Protein–RNA interactions for Protein: Q6PGB8

Smarca1, Probable global transcription activator SNF2L1, mousemouse

Predictions only

Length 1,046 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smarca1Q6PGB8 Gm6821-201ENSMUST00000107540 542 ntBASIC26.77■■□□□ 1.88
Smarca1Q6PGB8 Ebf4-203ENSMUST00000110288 2982 ntAPPRIS ALT2 TSL 5 BASIC26.76■■□□□ 1.88
Smarca1Q6PGB8 Msi2-202ENSMUST00000107908 695 ntTSL 5 BASIC26.76■■□□□ 1.87
Smarca1Q6PGB8 Xkr7-201ENSMUST00000037235 2711 ntAPPRIS P1 TSL 1 (best) BASIC26.76■■□□□ 1.87
Smarca1Q6PGB8 Panx2-202ENSMUST00000161372 2314 ntTSL 1 (best) BASIC26.76■■□□□ 1.87
Smarca1Q6PGB8 Cops6-202ENSMUST00000110951 1098 ntAPPRIS ALT2 TSL 1 (best) BASIC26.75■■□□□ 1.87
Smarca1Q6PGB8 E2f6-201ENSMUST00000020908 2418 ntAPPRIS P1 TSL 1 (best) BASIC26.74■■□□□ 1.87
Smarca1Q6PGB8 Gm29254-202ENSMUST00000189302 883 ntTSL 1 (best) BASIC26.74■■□□□ 1.87
Smarca1Q6PGB8 Gm42809-201ENSMUST00000198429 1138 ntBASIC26.73■■□□□ 1.87
Smarca1Q6PGB8 Lmo2-202ENSMUST00000111140 1706 ntTSL 1 (best) BASIC26.73■■□□□ 1.87
Smarca1Q6PGB8 E2f5-201ENSMUST00000029069 1779 ntAPPRIS P2 TSL 1 (best) BASIC26.72■■□□□ 1.87
Smarca1Q6PGB8 Zfp422-201ENSMUST00000057540 2375 ntAPPRIS P1 TSL 1 (best) BASIC26.72■■□□□ 1.87
Smarca1Q6PGB8 P2rx2-205ENSMUST00000200037 1569 ntAPPRIS ALT2 TSL 1 (best) BASIC26.71■■□□□ 1.87
Smarca1Q6PGB8 Tceal5-201ENSMUST00000066819 1044 ntAPPRIS P1 TSL 1 (best) BASIC26.71■■□□□ 1.87
Smarca1Q6PGB8 Ctbp1-211ENSMUST00000202868 2436 ntAPPRIS ALT1 TSL 1 (best) BASIC26.71■■□□□ 1.87
Smarca1Q6PGB8 Pcf11-205ENSMUST00000208255 1720 ntBASIC26.7■■□□□ 1.87
Smarca1Q6PGB8 Ube2e2-205ENSMUST00000150727 1523 ntAPPRIS P1 TSL 1 (best) BASIC26.7■■□□□ 1.87
Smarca1Q6PGB8 Osbpl1a-209ENSMUST00000122175 1203 ntTSL 1 (best) BASIC26.7■■□□□ 1.86
Smarca1Q6PGB8 Maf-201ENSMUST00000069009 3223 ntAPPRIS ALT2 TSL 1 (best) BASIC26.7■■□□□ 1.86
Smarca1Q6PGB8 Adgrb2-207ENSMUST00000120204 5170 ntAPPRIS ALT2 TSL 1 (best) BASIC26.69■■□□□ 1.86
Smarca1Q6PGB8 Mnx1-201ENSMUST00000001608 2018 ntAPPRIS ALT2 TSL 5 BASIC26.69■■□□□ 1.86
Smarca1Q6PGB8 Gm31266-201ENSMUST00000192060 656 ntTSL 5 BASIC26.69■■□□□ 1.86
Smarca1Q6PGB8 Kcmf1-204ENSMUST00000204598 1743 ntTSL 1 (best) BASIC26.69■■□□□ 1.86
