Protein–RNA interactions for Protein: Q80YF6

Upk3b, Uroplakin-3b, mousemouse

Predictions only

Length 275 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upk3bQ80YF6 Tnfsfm13-203ENSMUST00000180587 2235 ntAPPRIS P3 TSL 2 BASIC20.15■□□□□ 0.82
Upk3bQ80YF6 Snta1-202ENSMUST00000109728 2131 ntAPPRIS P2 TSL 1 (best) BASIC20.14■□□□□ 0.81
Upk3bQ80YF6 Snta1-201ENSMUST00000028991 2125 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.81
Upk3bQ80YF6 Csnk1g2-201ENSMUST00000079773 2348 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
Upk3bQ80YF6 Gm527-201ENSMUST00000058135 1468 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Upk3bQ80YF6 Pcsk1n-201ENSMUST00000041096 2193 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Upk3bQ80YF6 Gm42984-201ENSMUST00000195990 987 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
Upk3bQ80YF6 Rmnd5a-201ENSMUST00000002292 6165 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Upk3bQ80YF6 Thra-202ENSMUST00000103139 2246 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Upk3bQ80YF6 Ablim1-208ENSMUST00000111544 2231 ntTSL 5 BASIC20.11■□□□□ 0.81
Upk3bQ80YF6 Nelfe-204ENSMUST00000173357 1399 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Upk3bQ80YF6 Srcap-211ENSMUST00000189136 1960 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
Upk3bQ80YF6 Sugct-202ENSMUST00000220514 1351 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
Upk3bQ80YF6 Jmy-202ENSMUST00000220513 1843 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
Upk3bQ80YF6 Aard-201ENSMUST00000090025 1348 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Upk3bQ80YF6 Ints11-202ENSMUST00000120794 1884 ntTSL 5 BASIC20.09■□□□□ 0.81
Upk3bQ80YF6 Fcho2-201ENSMUST00000040340 5122 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Upk3bQ80YF6 Efcc1-202ENSMUST00000159570 2293 ntAPPRIS P2 TSL 5 BASIC20.09■□□□□ 0.81
Upk3bQ80YF6 Hook1-201ENSMUST00000030306 5517 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Upk3bQ80YF6 Atp5a1-202ENSMUST00000114748 2674 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
Upk3bQ80YF6 Dnttip1-202ENSMUST00000109326 476 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
Upk3bQ80YF6 Eya2-202ENSMUST00000088132 2447 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
Upk3bQ80YF6 B3gat1-201ENSMUST00000115269 1665 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
Upk3bQ80YF6 Pan3-209ENSMUST00000176600 5541 ntAPPRIS ALT2 TSL 5 BASIC20.07■□□□□ 0.8
Upk3bQ80YF6 Pan3-201ENSMUST00000031651 5048 ntAPPRIS P2 TSL 5 BASIC20.07■□□□□ 0.8
Upk3bQ80YF6 Itpka-201ENSMUST00000028758 1818 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Upk3bQ80YF6 Neurl4-201ENSMUST00000061837 5188 ntAPPRIS P3 TSL 5 BASIC20.06■□□□□ 0.8
Upk3bQ80YF6 Six3-201ENSMUST00000162695 2838 ntAPPRIS ALT2 TSL 5 BASIC20.05■□□□□ 0.8
Upk3bQ80YF6 Hrh3-208ENSMUST00000171736 906 ntTSL 5 BASIC20.05■□□□□ 0.8
Upk3bQ80YF6 E2f5-202ENSMUST00000165922 1751 ntAPPRIS ALT2 TSL 5 BASIC20.05■□□□□ 0.8
Upk3bQ80YF6 Babam2-209ENSMUST00000201352 1888 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Upk3bQ80YF6 Hoxa13-201ENSMUST00000047993 1309 ntAPPRIS ALT2 TSL 5 BASIC20.03■□□□□ 0.8
Upk3bQ80YF6 Junos-204ENSMUST00000128094 830 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
