Protein–RNA interactions for Protein: Q5R1I1

Trav7d-3, T cell receptor alpha variable 7-3 (Fragment), mousemouse

Predictions only

Length 112 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav7d-3Q5R1I1 Cacfd1-204ENSMUST00000114006 1648 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Trav7d-3Q5R1I1 Cpsf4-201ENSMUST00000070487 1606 ntTSL 1 (best) BASIC17.39■□□□□ 0.38
Trav7d-3Q5R1I1 1700016A09Rik-201ENSMUST00000192004 835 ntBASIC17.39■□□□□ 0.37
Trav7d-3Q5R1I1 Il3ra-201ENSMUST00000090591 1614 ntAPPRIS P2 TSL 1 (best) BASIC17.39■□□□□ 0.37
Trav7d-3Q5R1I1 March2-205ENSMUST00000173015 1418 ntTSL 3 BASIC17.38■□□□□ 0.37
Trav7d-3Q5R1I1 Pcf11-205ENSMUST00000208255 1720 ntBASIC17.38■□□□□ 0.37
Trav7d-3Q5R1I1 Cic-202ENSMUST00000163320 6096 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
Trav7d-3Q5R1I1 Cic-201ENSMUST00000005578 6099 ntTSL 5 BASIC17.38■□□□□ 0.37
Trav7d-3Q5R1I1 Smarcc1-201ENSMUST00000088716 5717 ntAPPRIS P2 TSL 1 (best) BASIC17.38■□□□□ 0.37
Trav7d-3Q5R1I1 Zfp131-205ENSMUST00000223812 663 ntBASIC17.37■□□□□ 0.37
Trav7d-3Q5R1I1 Twist1-201ENSMUST00000049089 1628 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Trav7d-3Q5R1I1 Dedd-201ENSMUST00000064950 1618 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Trav7d-3Q5R1I1 Fgf20-201ENSMUST00000034014 1476 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Trav7d-3Q5R1I1 Gm960-204ENSMUST00000225896 2202 ntAPPRIS ALT2 BASIC17.35■□□□□ 0.37
Trav7d-3Q5R1I1 Gm43863-201ENSMUST00000203822 1192 ntBASIC17.35■□□□□ 0.37
Trav7d-3Q5R1I1 Eid2-201ENSMUST00000059596 1392 ntAPPRIS P1 BASIC17.35■□□□□ 0.37
Trav7d-3Q5R1I1 Scrt2-201ENSMUST00000064061 3395 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
Trav7d-3Q5R1I1 Wdr34-201ENSMUST00000113711 1814 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Trav7d-3Q5R1I1 Adgrb1-203ENSMUST00000185682 2744 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
Trav7d-3Q5R1I1 Hoxc13-201ENSMUST00000001700 2461 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Trav7d-3Q5R1I1 Syndig1l-204ENSMUST00000222422 1758 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Trav7d-3Q5R1I1 Isoc1-201ENSMUST00000025503 2563 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Trav7d-3Q5R1I1 Yars2-201ENSMUST00000059955 1574 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Trav7d-3Q5R1I1 E2f5-202ENSMUST00000165922 1751 ntAPPRIS ALT2 TSL 5 BASIC17.33■□□□□ 0.37
Trav7d-3Q5R1I1 Neurl4-201ENSMUST00000061837 5188 ntAPPRIS P3 TSL 5 BASIC17.33■□□□□ 0.36
Trav7d-3Q5R1I1 Zcchc2-202ENSMUST00000119166 6368 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
Trav7d-3Q5R1I1 Ssbp4-205ENSMUST00000210369 1828 ntTSL 2 BASIC17.33■□□□□ 0.36
Trav7d-3Q5R1I1 Itpka-201ENSMUST00000028758 1818 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Trav7d-3Q5R1I1 Dazap1-202ENSMUST00000105361 1537 ntAPPRIS ALT1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Trav7d-3Q5R1I1 Ctdspl-201ENSMUST00000073109 4589 ntAPPRIS P2 TSL 1 (best) BASIC17.32■□□□□ 0.36
Trav7d-3Q5R1I1 BC037032-205ENSMUST00000187080 508 ntTSL 5 BASIC17.32■□□□□ 0.36
Trav7d-3Q5R1I1 AC157572.2-201ENSMUST00000226970 908 ntBASIC17.32■□□□□ 0.36