Smarca1Q6PGB8 Slc35a3-202ENSMUST00000120120 1791 ntAPPRIS P1 TSL 1 (best) BASIC26.68■■□□□ 1.86
Smarca1Q6PGB8 Stard10-202ENSMUST00000163799 1723 ntTSL 1 (best) BASIC26.68■■□□□ 1.86
Smarca1Q6PGB8 Zfyve21-201ENSMUST00000021714 1308 ntAPPRIS P2 TSL 1 (best) BASIC26.67■■□□□ 1.86
Smarca1Q6PGB8 Bcl7b-201ENSMUST00000031692 1758 ntAPPRIS P2 TSL 1 (best) BASIC26.67■■□□□ 1.86
Smarca1Q6PGB8 Naa20-201ENSMUST00000002805 1172 ntTSL 1 (best) BASIC26.67■■□□□ 1.86
Smarca1Q6PGB8 Cited2-203ENSMUST00000219558 2411 ntAPPRIS P1 BASIC26.66■■□□□ 1.86
Smarca1Q6PGB8 Gpr137c-205ENSMUST00000227009 771 ntAPPRIS ALT2 BASIC26.66■■□□□ 1.86
Smarca1Q6PGB8 Dnajb2-202ENSMUST00000082158 1253 ntAPPRIS P1 TSL 5 BASIC26.66■■□□□ 1.86
Smarca1Q6PGB8 Nkain2-201ENSMUST00000092602 558 ntBASIC26.66■■□□□ 1.86
Smarca1Q6PGB8 Ppp4c-211ENSMUST00000206570 1400 ntAPPRIS P1 TSL 1 (best) BASIC26.65■■□□□ 1.86
Smarca1Q6PGB8 AC163623.1-201ENSMUST00000213738 727 ntAPPRIS P1 TSL 3 BASIC26.65■■□□□ 1.86
Smarca1Q6PGB8 St7-208ENSMUST00000115419 2194 ntTSL 1 (best) BASIC26.65■■□□□ 1.86
Smarca1Q6PGB8 Maz-204ENSMUST00000206254 2282 ntTSL 5 BASIC26.64■■□□□ 1.86
Smarca1Q6PGB8 4930542C12Rik-201ENSMUST00000171096 1203 ntBASIC26.64■■□□□ 1.86
Smarca1Q6PGB8 Yrdc-201ENSMUST00000102628 1634 ntAPPRIS P1 TSL 1 (best) BASIC26.64■■□□□ 1.85
Smarca1Q6PGB8 Hsd17b11-201ENSMUST00000031251 1825 ntAPPRIS P1 TSL 1 (best) BASIC26.63■■□□□ 1.85
Smarca1Q6PGB8 Gskip-202ENSMUST00000222284 1064 ntTSL 1 (best) BASIC26.63■■□□□ 1.85
Smarca1Q6PGB8 Ccdc50-202ENSMUST00000096127 1096 ntTSL 1 (best) BASIC26.63■■□□□ 1.85
Smarca1Q6PGB8 Endog-201ENSMUST00000015481 1063 ntAPPRIS P1 TSL 1 (best) BASIC26.62■■□□□ 1.85
Smarca1Q6PGB8 Bckdhb-201ENSMUST00000034801 1472 ntAPPRIS P3 TSL 1 (best) BASIC26.62■■□□□ 1.85
Smarca1Q6PGB8 Cacfd1-204ENSMUST00000114006 1648 ntAPPRIS P1 TSL 1 (best) BASIC26.61■■□□□ 1.85
Smarca1Q6PGB8 Pcgf5-210ENSMUST00000225411 1626 ntAPPRIS P5 BASIC26.61■■□□□ 1.85
Smarca1Q6PGB8 E2f1-201ENSMUST00000000894 2755 ntAPPRIS ALT2 TSL 1 (best) BASIC26.61■■□□□ 1.85
Smarca1Q6PGB8 Syndig1l-204ENSMUST00000222422 1758 ntAPPRIS P1 TSL 1 (best) BASIC26.59■■□□□ 1.85
Smarca1Q6PGB8 Gm20402-201ENSMUST00000174738 687 ntTSL 3 BASIC26.59■■□□□ 1.85
Smarca1Q6PGB8 Gna13-202ENSMUST00000106702 914 ntTSL 1 (best) BASIC26.58■■□□□ 1.85
