2560 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
CBX4O00257 KRT16P6-202ENST00000425692 1426 ntBASIC20.36■□□□□ 0.85
CBX4O00257 FLCN-203ENST00000389169 1692 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
CBX4O00257 KCNMB4-201ENST00000258111 4731 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
CBX4O00257 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
CBX4O00257 ZNF707-201ENST00000358656 2183 ntAPPRIS P1 TSL 2 BASIC20.35■□□□□ 0.85
CBX4O00257 PRDM11-201ENST00000424263 1858 ntAPPRIS P3 TSL 2 BASIC20.35■□□□□ 0.85
CBX4O00257 MSLN-201ENST00000382862 2116 ntAPPRIS P3 TSL 5 BASIC20.35■□□□□ 0.85
CBX4O00257 GORASP1-220ENST00000479927 1345 ntTSL 2 BASIC20.35■□□□□ 0.85
CBX4O00257 MAG-202ENST00000392213 2390 ntAPPRIS P4 TSL 1 (best) BASIC20.35■□□□□ 0.85
CBX4O00257 CBLC-201ENST00000270279 1579 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
CBX4O00257 SUMO3-201ENST00000332859 1807 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
CBX4O00257 TDRD10-202ENST00000368482 2331 ntAPPRIS P3 TSL 1 (best) BASIC20.35■□□□□ 0.85
CBX4O00257 BAALC-201ENST00000297574 801 ntTSL 3 BASIC20.35■□□□□ 0.85
CBX4O00257 AC009052.1-201ENST00000567090 298 ntTSL 3 BASIC20.35■□□□□ 0.85
CBX4O00257 GOSR2-208ENST00000573224 1115 ntTSL 5 BASIC20.35■□□□□ 0.85
CBX4O00257 LRRC45-201ENST00000306688 2701 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
CBX4O00257 EED-201ENST00000263360 2223 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
CBX4O00257 RAD23A-203ENST00000586534 1746 ntAPPRIS P3 TSL 1 (best) BASIC20.35■□□□□ 0.85
CBX4O00257 BABAM1-208ENST00000598188 1470 ntAPPRIS P3 TSL 1 (best) BASIC20.35■□□□□ 0.85
CBX4O00257 B4GALNT1-213ENST00000552350 1649 ntTSL 4 BASIC20.35■□□□□ 0.85
CBX4O00257 AL391422.3-201ENST00000603791 2761 ntBASIC20.34■□□□□ 0.85
CBX4O00257 NCLN-205ENST00000590671 2070 ntTSL 2 BASIC20.34■□□□□ 0.85
CBX4O00257 ETV7-206ENST00000615781 1776 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
CBX4O00257 DDX31-206ENST00000480876 1333 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
CBX4O00257 CDKN2B-AS1-217ENST00000585267 1337 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
CBX4O00257 STAU2-229ENST00000524300 3065 ntAPPRIS P4 TSL 2 BASIC20.34■□□□□ 0.85
CBX4O00257 DMAP1-202ENST00000361745 1545 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
CBX4O00257 AFDN-202ENST00000351017 5823 ntTSL 5 BASIC20.34■□□□□ 0.85
CBX4O00257 NMRAL1-213ENST00000574733 1719 ntAPPRIS P1 TSL 5 BASIC20.34■□□□□ 0.85
CBX4O00257 POMC-201ENST00000264708 1074 ntAPPRIS P1 TSL 2 BASIC20.34■□□□□ 0.85
CBX4O00257 F8A2-201ENST00000369505 1116 ntAPPRIS P1 BASIC20.34■□□□□ 0.85
CBX4O00257 MTFP1-203ENST00000407550 912 ntTSL 2 BASIC20.34■□□□□ 0.85
CBX4O00257 AC079145.1-201ENST00000416575 541 ntTSL 2 BASIC20.34■□□□□ 0.85
CBX4O00257 PEX26-203ENST00000428061 815 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
CBX4O00257 TSPAN14-209ENST00000481124 808 ntTSL 2 BASIC20.34■□□□□ 0.85
CBX4O00257 DCAKD-205ENST00000588499 990 ntAPPRIS P1 TSL 2 BASIC20.34■□□□□ 0.85
CBX4O00257 LINC00654-202ENST00000589201 579 ntTSL 3 BASIC20.34■□□□□ 0.85
CBX4O00257 AMER2-202ENST00000515384 3197 ntAPPRIS P1 BASIC20.34■□□□□ 0.85
CBX4O00257 TIMP4-201ENST00000287814 1650 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
CBX4O00257 TREX2-206ENST00000370232 1864 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
CBX4O00257 KMT5B-204ENST00000402185 1881 ntTSL 2 BASIC20.34■□□□□ 0.85
CBX4O00257 PLCL1-201ENST00000428675 5125 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
CBX4O00257 TPCN2-205ENST00000542467 2000 ntTSL 2 BASIC20.34■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 43.4 ms