Protein–RNA interactions for Protein: Q9R1C7

Prpf40a, Pre-mRNA-processing factor 40 homolog A, mousemouse

Known RBP Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Prpf40aQ9R1C7 Eed-201ENSMUST00000107234 2067 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
Prpf40aQ9R1C7 4932443I19Rik-201ENSMUST00000166277 799 ntAPPRIS P2 TSL 1 (best) BASIC26.2■■□□□ 1.78
Prpf40aQ9R1C7 Pdss1-201ENSMUST00000053729 1642 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.78
Prpf40aQ9R1C7 Stard3nl-201ENSMUST00000039694 1327 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
Prpf40aQ9R1C7 Cetn4-202ENSMUST00000075537 762 ntTSL 3 BASIC26.18■■□□□ 1.78
Prpf40aQ9R1C7 Pradc1-201ENSMUST00000032080 1038 ntAPPRIS P1 TSL 1 (best) BASIC26.17■■□□□ 1.78
Prpf40aQ9R1C7 Jag2-201ENSMUST00000075827 5106 ntAPPRIS P1 TSL 1 (best) BASIC26.16■■□□□ 1.78
Prpf40aQ9R1C7 Wdr34-201ENSMUST00000113711 1814 ntAPPRIS P1 TSL 1 (best) BASIC26.16■■□□□ 1.78
Prpf40aQ9R1C7 2810459M11Rik-201ENSMUST00000027429 1225 ntAPPRIS ALT2 TSL 1 (best) BASIC26.16■■□□□ 1.78
Prpf40aQ9R1C7 Tm6sf1-201ENSMUST00000041890 2226 ntAPPRIS P1 TSL 1 (best) BASIC26.16■■□□□ 1.78
Prpf40aQ9R1C7 Isoc1-201ENSMUST00000025503 2563 ntAPPRIS P1 TSL 1 (best) BASIC26.15■■□□□ 1.78
Prpf40aQ9R1C7 Zbtb12-201ENSMUST00000052778 1858 ntAPPRIS P1 TSL 1 (best) BASIC26.15■■□□□ 1.78
Prpf40aQ9R1C7 Uba52-205ENSMUST00000129909 705 ntAPPRIS P1 TSL 2 BASIC26.15■■□□□ 1.78
Prpf40aQ9R1C7 Plin1-206ENSMUST00000205915 2817 ntAPPRIS P1 TSL 1 (best) BASIC26.14■■□□□ 1.78
Prpf40aQ9R1C7 Lrfn1-203ENSMUST00000189877 1852 ntAPPRIS P3 TSL 5 BASIC26.14■■□□□ 1.78
Prpf40aQ9R1C7 Ebf4-203ENSMUST00000110288 2982 ntAPPRIS ALT2 TSL 5 BASIC26.13■■□□□ 1.77
Prpf40aQ9R1C7 Scx-201ENSMUST00000043089 1136 ntAPPRIS P1 TSL 1 (best) BASIC26.13■■□□□ 1.77
Prpf40aQ9R1C7 Kansl2-201ENSMUST00000023727 2311 ntAPPRIS ALT2 TSL 5 BASIC26.13■■□□□ 1.77
Prpf40aQ9R1C7 Gpr27-201ENSMUST00000101122 2388 ntAPPRIS P1 BASIC26.12■■□□□ 1.77
Prpf40aQ9R1C7 Itpka-201ENSMUST00000028758 1818 ntAPPRIS P1 TSL 1 (best) BASIC26.12■■□□□ 1.77
Prpf40aQ9R1C7 Gpr137c-205ENSMUST00000227009 771 ntAPPRIS ALT2 BASIC26.12■■□□□ 1.77
Prpf40aQ9R1C7 Cacfd1-204ENSMUST00000114006 1648 ntAPPRIS P1 TSL 1 (best) BASIC26.11■■□□□ 1.77
Prpf40aQ9R1C7 E2f5-202ENSMUST00000165922 1751 ntAPPRIS ALT2 TSL 5 BASIC26.11■■□□□ 1.77