Smarca1Q6PGB8 Gm9887-201ENSMUST00000053451 624 ntAPPRIS P1 BASIC26.57■■□□□ 1.84
Smarca1Q6PGB8 AC153890.1-201ENSMUST00000220021 2469 ntBASIC26.56■■□□□ 1.84
Smarca1Q6PGB8 Pdss1-201ENSMUST00000053729 1642 ntAPPRIS P1 TSL 1 (best) BASIC26.56■■□□□ 1.84
Smarca1Q6PGB8 Peg12-201ENSMUST00000094339 2640 ntAPPRIS P1 BASIC26.56■■□□□ 1.84
Smarca1Q6PGB8 Rnf19b-201ENSMUST00000030584 2414 ntAPPRIS ALT2 TSL 5 BASIC26.56■■□□□ 1.84
Smarca1Q6PGB8 Slc39a13-201ENSMUST00000073575 2469 ntAPPRIS P1 TSL 1 (best) BASIC26.56■■□□□ 1.84
Smarca1Q6PGB8 Fus-201ENSMUST00000077609 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC26.53■■□□□ 1.84
Smarca1Q6PGB8 Kras-207ENSMUST00000203147 817 ntTSL 5 BASIC26.53■■□□□ 1.84
Smarca1Q6PGB8 Zxdb-201ENSMUST00000101388 5619 ntAPPRIS P1 BASIC26.53■■□□□ 1.84
Smarca1Q6PGB8 Yars2-201ENSMUST00000059955 1574 ntAPPRIS P1 TSL 1 (best) BASIC26.53■■□□□ 1.84
Smarca1Q6PGB8 Serpinb6a-201ENSMUST00000017188 1504 ntTSL 1 (best) BASIC26.52■■□□□ 1.84
Smarca1Q6PGB8 Gm5987-201ENSMUST00000196433 1151 ntBASIC26.52■■□□□ 1.84
Smarca1Q6PGB8 Maz-201ENSMUST00000032916 2347 ntTSL 1 (best) BASIC26.51■■□□□ 1.84
Smarca1Q6PGB8 Mapk1-203ENSMUST00000115731 1747 ntAPPRIS P1 TSL 1 (best) BASIC26.51■■□□□ 1.83
Smarca1Q6PGB8 Fam3c-201ENSMUST00000081288 1487 ntTSL 1 (best) BASIC26.51■■□□□ 1.83
Smarca1Q6PGB8 Csnk1g2-201ENSMUST00000079773 2348 ntTSL 1 (best) BASIC26.5■■□□□ 1.83
Smarca1Q6PGB8 Glrx2-205ENSMUST00000145571 758 ntTSL 2 BASIC26.5■■□□□ 1.83
Smarca1Q6PGB8 Bin1-202ENSMUST00000091967 2118 ntAPPRIS ALT2 TSL 1 (best) BASIC26.49■■□□□ 1.83
Smarca1Q6PGB8 Clk2-202ENSMUST00000121212 2154 ntAPPRIS P3 TSL 1 (best) BASIC26.48■■□□□ 1.83
Smarca1Q6PGB8 Rragc-201ENSMUST00000030399 2593 ntAPPRIS P1 TSL 1 (best) BASIC26.48■■□□□ 1.83
Smarca1Q6PGB8 Gm2018-201ENSMUST00000140754 478 ntTSL 2 BASIC26.48■■□□□ 1.83
Smarca1Q6PGB8 Guk1-204ENSMUST00000170202 1078 ntAPPRIS P1 TSL 1 (best) BASIC26.48■■□□□ 1.83
Smarca1Q6PGB8 Gxylt1-202ENSMUST00000057896 1891 ntAPPRIS ALT2 TSL 5 BASIC26.48■■□□□ 1.83
Smarca1Q6PGB8 Gm11529-201ENSMUST00000153012 639 ntTSL 1 (best) BASIC26.47■■□□□ 1.83
Smarca1Q6PGB8 Ablim1-208ENSMUST00000111544 2231 ntTSL 5 BASIC26.47■■□□□ 1.83
Smarca1Q6PGB8 Phlda3-201ENSMUST00000038945 1435 ntAPPRIS P1 TSL 1 (best) BASIC26.47■■□□□ 1.83
