Protein–RNA interactions for Protein: A6NMZ7

COL6A6, Collagen alpha-6(VI) chain, humanhuman

Predictions only

Length 2,263 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A6A6NMZ7 FOXP4-204ENST00000373063 5910 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
COL6A6A6NMZ7 TCP11-203ENST00000373974 1689 ntAPPRIS ALT2 TSL 2 BASIC18.07■□□□□ 0.48
COL6A6A6NMZ7 NDUFA10-202ENST00000307300 1313 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
COL6A6A6NMZ7 LINC02361-201ENST00000538731 1484 ntTSL 2 BASIC18.07■□□□□ 0.48
COL6A6A6NMZ7 C3orf80-201ENST00000326474 2718 ntAPPRIS P1 BASIC18.06■□□□□ 0.48
COL6A6A6NMZ7 C19orf68-201ENST00000328759 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
COL6A6A6NMZ7 TCEAL2-201ENST00000329035 1080 ntAPPRIS P1 TSL 5 BASIC18.06■□□□□ 0.48
COL6A6A6NMZ7 KRT17P6-201ENST00000453795 1220 ntBASIC18.06■□□□□ 0.48
COL6A6A6NMZ7 TRMT112-203ENST00000535750 823 ntTSL 2 BASIC18.06■□□□□ 0.48
COL6A6A6NMZ7 TARBP2-220ENST00000552857 916 ntTSL 5 BASIC18.06■□□□□ 0.48
COL6A6A6NMZ7 C1QL1P1-201ENST00000568105 661 ntBASIC18.06■□□□□ 0.48
COL6A6A6NMZ7 SLC25A47-202ENST00000557052 1552 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
COL6A6A6NMZ7 NAT6-201ENST00000354862 1330 ntAPPRIS P3 TSL 1 (best) BASIC18.06■□□□□ 0.48
COL6A6A6NMZ7 OGFOD2-222ENST00000545317 1481 ntTSL 2 BASIC18.06■□□□□ 0.48
COL6A6A6NMZ7 GPR108-201ENST00000264080 2057 ntAPPRIS P2 TSL 1 (best) BASIC18.06■□□□□ 0.48
COL6A6A6NMZ7 MADCAM1-203ENST00000382683 603 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
COL6A6A6NMZ7 PLPP5-202ENST00000422581 853 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
COL6A6A6NMZ7 DYNLT3-203ENST00000432389 719 ntTSL 5 BASIC18.06■□□□□ 0.48
COL6A6A6NMZ7 AL162258.2-202ENST00000469931 831 ntTSL 5 BASIC18.06■□□□□ 0.48
COL6A6A6NMZ7 REEP1-207ENST00000535845 1196 ntTSL 2 BASIC18.06■□□□□ 0.48
COL6A6A6NMZ7 AC016582.2-201ENST00000591908 446 ntTSL 3 BASIC18.06■□□□□ 0.48
COL6A6A6NMZ7 TXNL4A-211ENST00000592837 611 ntTSL 2 BASIC18.06■□□□□ 0.48
COL6A6A6NMZ7 Metazoa_SRP.33-201ENST00000613468 285 ntBASIC18.06■□□□□ 0.48
COL6A6A6NMZ7 TERT-206ENST00000508104 2486 ntTSL 5 BASIC18.06■□□□□ 0.48
COL6A6A6NMZ7 BORCS8-MEF2B-202ENST00000444486 1492 ntAPPRIS P2 TSL 2 BASIC18.06■□□□□ 0.48
COL6A6A6NMZ7 SNRPA-201ENST00000243563 1621 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
COL6A6A6NMZ7 GABRD-213ENST00000640067 1632 ntAPPRIS ALT2 TSL 5 BASIC18.06■□□□□ 0.48
COL6A6A6NMZ7 SLC25A51-202ENST00000377716 1691 ntAPPRIS P1 TSL 3 BASIC18.05■□□□□ 0.48
COL6A6A6NMZ7 MAP1LC3A-201ENST00000360668 1574 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
COL6A6A6NMZ7 NTMT1-209ENST00000611055 1562 ntAPPRIS P1 TSL 3 BASIC18.05■□□□□ 0.48
COL6A6A6NMZ7 PSMD6-201ENST00000295901 1430 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
COL6A6A6NMZ7 DBNDD2-203ENST00000372710 1417 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