Prpf40aQ9R1C7 Gna13-202ENSMUST00000106702 914 ntTSL 1 (best) BASIC26.11■■□□□ 1.77
Prpf40aQ9R1C7 Clptm1l-201ENSMUST00000022102 2340 ntAPPRIS P1 TSL 1 (best) BASIC26.11■■□□□ 1.77
Prpf40aQ9R1C7 Zswim5-201ENSMUST00000044823 5582 ntAPPRIS P1 TSL 1 (best) BASIC26.11■■□□□ 1.77
Prpf40aQ9R1C7 Bckdhb-206ENSMUST00000190637 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC26.11■■□□□ 1.77
Prpf40aQ9R1C7 Kcna7-201ENSMUST00000107774 2182 ntAPPRIS P1 TSL 1 (best) BASIC26.1■■□□□ 1.77
Prpf40aQ9R1C7 Osbpl1a-209ENSMUST00000122175 1203 ntTSL 1 (best) BASIC26.1■■□□□ 1.77
Prpf40aQ9R1C7 E2f5-201ENSMUST00000029069 1779 ntAPPRIS P2 TSL 1 (best) BASIC26.1■■□□□ 1.77
Prpf40aQ9R1C7 Smurf1-201ENSMUST00000085684 5343 ntAPPRIS P4 TSL 1 (best) BASIC26.1■■□□□ 1.77
Prpf40aQ9R1C7 Fam168b-201ENSMUST00000047534 5030 ntAPPRIS P1 TSL 1 (best) BASIC26.08■■□□□ 1.77
Prpf40aQ9R1C7 Gm12523-201ENSMUST00000148844 599 ntTSL 5 BASIC26.08■■□□□ 1.77
Prpf40aQ9R1C7 Sys1-201ENSMUST00000072452 1606 ntAPPRIS P1 TSL 1 (best) BASIC26.07■■□□□ 1.76
Prpf40aQ9R1C7 Adgrb1-203ENSMUST00000185682 2744 ntTSL 1 (best) BASIC26.07■■□□□ 1.76
Prpf40aQ9R1C7 Bckdhb-201ENSMUST00000034801 1472 ntAPPRIS P3 TSL 1 (best) BASIC26.07■■□□□ 1.76
Prpf40aQ9R1C7 Panx2-202ENSMUST00000161372 2314 ntTSL 1 (best) BASIC26.07■■□□□ 1.76
Prpf40aQ9R1C7 Fam149b-202ENSMUST00000051915 1981 ntAPPRIS ALT2 TSL 5 BASIC26.07■■□□□ 1.76
Prpf40aQ9R1C7 Lmo2-202ENSMUST00000111140 1706 ntTSL 1 (best) BASIC26.06■■□□□ 1.76
Prpf40aQ9R1C7 Gas7-203ENSMUST00000108681 1595 ntAPPRIS ALT2 TSL 5 BASIC26.06■■□□□ 1.76
Prpf40aQ9R1C7 Pcf11-205ENSMUST00000208255 1720 ntBASIC26.05■■□□□ 1.76
Prpf40aQ9R1C7 Gm9887-201ENSMUST00000053451 624 ntAPPRIS P1 BASIC26.04■■□□□ 1.76
Prpf40aQ9R1C7 Ccdc50-202ENSMUST00000096127 1096 ntTSL 1 (best) BASIC26.04■■□□□ 1.76
Prpf40aQ9R1C7 Ryk-201ENSMUST00000035142 2852 ntAPPRIS ALT2 TSL 1 (best) BASIC26.03■■□□□ 1.76
Prpf40aQ9R1C7 Xkr7-201ENSMUST00000037235 2711 ntAPPRIS P1 TSL 1 (best) BASIC26.03■■□□□ 1.76
Prpf40aQ9R1C7 Bcl7b-201ENSMUST00000031692 1758 ntAPPRIS P2 TSL 1 (best) BASIC26.02■■□□□ 1.76
Prpf40aQ9R1C7 Mnx1-201ENSMUST00000001608 2018 ntAPPRIS ALT2 TSL 5 BASIC26.02■■□□□ 1.76
Prpf40aQ9R1C7 Ctbp1-211ENSMUST00000202868 2436 ntAPPRIS ALT1 TSL 1 (best) BASIC26.02■■□□□ 1.76
