Protein–RNA interactions for Protein: Q6T3U4

Npc1l1, Niemann-Pick C1-like protein 1, mousemouse

Predictions only

Length 1,333 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Npc1l1Q6T3U4 Cacfd1-204ENSMUST00000114006 1648 ntAPPRIS P1 TSL 1 (best) BASIC29.2■■■□□ 2.26
Npc1l1Q6T3U4 Fam196a-201ENSMUST00000171394 2490 ntAPPRIS P1 TSL 5 BASIC29.18■■■□□ 2.26
Npc1l1Q6T3U4 1110065P20Rik-201ENSMUST00000106190 968 ntAPPRIS P1 TSL 2 BASIC29.18■■■□□ 2.26
Npc1l1Q6T3U4 Pcf11-205ENSMUST00000208255 1720 ntBASIC29.18■■■□□ 2.26
Npc1l1Q6T3U4 Lmo2-202ENSMUST00000111140 1706 ntTSL 1 (best) BASIC29.17■■■□□ 2.26
Npc1l1Q6T3U4 Ankrd60-202ENSMUST00000119453 1084 ntAPPRIS P2 TSL 2 BASIC29.17■■■□□ 2.26
Npc1l1Q6T3U4 Gas7-203ENSMUST00000108681 1595 ntAPPRIS ALT2 TSL 5 BASIC29.16■■■□□ 2.26
Npc1l1Q6T3U4 Sys1-201ENSMUST00000072452 1606 ntAPPRIS P1 TSL 1 (best) BASIC29.16■■■□□ 2.26
Npc1l1Q6T3U4 Ppa2-201ENSMUST00000029644 1226 ntAPPRIS P3 TSL 1 (best) BASIC29.16■■■□□ 2.26
Npc1l1Q6T3U4 Gm28052-201ENSMUST00000150388 380 ntTSL 3 BASIC29.15■■■□□ 2.26
Npc1l1Q6T3U4 Gsk3a-201ENSMUST00000071739 2260 ntAPPRIS P2 TSL 2 BASIC29.14■■■□□ 2.26
Npc1l1Q6T3U4 Flt3l-211ENSMUST00000211429 1358 ntAPPRIS ALT2 TSL 1 (best) BASIC29.13■■■□□ 2.25
Npc1l1Q6T3U4 Zxdc-201ENSMUST00000045740 1612 ntAPPRIS ALT2 TSL 1 (best) BASIC29.11■■■□□ 2.25
Npc1l1Q6T3U4 Rundc3a-203ENSMUST00000107103 1822 ntTSL 5 BASIC29.11■■■□□ 2.25
Npc1l1Q6T3U4 Pcbd2-201ENSMUST00000021958 544 ntTSL 1 (best) BASIC29.11■■■□□ 2.25
Npc1l1Q6T3U4 Rbmxl2-201ENSMUST00000098135 1472 ntAPPRIS P1 BASIC29.1■■■□□ 2.25
Npc1l1Q6T3U4 Gm28592-201ENSMUST00000186844 741 ntTSL 5 BASIC29.1■■■□□ 2.25
Npc1l1Q6T3U4 Ssx2ip-202ENSMUST00000106149 2416 ntAPPRIS ALT2 TSL 1 (best) BASIC29.1■■■□□ 2.25
Npc1l1Q6T3U4 Bcl7b-202ENSMUST00000111187 564 ntTSL 1 (best) BASIC29.08■■■□□ 2.25
Npc1l1Q6T3U4 Tmbim4-204ENSMUST00000134797 486 ntTSL 1 (best) BASIC29.08■■■□□ 2.25
Npc1l1Q6T3U4 A030003K21Rik-201ENSMUST00000222600 830 ntAPPRIS P1 BASIC29.08■■■□□ 2.25
Npc1l1Q6T3U4 Mpp6-202ENSMUST00000036236 2161 ntAPPRIS P1 TSL 1 (best) BASIC29.07■■■□□ 2.24
Npc1l1Q6T3U4 Hmgn3-202ENSMUST00000162246 983 ntAPPRIS P4 TSL 1 (best) BASIC29.07■■■□□ 2.24
