Protein–RNA interactions for Protein: P0C0A3

Chmp6, Charged multivesicular body protein 6, mousemouse

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chmp6P0C0A3 Ryk-201ENSMUST00000035142 2852 ntAPPRIS ALT2 TSL 1 (best) BASIC25.9■■□□□ 1.74
Chmp6P0C0A3 Slc35a3-202ENSMUST00000120120 1791 ntAPPRIS P1 TSL 1 (best) BASIC25.88■■□□□ 1.73
Chmp6P0C0A3 Hdgf-201ENSMUST00000005017 2245 ntAPPRIS P1 TSL 1 (best) BASIC25.88■■□□□ 1.73
Chmp6P0C0A3 Cops6-202ENSMUST00000110951 1098 ntAPPRIS ALT2 TSL 1 (best) BASIC25.87■■□□□ 1.73
Chmp6P0C0A3 Ppp4c-211ENSMUST00000206570 1400 ntAPPRIS P1 TSL 1 (best) BASIC25.87■■□□□ 1.73
Chmp6P0C0A3 Gsk3a-202ENSMUST00000108411 2248 ntAPPRIS ALT2 TSL 5 BASIC25.87■■□□□ 1.73
Chmp6P0C0A3 Fam3c-201ENSMUST00000081288 1487 ntTSL 1 (best) BASIC25.86■■□□□ 1.73
Chmp6P0C0A3 Uncx-201ENSMUST00000172997 2498 ntAPPRIS P1 TSL 1 (best) BASIC25.86■■□□□ 1.73
Chmp6P0C0A3 Gpr27-201ENSMUST00000101122 2388 ntAPPRIS P1 BASIC25.85■■□□□ 1.73
Chmp6P0C0A3 Pdss1-201ENSMUST00000053729 1642 ntAPPRIS P1 TSL 1 (best) BASIC25.85■■□□□ 1.73
Chmp6P0C0A3 E2f5-202ENSMUST00000165922 1751 ntAPPRIS ALT2 TSL 5 BASIC25.84■■□□□ 1.73
Chmp6P0C0A3 2410017I17Rik-202ENSMUST00000090537 2053 ntTSL 2 BASIC25.84■■□□□ 1.73
Chmp6P0C0A3 Fezf2-202ENSMUST00000224023 1917 ntBASIC25.84■■□□□ 1.73
Chmp6P0C0A3 Gm6821-201ENSMUST00000107540 542 ntBASIC25.83■■□□□ 1.73
Chmp6P0C0A3 Gm31266-201ENSMUST00000192060 656 ntTSL 5 BASIC25.83■■□□□ 1.73
Chmp6P0C0A3 Lmo2-202ENSMUST00000111140 1706 ntTSL 1 (best) BASIC25.83■■□□□ 1.72
Chmp6P0C0A3 Gm9887-201ENSMUST00000053451 624 ntAPPRIS P1 BASIC25.82■■□□□ 1.72
Chmp6P0C0A3 AY074887-201ENSMUST00000054018 769 ntAPPRIS P1 BASIC25.82■■□□□ 1.72
Chmp6P0C0A3 Maz-201ENSMUST00000032916 2347 ntTSL 1 (best) BASIC25.82■■□□□ 1.72
Chmp6P0C0A3 Caap1-201ENSMUST00000030313 2107 ntAPPRIS P1 TSL 1 (best) BASIC25.82■■□□□ 1.72
Chmp6P0C0A3 Endog-201ENSMUST00000015481 1063 ntAPPRIS P1 TSL 1 (best) BASIC25.81■■□□□ 1.72
Chmp6P0C0A3 E030037K01Rik-201ENSMUST00000180928 1756 ntBASIC25.81■■□□□ 1.72
Chmp6P0C0A3 Bin1-202ENSMUST00000091967 2118 ntAPPRIS ALT2 TSL 1 (best) BASIC25.81■■□□□ 1.72
Chmp6P0C0A3 Mpp6-202ENSMUST00000036236 2161 ntAPPRIS P1 TSL 1 (best) BASIC25.78■■□□□ 1.72
Chmp6P0C0A3 Gna13-202ENSMUST00000106702 914 ntTSL 1 (best) BASIC25.78■■□□□ 1.72
Chmp6P0C0A3 Bod1-202ENSMUST00000109415 799 ntAPPRIS P1 TSL 2 BASIC25.78■■□□□ 1.72
Chmp6P0C0A3 Igfbp3-202ENSMUST00000135887 1709 ntAPPRIS P1 TSL 1 (best) BASIC25.77■■□□□ 1.72
Chmp6P0C0A3 Nkain2-201ENSMUST00000092602 558 ntBASIC25.77■■□□□ 1.72
Chmp6P0C0A3 Klhl25-205ENSMUST00000206019 2299 ntAPPRIS P1 TSL 1 (best) BASIC25.77■■□□□ 1.72
Chmp6P0C0A3 Gas7-203ENSMUST00000108681 1595 ntAPPRIS ALT2 TSL 5 BASIC25.77■■□□□ 1.72
Chmp6P0C0A3 Sys1-201ENSMUST00000072452 1606 ntAPPRIS P1 TSL 1 (best) BASIC25.77■■□□□ 1.72
Chmp6P0C0A3 Rab40c-209ENSMUST00000179998 2456 ntAPPRIS P1 TSL 5 BASIC25.76■■□□□ 1.71
Chmp6P0C0A3 Adgrb1-203ENSMUST00000185682 2744 ntTSL 1 (best) BASIC25.75■■□□□ 1.71
Chmp6P0C0A3 Zxdc-201ENSMUST00000045740 1612 ntAPPRIS ALT2 TSL 1 (best) BASIC25.74■■□□□ 1.71