Trav7d-3Q5R1I1 Rcor2-201ENSMUST00000066646 2801 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Trav7d-3Q5R1I1 Fam3c-201ENSMUST00000081288 1487 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Trav7d-3Q5R1I1 Rcan1-202ENSMUST00000060005 2324 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Trav7d-3Q5R1I1 Bcl7b-201ENSMUST00000031692 1758 ntAPPRIS P2 TSL 1 (best) BASIC17.31■□□□□ 0.36
Trav7d-3Q5R1I1 Rab21-201ENSMUST00000020343 4602 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Trav7d-3Q5R1I1 Tm6sf1-201ENSMUST00000041890 2226 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Trav7d-3Q5R1I1 Zmynd12-201ENSMUST00000094819 1464 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Trav7d-3Q5R1I1 Kcna7-201ENSMUST00000107774 2182 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Trav7d-3Q5R1I1 Capns1-201ENSMUST00000001845 1600 ntAPPRIS P2 TSL 5 BASIC17.3■□□□□ 0.36
Trav7d-3Q5R1I1 Tdp2-203ENSMUST00000223804 1136 ntBASIC17.3■□□□□ 0.36
Trav7d-3Q5R1I1 Mnx1-201ENSMUST00000001608 2018 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
Trav7d-3Q5R1I1 Tsg101-201ENSMUST00000014546 1949 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Trav7d-3Q5R1I1 2310050C09Rik-201ENSMUST00000163439 1078 ntAPPRIS P1 TSL 2 BASIC17.29■□□□□ 0.36
Trav7d-3Q5R1I1 Agap3-201ENSMUST00000024123 3207 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Trav7d-3Q5R1I1 A530058N18Rik-204ENSMUST00000141209 709 ntTSL 5 BASIC17.28■□□□□ 0.36
Trav7d-3Q5R1I1 Efna3-201ENSMUST00000029673 2363 ntAPPRIS P2 TSL 1 (best) BASIC17.28■□□□□ 0.36
Trav7d-3Q5R1I1 Pon2-201ENSMUST00000057792 2409 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Trav7d-3Q5R1I1 Dleu2-206ENSMUST00000182537 318 ntTSL 2 BASIC17.27■□□□□ 0.36
Trav7d-3Q5R1I1 Pdss1-201ENSMUST00000053729 1642 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Trav7d-3Q5R1I1 Clptm1l-201ENSMUST00000022102 2340 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
Trav7d-3Q5R1I1 Mapk1-203ENSMUST00000115731 1747 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
Trav7d-3Q5R1I1 Rab40c-209ENSMUST00000179998 2456 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
Trav7d-3Q5R1I1 Msi2-202ENSMUST00000107908 695 ntTSL 5 BASIC17.25■□□□□ 0.35
Trav7d-3Q5R1I1 Gm24970-201ENSMUST00000175582 82 ntBASIC17.25■□□□□ 0.35
Trav7d-3Q5R1I1 1810026B05Rik-206ENSMUST00000187421 519 ntTSL 3 BASIC17.25■□□□□ 0.35
Trav7d-3Q5R1I1 Gm9397-201ENSMUST00000200125 605 ntBASIC17.25■□□□□ 0.35
Trav7d-3Q5R1I1 Stard10-203ENSMUST00000164479 1375 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Trav7d-3Q5R1I1 Dcbld2-201ENSMUST00000046663 6561 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Trav7d-3Q5R1I1 Kansl2-201ENSMUST00000023727 2311 ntAPPRIS ALT2 TSL 5 BASIC17.25■□□□□ 0.35
Trav7d-3Q5R1I1 Sys1-201ENSMUST00000072452 1606 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Trav7d-3Q5R1I1 Pm20d2-201ENSMUST00000098181 1445 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
Trav7d-3Q5R1I1 Tmem243-201ENSMUST00000115365 1040 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
Trav7d-3Q5R1I1 Stard3nl-210ENSMUST00000222869 1030 ntTSL 5 BASIC17.24■□□□□ 0.35