Npc1l1Q6T3U4 Kdm2a-203ENSMUST00000116571 2413 ntTSL 1 (best) BASIC29.06■■■□□ 2.24
Npc1l1Q6T3U4 Zfp131-206ENSMUST00000223813 2561 ntAPPRIS P3 BASIC29.05■■■□□ 2.24
Npc1l1Q6T3U4 Amer2-203ENSMUST00000225247 2662 ntBASIC29.05■■■□□ 2.24
Npc1l1Q6T3U4 Gm11599-201ENSMUST00000118720 878 ntBASIC29.05■■■□□ 2.24
Npc1l1Q6T3U4 Mxd4-202ENSMUST00000119171 1160 ntTSL 1 (best) BASIC29.03■■■□□ 2.24
Npc1l1Q6T3U4 Lrfn1-203ENSMUST00000189877 1852 ntAPPRIS P3 TSL 5 BASIC29.03■■■□□ 2.24
Npc1l1Q6T3U4 St7-202ENSMUST00000052113 2046 ntAPPRIS P1 TSL 1 (best) BASIC29.02■■■□□ 2.24
Npc1l1Q6T3U4 Mapkap1-201ENSMUST00000113123 1530 ntTSL 5 BASIC29.01■■■□□ 2.23
Npc1l1Q6T3U4 Irx4-201ENSMUST00000022095 2589 ntAPPRIS P1 TSL 1 (best) BASIC29.01■■■□□ 2.23
Npc1l1Q6T3U4 Gm960-202ENSMUST00000177696 2262 ntAPPRIS P2 TSL 5 BASIC29■■■□□ 2.23
Npc1l1Q6T3U4 Snrpe-202ENSMUST00000164574 597 ntTSL 3 BASIC29■■■□□ 2.23
Npc1l1Q6T3U4 Tmem189-201ENSMUST00000006587 2329 ntAPPRIS P1 TSL 1 (best) BASIC29■■■□□ 2.23
Npc1l1Q6T3U4 Pm20d2-202ENSMUST00000119167 1339 ntTSL 1 (best) BASIC29■■■□□ 2.23
Npc1l1Q6T3U4 Mypop-203ENSMUST00000131087 1951 ntAPPRIS P1 TSL 5 BASIC29■■■□□ 2.23
Npc1l1Q6T3U4 Gm19582-201ENSMUST00000187511 841 ntTSL 2 BASIC28.99■■■□□ 2.23
Npc1l1Q6T3U4 Rexo2-210ENSMUST00000217037 609 ntTSL 3 BASIC28.99■■■□□ 2.23
Npc1l1Q6T3U4 6330420H09Rik-201ENSMUST00000211371 1316 ntTSL 1 (best) BASIC28.99■■■□□ 2.23
Npc1l1Q6T3U4 Snx3-203ENSMUST00000105500 753 ntTSL 5 BASIC28.98■■■□□ 2.23
Npc1l1Q6T3U4 1810049J17Rik-201ENSMUST00000180521 462 ntAPPRIS P1 BASIC28.98■■■□□ 2.23
Npc1l1Q6T3U4 Ell2-205ENSMUST00000222194 434 ntTSL 3 BASIC28.98■■■□□ 2.23
Npc1l1Q6T3U4 Asf1a-205ENSMUST00000219282 1150 ntTSL 5 BASIC28.97■■■□□ 2.23
Npc1l1Q6T3U4 Tsen34-211ENSMUST00000205287 1375 ntTSL 5 BASIC28.97■■■□□ 2.23
Npc1l1Q6T3U4 Babam2-209ENSMUST00000201352 1888 ntAPPRIS P1 TSL 1 (best) BASIC28.97■■■□□ 2.23
Npc1l1Q6T3U4 Hdgf-201ENSMUST00000005017 2245 ntAPPRIS P1 TSL 1 (best) BASIC28.97■■■□□ 2.23
Npc1l1Q6T3U4 Gsk3a-202ENSMUST00000108411 2248 ntAPPRIS ALT2 TSL 5 BASIC28.95■■■□□ 2.22
Npc1l1Q6T3U4 Nr2f6-201ENSMUST00000002466 2218 ntAPPRIS P1 TSL 1 (best) BASIC28.95■■■□□ 2.22
Npc1l1Q6T3U4 Lmo4-201ENSMUST00000120539 1669 ntAPPRIS P1 TSL 1 (best) BASIC28.95■■■□□ 2.22