Prpf40aQ9R1C7 Cops6-202ENSMUST00000110951 1098 ntAPPRIS ALT2 TSL 1 (best) BASIC26.02■■□□□ 1.76
Prpf40aQ9R1C7 E2f6-201ENSMUST00000020908 2418 ntAPPRIS P1 TSL 1 (best) BASIC26.02■■□□□ 1.76
Prpf40aQ9R1C7 Maf-201ENSMUST00000069009 3223 ntAPPRIS ALT2 TSL 1 (best) BASIC26.01■■□□□ 1.75
Prpf40aQ9R1C7 Zfp422-201ENSMUST00000057540 2375 ntAPPRIS P1 TSL 1 (best) BASIC26■■□□□ 1.75
Prpf40aQ9R1C7 Rragc-201ENSMUST00000030399 2593 ntAPPRIS P1 TSL 1 (best) BASIC26■■□□□ 1.75
Prpf40aQ9R1C7 Pcgf5-210ENSMUST00000225411 1626 ntAPPRIS P5 BASIC25.99■■□□□ 1.75
Prpf40aQ9R1C7 Evx2-202ENSMUST00000173623 1428 ntAPPRIS P2 TSL 1 (best) BASIC25.99■■□□□ 1.75
Prpf40aQ9R1C7 Uba52-207ENSMUST00000140679 697 ntAPPRIS P1 TSL 2 BASIC25.97■■□□□ 1.75
Prpf40aQ9R1C7 St7-208ENSMUST00000115419 2194 ntTSL 1 (best) BASIC25.96■■□□□ 1.75
Prpf40aQ9R1C7 Bod1-202ENSMUST00000109415 799 ntAPPRIS P1 TSL 2 BASIC25.96■■□□□ 1.75
Prpf40aQ9R1C7 Maz-204ENSMUST00000206254 2282 ntTSL 5 BASIC25.96■■□□□ 1.75
Prpf40aQ9R1C7 Endog-201ENSMUST00000015481 1063 ntAPPRIS P1 TSL 1 (best) BASIC25.95■■□□□ 1.74
Prpf40aQ9R1C7 Ppp4c-211ENSMUST00000206570 1400 ntAPPRIS P1 TSL 1 (best) BASIC25.95■■□□□ 1.74
Prpf40aQ9R1C7 Cited2-203ENSMUST00000219558 2411 ntAPPRIS P1 BASIC25.95■■□□□ 1.74
Prpf40aQ9R1C7 Zxdc-201ENSMUST00000045740 1612 ntAPPRIS ALT2 TSL 1 (best) BASIC25.94■■□□□ 1.74
Prpf40aQ9R1C7 Eif5a-201ENSMUST00000043419 1437 ntAPPRIS P1 TSL 1 (best) BASIC25.94■■□□□ 1.74
Prpf40aQ9R1C7 Gm9939-201ENSMUST00000067161 1154 ntBASIC25.93■■□□□ 1.74
Prpf40aQ9R1C7 Serpinb6a-201ENSMUST00000017188 1504 ntTSL 1 (best) BASIC25.93■■□□□ 1.74
Prpf40aQ9R1C7 AC163623.1-201ENSMUST00000213738 727 ntAPPRIS P1 TSL 3 BASIC25.91■■□□□ 1.74
Prpf40aQ9R1C7 Cib1-201ENSMUST00000065163 1047 ntAPPRIS P1 TSL 1 (best) BASIC25.91■■□□□ 1.74
Prpf40aQ9R1C7 Nkain2-201ENSMUST00000092602 558 ntBASIC25.91■■□□□ 1.74
Prpf40aQ9R1C7 AC117232.3-201ENSMUST00000217817 338 ntTSL 2 BASIC25.9■■□□□ 1.74
Prpf40aQ9R1C7 Dnajb2-202ENSMUST00000082158 1253 ntAPPRIS P1 TSL 5 BASIC25.9■■□□□ 1.74
Prpf40aQ9R1C7 Aspscr1-202ENSMUST00000103016 1689 ntTSL 5 BASIC25.89■■□□□ 1.73
Prpf40aQ9R1C7 Fus-201ENSMUST00000077609 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC25.88■■□□□ 1.73
Prpf40aQ9R1C7 Gm42809-201ENSMUST00000198429 1138 ntBASIC25.88■■□□□ 1.73