COL6A6A6NMZ7 TMEM160-201ENST00000253047 663 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
COL6A6A6NMZ7 ROMO1-202ENST00000374072 350 ntTSL 5 BASIC18.05■□□□□ 0.48
COL6A6A6NMZ7 RPUSD3-201ENST00000383820 1225 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
COL6A6A6NMZ7 SUMF2-203ENST00000395435 1287 ntTSL 2 BASIC18.05■□□□□ 0.48
COL6A6A6NMZ7 LINC01786-202ENST00000453732 389 ntTSL 2 BASIC18.05■□□□□ 0.48
COL6A6A6NMZ7 MFSD4A-206ENST00000489709 1136 ntTSL 5 BASIC18.05■□□□□ 0.48
COL6A6A6NMZ7 AC243965.1-201ENST00000557595 781 ntTSL 3 BASIC18.05■□□□□ 0.48
COL6A6A6NMZ7 FNDC10-201ENST00000422725 2085 ntAPPRIS P1 BASIC18.05■□□□□ 0.48
COL6A6A6NMZ7 SUN1-220ENST00000457378 1309 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
COL6A6A6NMZ7 LRRC23-207ENST00000433346 1387 ntTSL 5 BASIC18.05■□□□□ 0.48
COL6A6A6NMZ7 DLL3-202ENST00000356433 2055 ntAPPRIS P1 TSL 2 BASIC18.05■□□□□ 0.48
COL6A6A6NMZ7 PALM-207ENST00000590161 2137 ntTSL 4 BASIC18.05■□□□□ 0.48
COL6A6A6NMZ7 CTU2-202ENST00000453996 1751 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
COL6A6A6NMZ7 PPHLN1-213ENST00000549190 1777 ntTSL 5 BASIC18.05■□□□□ 0.48
COL6A6A6NMZ7 MAEA-208ENST00000505839 1444 ntTSL 2 BASIC18.05■□□□□ 0.48
COL6A6A6NMZ7 DONSON-210ENST00000453626 2332 ntTSL 5 BASIC18.05■□□□□ 0.48
COL6A6A6NMZ7 ZFP69B-204ENST00000484445 1976 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
COL6A6A6NMZ7 KRTAP5-3-201ENST00000399685 899 ntAPPRIS P1 BASIC18.05■□□□□ 0.48
COL6A6A6NMZ7 TRIM73-203ENST00000437796 1169 ntAPPRIS P2 TSL 1 (best) BASIC18.05■□□□□ 0.48
COL6A6A6NMZ7 NOL12-207ENST00000611699 903 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
COL6A6A6NMZ7 PODNL1-203ENST00000538371 1826 ntAPPRIS ALT2 TSL 2 BASIC18.05■□□□□ 0.48
COL6A6A6NMZ7 GOLGA4-208ENST00000444882 1451 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
COL6A6A6NMZ7 PGPEP1L-202ENST00000535714 1483 ntTSL 2 BASIC18.05■□□□□ 0.48
COL6A6A6NMZ7 CALHM3-201ENST00000369783 1652 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
COL6A6A6NMZ7 TRIM3-214ENST00000536344 2704 ntTSL 2 BASIC18.04■□□□□ 0.48
COL6A6A6NMZ7 DCTD-202ENST00000438320 1972 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
COL6A6A6NMZ7 RABEP2-201ENST00000357573 2175 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
COL6A6A6NMZ7 S100A11-201ENST00000271638 594 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
COL6A6A6NMZ7 RTL8A-201ENST00000370775 1244 ntAPPRIS P1 BASIC18.04■□□□□ 0.48
COL6A6A6NMZ7 PLAC8-202ENST00000411416 786 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
COL6A6A6NMZ7 CD70-202ENST00000423145 881 ntTSL 2 BASIC18.04■□□□□ 0.48
COL6A6A6NMZ7 HOMER2P1-201ENST00000455653 964 ntBASIC18.04■□□□□ 0.48
COL6A6A6NMZ7 PDZD7-203ENST00000470414 1057 ntTSL 2 BASIC18.04■□□□□ 0.48
COL6A6A6NMZ7 LRRC75A-AS1-205ENST00000475953 1201 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
COL6A6A6NMZ7 FDX2-206ENST00000492239 773 ntTSL 2 BASIC18.04■□□□□ 0.48