Npc1l1Q6T3U4 Aspscr1-202ENSMUST00000103016 1689 ntTSL 5 BASIC28.94■■■□□ 2.22
Npc1l1Q6T3U4 Pard6a-203ENSMUST00000211888 1179 ntTSL 1 (best) BASIC28.94■■■□□ 2.22
Npc1l1Q6T3U4 Grb2-202ENSMUST00000106495 2041 ntTSL 5 BASIC28.93■■■□□ 2.22
Npc1l1Q6T3U4 Klhl35-201ENSMUST00000037359 1954 ntAPPRIS P1 TSL 1 (best) BASIC28.93■■■□□ 2.22
Npc1l1Q6T3U4 Tmem200b-201ENSMUST00000094666 1370 ntAPPRIS P1 BASIC28.93■■■□□ 2.22
Npc1l1Q6T3U4 Eed-201ENSMUST00000107234 2067 ntAPPRIS P1 TSL 1 (best) BASIC28.92■■■□□ 2.22
Npc1l1Q6T3U4 E130102H24Rik-201ENSMUST00000144604 741 ntTSL 1 (best) BASIC28.92■■■□□ 2.22
Npc1l1Q6T3U4 C2cd4b-201ENSMUST00000171652 1327 ntAPPRIS P1 TSL 1 (best) BASIC28.91■■■□□ 2.22
Npc1l1Q6T3U4 1110008P14Rik-201ENSMUST00000048792 680 ntAPPRIS P1 TSL 1 (best) BASIC28.9■■■□□ 2.22
Npc1l1Q6T3U4 Acvr2b-202ENSMUST00000165044 2093 ntTSL 2 BASIC28.9■■■□□ 2.22
Npc1l1Q6T3U4 Gm30023-201ENSMUST00000197970 889 ntBASIC28.89■■■□□ 2.21
Npc1l1Q6T3U4 Pcgf5-210ENSMUST00000225411 1626 ntAPPRIS P5 BASIC28.88■■■□□ 2.21
Npc1l1Q6T3U4 Dbp-204ENSMUST00000211513 1156 ntTSL 5 BASIC28.88■■■□□ 2.21
Npc1l1Q6T3U4 Det1-201ENSMUST00000032839 2269 ntAPPRIS P1 TSL 1 (best) BASIC28.87■■■□□ 2.21
Npc1l1Q6T3U4 B230208H11Rik-201ENSMUST00000180529 1112 ntTSL 1 (best) BASIC28.86■■■□□ 2.21
Npc1l1Q6T3U4 Gm27021-201ENSMUST00000181333 758 ntAPPRIS P1 TSL 4 BASIC28.86■■■□□ 2.21
Npc1l1Q6T3U4 Rab43-202ENSMUST00000032135 1262 ntTSL 1 (best) BASIC28.84■■■□□ 2.21
Npc1l1Q6T3U4 Basp1-201ENSMUST00000058845 1855 ntAPPRIS P1 TSL 1 (best) BASIC28.84■■■□□ 2.21
Npc1l1Q6T3U4 Nelfe-201ENSMUST00000097343 1607 ntAPPRIS P1 TSL 5 BASIC28.83■■■□□ 2.21
Npc1l1Q6T3U4 Otulin-201ENSMUST00000059662 1491 ntAPPRIS P1 TSL 1 (best) BASIC28.83■■■□□ 2.21
Npc1l1Q6T3U4 Gm13889-202ENSMUST00000148314 1240 ntAPPRIS P1 BASIC28.82■■■□□ 2.2
Npc1l1Q6T3U4 Ccnd3-205ENSMUST00000182209 1977 ntAPPRIS P1 TSL 1 (best) BASIC28.81■■■□□ 2.2
Npc1l1Q6T3U4 Rpl31-203ENSMUST00000179954 630 ntAPPRIS P1 TSL 1 (best) BASIC28.81■■■□□ 2.2
Npc1l1Q6T3U4 Arf6-201ENSMUST00000050063 1534 ntAPPRIS P1 TSL 1 (best) BASIC28.81■■■□□ 2.2
Npc1l1Q6T3U4 Ccdc122-201ENSMUST00000048208 1721 ntAPPRIS P3 TSL 1 (best) BASIC28.81■■■□□ 2.2
Npc1l1Q6T3U4 Fam89b-202ENSMUST00000116558 1189 ntTSL 1 (best) BASIC28.8■■■□□ 2.2