Upk3bQ80YF6 Ctdspl-201ENSMUST00000073109 4589 ntAPPRIS P2 TSL 1 (best) BASIC20.03■□□□□ 0.8
Upk3bQ80YF6 Srp9-201ENSMUST00000027792 1367 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Upk3bQ80YF6 Nelfe-201ENSMUST00000097343 1607 ntAPPRIS P1 TSL 5 BASIC20.02■□□□□ 0.8
Upk3bQ80YF6 Mkrn1-203ENSMUST00000114822 751 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
Upk3bQ80YF6 Cited2-201ENSMUST00000038107 1979 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Upk3bQ80YF6 Yars2-201ENSMUST00000059955 1574 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Upk3bQ80YF6 Gm266-201ENSMUST00000010673 1215 ntAPPRIS P1 BASIC20.01■□□□□ 0.79
Upk3bQ80YF6 Amigo1-203ENSMUST00000106659 1360 ntTSL 1 (best) BASIC20■□□□□ 0.79
Upk3bQ80YF6 Kcnc3-202ENSMUST00000107907 5281 ntAPPRIS P2 TSL 5 BASIC20■□□□□ 0.79
Upk3bQ80YF6 Ube2i-206ENSMUST00000172618 1559 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Upk3bQ80YF6 Yif1b-202ENSMUST00000108237 1086 ntTSL 5 BASIC19.99■□□□□ 0.79
Upk3bQ80YF6 Emid1-201ENSMUST00000062821 1947 ntAPPRIS P2 TSL 1 (best) BASIC19.99■□□□□ 0.79
Upk3bQ80YF6 Ybx3-201ENSMUST00000032309 1853 ntAPPRIS P4 TSL 1 (best) BASIC19.99■□□□□ 0.79
Upk3bQ80YF6 Basp1-201ENSMUST00000058845 1855 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Upk3bQ80YF6 D730045B01Rik-202ENSMUST00000186838 1543 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
Upk3bQ80YF6 Gal3st1-202ENSMUST00000078757 1749 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Upk3bQ80YF6 Vdac1-202ENSMUST00000102758 2022 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Upk3bQ80YF6 Pate2-201ENSMUST00000098906 1690 ntAPPRIS ALT2 TSL 2 BASIC19.97■□□□□ 0.79
Upk3bQ80YF6 Mtch1-202ENSMUST00000118366 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC19.97■□□□□ 0.79
Upk3bQ80YF6 Grin2d-201ENSMUST00000002848 5431 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Upk3bQ80YF6 Fam174a-201ENSMUST00000059975 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Upk3bQ80YF6 Wt1-209ENSMUST00000213301 1554 ntAPPRIS P2 TSL 1 (best) BASIC19.96■□□□□ 0.79
Upk3bQ80YF6 Slc16a11-201ENSMUST00000094055 1788 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Upk3bQ80YF6 AC122428.3-201ENSMUST00000215551 2290 ntBASIC19.96■□□□□ 0.79
Upk3bQ80YF6 Efna3-201ENSMUST00000029673 2363 ntAPPRIS P2 TSL 1 (best) BASIC19.95■□□□□ 0.78
Upk3bQ80YF6 Kras-201ENSMUST00000032399 4678 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Upk3bQ80YF6 Ildr2-206ENSMUST00000194964 2467 ntAPPRIS ALT2 TSL 1 (best) BASIC19.94■□□□□ 0.78
Upk3bQ80YF6 Syndig1l-204ENSMUST00000222422 1758 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Upk3bQ80YF6 Gm15688-201ENSMUST00000161394 2418 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
Upk3bQ80YF6 Fam3c-201ENSMUST00000081288 1487 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
Upk3bQ80YF6 Dazap1-202ENSMUST00000105361 1537 ntAPPRIS ALT1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Upk3bQ80YF6 Arx-202ENSMUST00000113947 2454 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Upk3bQ80YF6 Fgf20-201ENSMUST00000034014 1476 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Upk3bQ80YF6 H2afy-202ENSMUST00000045788 1933 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