COL6A6A6NMZ7 APBB3-216ENST00000511201 1014 ntTSL 5 BASIC18.04■□□□□ 0.48
COL6A6A6NMZ7 AC008763.3-201ENST00000597959 777 ntAPPRIS P1 TSL 4 BASIC18.04■□□□□ 0.48
COL6A6A6NMZ7 TANGO2-212ENST00000434570 2180 ntTSL 2 BASIC18.04■□□□□ 0.48
COL6A6A6NMZ7 SCRT2-201ENST00000246104 3577 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
COL6A6A6NMZ7 EEFSEC-201ENST00000254730 2232 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
COL6A6A6NMZ7 DNAJC25-201ENST00000313525 2268 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
COL6A6A6NMZ7 SLC25A29-215ENST00000556505 1540 ntTSL 2 BASIC18.04■□□□□ 0.48
COL6A6A6NMZ7 UQCRQ-201ENST00000378665 586 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
COL6A6A6NMZ7 AK2-210ENST00000548033 936 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
COL6A6A6NMZ7 HNRNPM-202ENST00000348943 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
COL6A6A6NMZ7 SIMC1-202ENST00000341199 2056 ntAPPRIS P3 TSL 2 BASIC18.03■□□□□ 0.48
COL6A6A6NMZ7 SYT15-205ENST00000503753 1331 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
COL6A6A6NMZ7 FAM167A-207ENST00000534308 1642 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
COL6A6A6NMZ7 EMD-202ENST00000369842 1379 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
COL6A6A6NMZ7 AC098864.1-205ENST00000315302 2260 ntTSL 2 BASIC18.03■□□□□ 0.48
COL6A6A6NMZ7 CCDC106-207ENST00000591578 1592 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
COL6A6A6NMZ7 TMEM234-202ENST00000344461 721 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
COL6A6A6NMZ7 AP000777.3-201ENST00000538705 491 ntTSL 3 BASIC18.03■□□□□ 0.48
COL6A6A6NMZ7 AC010653.2-201ENST00000623505 997 ntBASIC18.03■□□□□ 0.48
COL6A6A6NMZ7 MFSD10-206ENST00000508221 1639 ntTSL 5 BASIC18.03■□□□□ 0.48
COL6A6A6NMZ7 DDAH2-211ENST00000375787 1330 ntAPPRIS P1 TSL 5 BASIC18.03■□□□□ 0.48
COL6A6A6NMZ7 ADCK2-203ENST00000476491 2092 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
COL6A6A6NMZ7 POMGNT2-201ENST00000344697 2544 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
COL6A6A6NMZ7 ST7L-201ENST00000343210 1866 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
COL6A6A6NMZ7 NECAB3-201ENST00000246190 1989 ntTSL 5 BASIC18.03■□□□□ 0.48
COL6A6A6NMZ7 COX7A1-201ENST00000292907 762 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
COL6A6A6NMZ7 GNG5-202ENST00000370645 790 ntAPPRIS P1 TSL 2 BASIC18.02■□□□□ 0.48
COL6A6A6NMZ7 AC005091.1-201ENST00000441955 1190 ntTSL 3 BASIC18.02■□□□□ 0.48
COL6A6A6NMZ7 TFF3-204ENST00000518498 1109 ntAPPRIS P2 TSL 1 (best) BASIC18.02■□□□□ 0.48
COL6A6A6NMZ7 AC127526.4-201ENST00000527970 983 ntTSL 3 BASIC18.02■□□□□ 0.48
COL6A6A6NMZ7 AP000721.2-201ENST00000537170 650 ntTSL 4 BASIC18.02■□□□□ 0.48
COL6A6A6NMZ7 ISG15-203ENST00000624697 788 ntAPPRIS ALT2 TSL 3 BASIC18.02■□□□□ 0.48
COL6A6A6NMZ7 CALM2-201ENST00000272298 1302 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 22.8 ms