Npc1l1Q6T3U4 Zbtb12-201ENSMUST00000052778 1858 ntAPPRIS P1 TSL 1 (best) BASIC28.8■■■□□ 2.2
Npc1l1Q6T3U4 Fank1-204ENSMUST00000209511 1392 ntTSL 5 BASIC28.79■■■□□ 2.2
Npc1l1Q6T3U4 Sntb1-202ENSMUST00000110200 1225 ntTSL 1 (best) BASIC28.79■■■□□ 2.2
Npc1l1Q6T3U4 Gm11175-201ENSMUST00000116172 543 ntBASIC28.79■■■□□ 2.2
Npc1l1Q6T3U4 E2f5-201ENSMUST00000029069 1779 ntAPPRIS P2 TSL 1 (best) BASIC28.79■■■□□ 2.2
Npc1l1Q6T3U4 Pard6a-201ENSMUST00000093195 1265 ntAPPRIS P3 TSL 1 (best) BASIC28.78■■■□□ 2.2
Npc1l1Q6T3U4 Mospd3-201ENSMUST00000037620 1456 ntAPPRIS P1 TSL 1 (best) BASIC28.78■■■□□ 2.2
Npc1l1Q6T3U4 Hmx3-201ENSMUST00000046093 1457 ntAPPRIS P1 TSL 1 (best) BASIC28.77■■■□□ 2.2
Npc1l1Q6T3U4 Lmo2-203ENSMUST00000111143 1654 ntTSL 1 (best) BASIC28.77■■■□□ 2.2
Npc1l1Q6T3U4 Cdkn2b-201ENSMUST00000097981 1393 ntAPPRIS P1 TSL 1 (best) BASIC28.77■■■□□ 2.2
Npc1l1Q6T3U4 C130046K22Rik-201ENSMUST00000129780 727 ntTSL 5 BASIC28.76■■■□□ 2.19
Npc1l1Q6T3U4 Mtor-201ENSMUST00000057580 1003 ntTSL 1 (best) BASIC28.76■■■□□ 2.19
Npc1l1Q6T3U4 Wt1-209ENSMUST00000213301 1554 ntAPPRIS P2 TSL 1 (best) BASIC28.76■■■□□ 2.19
Npc1l1Q6T3U4 Cdc14b-207ENSMUST00000221634 1953 ntAPPRIS ALT2 TSL 1 (best) BASIC28.76■■■□□ 2.19
Npc1l1Q6T3U4 Map2k7-207ENSMUST00000110999 1578 ntTSL 1 (best) BASIC28.75■■■□□ 2.19
Npc1l1Q6T3U4 Mtch1-202ENSMUST00000118366 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC28.75■■■□□ 2.19
Npc1l1Q6T3U4 Eci1-201ENSMUST00000024946 1091 ntAPPRIS P1 TSL 1 (best) BASIC28.74■■■□□ 2.19
Npc1l1Q6T3U4 Mapk1-203ENSMUST00000115731 1747 ntAPPRIS P1 TSL 1 (best) BASIC28.74■■■□□ 2.19
Npc1l1Q6T3U4 Wdr34-201ENSMUST00000113711 1814 ntAPPRIS P1 TSL 1 (best) BASIC28.74■■■□□ 2.19
Npc1l1Q6T3U4 Mogs-201ENSMUST00000032114 2780 ntAPPRIS P1 TSL 1 (best) BASIC28.73■■■□□ 2.19
Npc1l1Q6T3U4 Gas1-202ENSMUST00000223933 1155 ntAPPRIS P2 BASIC28.73■■■□□ 2.19
Npc1l1Q6T3U4 Rtn2-201ENSMUST00000032559 1990 ntAPPRIS P3 TSL 1 (best) BASIC28.73■■■□□ 2.19
Npc1l1Q6T3U4 Dtnb-203ENSMUST00000164578 2355 ntTSL 1 (best) BASIC28.73■■■□□ 2.19
Npc1l1Q6T3U4 Cys1-203ENSMUST00000156453 1732 ntAPPRIS P1 TSL 2 BASIC28.73■■■□□ 2.19
Retrieved 100 of 76,532 protein–RNA pairs in 18 ms