Upk3bQ80YF6 Tead1-203ENSMUST00000084705 2543 ntAPPRIS ALT1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Upk3bQ80YF6 Pura-201ENSMUST00000051301 3145 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Upk3bQ80YF6 Nisch-222ENSMUST00000172142 2780 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
Upk3bQ80YF6 Adra1d-201ENSMUST00000103184 1899 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Upk3bQ80YF6 Ccnd3-205ENSMUST00000182209 1977 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Upk3bQ80YF6 St3gal2-202ENSMUST00000117534 2177 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
Upk3bQ80YF6 Cd320-201ENSMUST00000002379 2209 ntAPPRIS P3 TSL 1 (best) BASIC19.9■□□□□ 0.78
Upk3bQ80YF6 Sys1-201ENSMUST00000072452 1606 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Upk3bQ80YF6 Actr3b-202ENSMUST00000128727 2031 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
Upk3bQ80YF6 Lmo2-203ENSMUST00000111143 1654 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
Upk3bQ80YF6 D030046N08Rik-201ENSMUST00000162318 1570 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
Upk3bQ80YF6 Hdac2-201ENSMUST00000019911 2005 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Upk3bQ80YF6 Gm45580-201ENSMUST00000210430 889 ntTSL 5 BASIC19.89■□□□□ 0.77
Upk3bQ80YF6 Fam149b-202ENSMUST00000051915 1981 ntAPPRIS ALT2 TSL 5 BASIC19.89■□□□□ 0.77
Upk3bQ80YF6 Smarcc1-201ENSMUST00000088716 5717 ntAPPRIS P2 TSL 1 (best) BASIC19.89■□□□□ 0.77
Upk3bQ80YF6 Ccdc122-202ENSMUST00000095625 1195 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.77
Upk3bQ80YF6 Cpsf4-201ENSMUST00000070487 1606 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
Upk3bQ80YF6 Tgfbrap1-202ENSMUST00000186694 5385 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Upk3bQ80YF6 P3h4-201ENSMUST00000066489 2178 ntAPPRIS P2 TSL 1 (best) BASIC19.88■□□□□ 0.77
Upk3bQ80YF6 Pou4f1-201ENSMUST00000053016 4445 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Upk3bQ80YF6 Ccna1-202ENSMUST00000197238 1719 ntAPPRIS P1 TSL 5 BASIC19.88■□□□□ 0.77
Upk3bQ80YF6 Hoxd9-201ENSMUST00000059272 2136 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Upk3bQ80YF6 Deaf1-201ENSMUST00000080553 2135 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Upk3bQ80YF6 Fam60a-203ENSMUST00000111562 906 ntAPPRIS P1 TSL 3 BASIC19.87■□□□□ 0.77
Upk3bQ80YF6 Tmeff1-202ENSMUST00000123476 1224 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Upk3bQ80YF6 Prr3-201ENSMUST00000055454 2727 ntAPPRIS P3 TSL 1 (best) BASIC19.87■□□□□ 0.77
Upk3bQ80YF6 Fbxo6-201ENSMUST00000030858 1346 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Upk3bQ80YF6 Mta3-201ENSMUST00000067826 2087 ntAPPRIS P3 TSL 1 (best) BASIC19.86■□□□□ 0.77
Upk3bQ80YF6 Shf-203ENSMUST00000110531 1557 ntAPPRIS P2 TSL 5 BASIC19.86■□□□□ 0.77
Upk3bQ80YF6 Mypop-201ENSMUST00000059331 2173 ntAPPRIS P1 TSL 5 BASIC19.85■□□□□ 0.77
Upk3bQ80YF6 Slc22a17-201ENSMUST00000050772 2290 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
Upk3bQ80YF6 Il3ra-201ENSMUST00000090591 1614 ntAPPRIS P2 TSL 1 (best) BASIC19.85■□□□□ 0.77
Upk3bQ80YF6 Grin2d-203ENSMUST00000211713 5244 ntAPPRIS P1 TSL 5 BASIC19.84■□□□□ 0.77
Retrieved 100 of 76,532 protein–RNA pairs in 15.8 ms