Prpf40aQ9R1C7 Dennd5a-202ENSMUST00000106722 4862 ntTSL 1 (best) BASIC25.88■■□□□ 1.73
Prpf40aQ9R1C7 E2f1-201ENSMUST00000000894 2755 ntAPPRIS ALT2 TSL 1 (best) BASIC25.87■■□□□ 1.73
Prpf40aQ9R1C7 Slc39a13-201ENSMUST00000073575 2469 ntAPPRIS P1 TSL 1 (best) BASIC25.87■■□□□ 1.73
Prpf40aQ9R1C7 Mapk1-203ENSMUST00000115731 1747 ntAPPRIS P1 TSL 1 (best) BASIC25.86■■□□□ 1.73
Prpf40aQ9R1C7 Babam2-209ENSMUST00000201352 1888 ntAPPRIS P1 TSL 1 (best) BASIC25.86■■□□□ 1.73
Prpf40aQ9R1C7 Gm31266-201ENSMUST00000192060 656 ntTSL 5 BASIC25.86■■□□□ 1.73
Prpf40aQ9R1C7 Rnf19b-201ENSMUST00000030584 2414 ntAPPRIS ALT2 TSL 5 BASIC25.85■■□□□ 1.73
Prpf40aQ9R1C7 1810049J17Rik-201ENSMUST00000180521 462 ntAPPRIS P1 BASIC25.85■■□□□ 1.73
Prpf40aQ9R1C7 Maz-201ENSMUST00000032916 2347 ntTSL 1 (best) BASIC25.85■■□□□ 1.73
Prpf40aQ9R1C7 Peg12-201ENSMUST00000094339 2640 ntAPPRIS P1 BASIC25.83■■□□□ 1.73
Prpf40aQ9R1C7 AC153890.1-201ENSMUST00000220021 2469 ntBASIC25.83■■□□□ 1.73
Prpf40aQ9R1C7 Rundc3a-203ENSMUST00000107103 1822 ntTSL 5 BASIC25.83■■□□□ 1.73
Prpf40aQ9R1C7 Lmo4-201ENSMUST00000120539 1669 ntAPPRIS P1 TSL 1 (best) BASIC25.83■■□□□ 1.73
Prpf40aQ9R1C7 Ssbp4-205ENSMUST00000210369 1828 ntTSL 2 BASIC25.82■■□□□ 1.72
Prpf40aQ9R1C7 Gxylt1-202ENSMUST00000057896 1891 ntAPPRIS ALT2 TSL 5 BASIC25.82■■□□□ 1.72
Prpf40aQ9R1C7 Clk2-202ENSMUST00000121212 2154 ntAPPRIS P3 TSL 1 (best) BASIC25.82■■□□□ 1.72
Prpf40aQ9R1C7 Bin1-202ENSMUST00000091967 2118 ntAPPRIS ALT2 TSL 1 (best) BASIC25.81■■□□□ 1.72
Prpf40aQ9R1C7 Gm6821-201ENSMUST00000107540 542 ntBASIC25.81■■□□□ 1.72
Prpf40aQ9R1C7 Csnk1g2-201ENSMUST00000079773 2348 ntTSL 1 (best) BASIC25.8■■□□□ 1.72
Prpf40aQ9R1C7 Sox3-201ENSMUST00000135107 2065 ntAPPRIS P1 BASIC25.8■■□□□ 1.72
Prpf40aQ9R1C7 AY074887-201ENSMUST00000054018 769 ntAPPRIS P1 BASIC25.8■■□□□ 1.72
Prpf40aQ9R1C7 Cpe-201ENSMUST00000048967 2117 ntAPPRIS P1 TSL 1 (best) BASIC25.79■■□□□ 1.72
Prpf40aQ9R1C7 Basp1-201ENSMUST00000058845 1855 ntAPPRIS P1 TSL 1 (best) BASIC25.79■■□□□ 1.72
Prpf40aQ9R1C7 Tsg101-201ENSMUST00000014546 1949 ntAPPRIS P1 TSL 1 (best) BASIC25.79■■□□□ 1.72
Prpf40aQ9R1C7 Ankrd60-202ENSMUST00000119453 1084 ntAPPRIS P2 TSL 2 BASIC25.79■■□□□ 1.72
Prpf40aQ9R1C7 Gm20402-201ENSMUST00000174738 687 ntTSL 3 BASIC25.79■■□□□ 1.72
Retrieved 100 of 76,532 protein–RNA pairs in 16 ms