Trav7d-3Q5R1I1 Panx2-202ENSMUST00000161372 2314 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Trav7d-3Q5R1I1 Babam2-209ENSMUST00000201352 1888 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Trav7d-3Q5R1I1 Arhgdia-201ENSMUST00000067936 2150 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Trav7d-3Q5R1I1 Fus-201ENSMUST00000077609 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
Trav7d-3Q5R1I1 1700069B07Rik-202ENSMUST00000191155 939 ntBASIC17.22■□□□□ 0.35
Trav7d-3Q5R1I1 Tbc1d24-201ENSMUST00000024931 4894 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Trav7d-3Q5R1I1 C1galt1-201ENSMUST00000040159 6092 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Trav7d-3Q5R1I1 Clk2-202ENSMUST00000121212 2154 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
Trav7d-3Q5R1I1 Sox3-201ENSMUST00000135107 2065 ntAPPRIS P1 BASIC17.21■□□□□ 0.35
Trav7d-3Q5R1I1 Qrich1-209ENSMUST00000194385 975 ntTSL 2 BASIC17.21■□□□□ 0.35
Trav7d-3Q5R1I1 Gm26508-201ENSMUST00000181285 1516 ntTSL 5 BASIC17.21■□□□□ 0.34
Trav7d-3Q5R1I1 Basp1-201ENSMUST00000058845 1855 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Trav7d-3Q5R1I1 Nelfe-201ENSMUST00000097343 1607 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
Trav7d-3Q5R1I1 Fam149b-202ENSMUST00000051915 1981 ntAPPRIS ALT2 TSL 5 BASIC17.2■□□□□ 0.34
Trav7d-3Q5R1I1 Rnf149-201ENSMUST00000062525 2492 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Trav7d-3Q5R1I1 Taf4-201ENSMUST00000041618 4416 ntAPPRIS P2 TSL 1 (best) BASIC17.18■□□□□ 0.34
Trav7d-3Q5R1I1 Pate2-201ENSMUST00000098906 1690 ntAPPRIS ALT2 TSL 2 BASIC17.18■□□□□ 0.34
Trav7d-3Q5R1I1 1110008F13Rik-201ENSMUST00000029165 1045 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Trav7d-3Q5R1I1 P2rx2-205ENSMUST00000200037 1569 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
Trav7d-3Q5R1I1 Trim33-201ENSMUST00000029444 8875 ntAPPRIS P4 TSL 1 (best) BASIC17.18■□□□□ 0.34
Trav7d-3Q5R1I1 Ctbp1-211ENSMUST00000202868 2436 ntAPPRIS ALT1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Trav7d-3Q5R1I1 Frat2-201ENSMUST00000059231 2161 ntAPPRIS P1 BASIC17.18■□□□□ 0.34
Trav7d-3Q5R1I1 4930577N17Rik-201ENSMUST00000139771 1625 ntBASIC17.18■□□□□ 0.34
Trav7d-3Q5R1I1 B3gat1-201ENSMUST00000115269 1665 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
Trav7d-3Q5R1I1 Paqr3-202ENSMUST00000112968 1875 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
Trav7d-3Q5R1I1 Ube2i-206ENSMUST00000172618 1559 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Trav7d-3Q5R1I1 1810026B05Rik-202ENSMUST00000184554 782 ntTSL 3 BASIC17.17■□□□□ 0.34
Trav7d-3Q5R1I1 Gxylt1-202ENSMUST00000057896 1891 ntAPPRIS ALT2 TSL 5 BASIC17.17■□□□□ 0.34
Trav7d-3Q5R1I1 D730045B01Rik-202ENSMUST00000186838 1543 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
Trav7d-3Q5R1I1 Kras-201ENSMUST00000032399 4678 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Trav7d-3Q5R1I1 Gas7-203ENSMUST00000108681 1595 ntAPPRIS ALT2 TSL 5 BASIC17.16■□□□□ 0.34
Trav7d-3Q5R1I1 Arx-202ENSMUST00000113947 2454 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Trav7d-3Q5R1I1 St7-208ENSMUST00000115419 2194 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
Trav7d-3Q5R1I1 Zfp422-201ENSMUST00000057540 2375 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Trav7d-3Q5R1I1 Lmo2-203ENSMUST00000111143 1654 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
Retrieved 100 of 76,532 protein–RNA pairs in 14.1 ms