Smarca1Q6PGB8 Cpe-201ENSMUST00000048967 2117 ntAPPRIS P1 TSL 1 (best) BASIC26.47■■□□□ 1.83
Smarca1Q6PGB8 Anapc11-202ENSMUST00000093140 962 ntAPPRIS P1 TSL 1 (best) BASIC26.46■■□□□ 1.83
Smarca1Q6PGB8 Otud5-205ENSMUST00000115668 2543 ntTSL 1 (best) BASIC26.46■■□□□ 1.83
Smarca1Q6PGB8 Mpp6-209ENSMUST00000204545 2418 ntAPPRIS P1 TSL 5 BASIC26.46■■□□□ 1.83
Smarca1Q6PGB8 Plin1-206ENSMUST00000205915 2817 ntAPPRIS P1 TSL 1 (best) BASIC26.46■■□□□ 1.83
Smarca1Q6PGB8 Arhgdia-201ENSMUST00000067936 2150 ntAPPRIS P1 TSL 1 (best) BASIC26.46■■□□□ 1.83
Smarca1Q6PGB8 Smarcad1-211ENSMUST00000204696 734 ntTSL 1 (best) BASIC26.45■■□□□ 1.82
Smarca1Q6PGB8 AC117232.3-201ENSMUST00000217817 338 ntTSL 2 BASIC26.45■■□□□ 1.82
Smarca1Q6PGB8 Gm960-204ENSMUST00000225896 2202 ntAPPRIS ALT2 BASIC26.45■■□□□ 1.82
Smarca1Q6PGB8 Paqr3-202ENSMUST00000112968 1875 ntTSL 1 (best) BASIC26.45■■□□□ 1.82
Smarca1Q6PGB8 Preb-209ENSMUST00000202567 1869 ntTSL 1 (best) BASIC26.45■■□□□ 1.82
Smarca1Q6PGB8 Ssbp4-205ENSMUST00000210369 1828 ntTSL 2 BASIC26.44■■□□□ 1.82
Smarca1Q6PGB8 Itpka-201ENSMUST00000028758 1818 ntAPPRIS P1 TSL 1 (best) BASIC26.44■■□□□ 1.82
Smarca1Q6PGB8 Sox3-201ENSMUST00000135107 2065 ntAPPRIS P1 BASIC26.43■■□□□ 1.82
Smarca1Q6PGB8 Ankrd60-202ENSMUST00000119453 1084 ntAPPRIS P2 TSL 2 BASIC26.43■■□□□ 1.82
Smarca1Q6PGB8 Rnf115-201ENSMUST00000029740 2209 ntAPPRIS P1 TSL 1 (best) BASIC26.43■■□□□ 1.82
Smarca1Q6PGB8 Frat2-201ENSMUST00000059231 2161 ntAPPRIS P1 BASIC26.43■■□□□ 1.82
Smarca1Q6PGB8 Stradb-202ENSMUST00000114296 1348 ntTSL 1 (best) BASIC26.42■■□□□ 1.82
Smarca1Q6PGB8 Tsg101-201ENSMUST00000014546 1949 ntAPPRIS P1 TSL 1 (best) BASIC26.42■■□□□ 1.82
Smarca1Q6PGB8 Nhlrc1-201ENSMUST00000052747 2294 ntAPPRIS P1 BASIC26.41■■□□□ 1.82
Smarca1Q6PGB8 Babam2-209ENSMUST00000201352 1888 ntAPPRIS P1 TSL 1 (best) BASIC26.41■■□□□ 1.82
Smarca1Q6PGB8 Iscu-203ENSMUST00000112312 1116 ntTSL 5 BASIC26.41■■□□□ 1.82
Smarca1Q6PGB8 5031425E22Rik-201ENSMUST00000101522 2110 ntBASIC26.41■■□□□ 1.82
Smarca1Q6PGB8 Gpr12-201ENSMUST00000036211 2219 ntAPPRIS P1 TSL 1 (best) BASIC26.4■■□□□ 1.82
Smarca1Q6PGB8 E2f5-202ENSMUST00000165922 1751 ntAPPRIS ALT2 TSL 5 BASIC26.4■■□□□ 1.82
Retrieved 100 of 76,532 protein–RNA pairs in 13.8 ms