Chmp6P0C0A3 Gm42809-201ENSMUST00000198429 1138 ntBASIC25.74■■□□□ 1.71
Chmp6P0C0A3 Tceal5-201ENSMUST00000066819 1044 ntAPPRIS P1 TSL 1 (best) BASIC25.74■■□□□ 1.71
Chmp6P0C0A3 Rgs7-206ENSMUST00000194555 2431 ntAPPRIS ALT2 TSL 1 (best) BASIC25.74■■□□□ 1.71
Chmp6P0C0A3 Gm20402-201ENSMUST00000174738 687 ntTSL 3 BASIC25.73■■□□□ 1.71
Chmp6P0C0A3 Bcl7c-207ENSMUST00000207019 654 ntTSL 3 BASIC25.73■■□□□ 1.71
Chmp6P0C0A3 Dnajb2-202ENSMUST00000082158 1253 ntAPPRIS P1 TSL 5 BASIC25.73■■□□□ 1.71
Chmp6P0C0A3 Serpinb6a-201ENSMUST00000017188 1504 ntTSL 1 (best) BASIC25.73■■□□□ 1.71
Chmp6P0C0A3 Nr2f6-201ENSMUST00000002466 2218 ntAPPRIS P1 TSL 1 (best) BASIC25.72■■□□□ 1.71
Chmp6P0C0A3 Sh3rf1-201ENSMUST00000034060 5479 ntAPPRIS P1 TSL 1 (best) BASIC25.72■■□□□ 1.71
Chmp6P0C0A3 Ccdc50-202ENSMUST00000096127 1096 ntTSL 1 (best) BASIC25.72■■□□□ 1.71
Chmp6P0C0A3 Rcor2-201ENSMUST00000066646 2801 ntAPPRIS P1 TSL 1 (best) BASIC25.71■■□□□ 1.71
Chmp6P0C0A3 Pcf11-205ENSMUST00000208255 1720 ntBASIC25.69■■□□□ 1.7
Chmp6P0C0A3 Kansl2-201ENSMUST00000023727 2311 ntAPPRIS ALT2 TSL 5 BASIC25.69■■□□□ 1.7
Chmp6P0C0A3 Grb2-202ENSMUST00000106495 2041 ntTSL 5 BASIC25.68■■□□□ 1.7
Chmp6P0C0A3 Marveld2-202ENSMUST00000163163 2187 ntTSL 1 (best) BASIC25.66■■□□□ 1.7
Chmp6P0C0A3 Rundc3a-203ENSMUST00000107103 1822 ntTSL 5 BASIC25.66■■□□□ 1.7
Chmp6P0C0A3 Irak1-207ENSMUST00000114360 2441 ntAPPRIS ALT2 TSL 1 (best) BASIC25.66■■□□□ 1.7
Chmp6P0C0A3 Gm960-204ENSMUST00000225896 2202 ntAPPRIS ALT2 BASIC25.65■■□□□ 1.7
Chmp6P0C0A3 Gm8503-201ENSMUST00000118131 455 ntBASIC25.65■■□□□ 1.7
Chmp6P0C0A3 AC163623.1-201ENSMUST00000213738 727 ntAPPRIS P1 TSL 3 BASIC25.65■■□□□ 1.7
Chmp6P0C0A3 St7-202ENSMUST00000052113 2046 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.7
Chmp6P0C0A3 Lrfn1-203ENSMUST00000189877 1852 ntAPPRIS P3 TSL 5 BASIC25.64■■□□□ 1.7
Chmp6P0C0A3 Jag2-201ENSMUST00000075827 5106 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.7
Chmp6P0C0A3 Ankrd60-202ENSMUST00000119453 1084 ntAPPRIS P2 TSL 2 BASIC25.64■■□□□ 1.7
Chmp6P0C0A3 4930542C12Rik-201ENSMUST00000171096 1203 ntBASIC25.64■■□□□ 1.7
Chmp6P0C0A3 AC117232.3-201ENSMUST00000217817 338 ntTSL 2 BASIC25.64■■□□□ 1.7
Chmp6P0C0A3 Smurf1-202ENSMUST00000100461 2725 ntAPPRIS ALT1 TSL 1 (best) BASIC25.64■■□□□ 1.69
Chmp6P0C0A3 1810049J17Rik-201ENSMUST00000180521 462 ntAPPRIS P1 BASIC25.62■■□□□ 1.69
Chmp6P0C0A3 Aspscr1-202ENSMUST00000103016 1689 ntTSL 5 BASIC25.61■■□□□ 1.69
Chmp6P0C0A3 Gm11529-201ENSMUST00000153012 639 ntTSL 1 (best) BASIC25.61■■□□□ 1.69
Chmp6P0C0A3 Gm29254-202ENSMUST00000189302 883 ntTSL 1 (best) BASIC25.61■■□□□ 1.69
Chmp6P0C0A3 Gskip-202ENSMUST00000222284 1064 ntTSL 1 (best) BASIC25.61■■□□□ 1.69
Chmp6P0C0A3 Ubp1-203ENSMUST00000116492 2111 ntAPPRIS ALT1 TSL 1 (best) BASIC25.61■■□□□ 1.69
Chmp6P0C0A3 Naa20-201ENSMUST00000002805 1172 ntTSL 1 (best) BASIC25.6■■□□□ 1.69
Chmp6P0C0A3 Iscu-203ENSMUST00000112312 1116 ntTSL 5 BASIC25.59■■□□□ 1.69
Chmp6P0C0A3 Dennd5a-202ENSMUST00000106722 4862 ntTSL 1 (best) BASIC25.57■■□□□ 1.68
Chmp6P0C0A3 Arhgdia-201ENSMUST00000067936 2150 ntAPPRIS P1 TSL 1 (best) BASIC25.57■■□□□ 1.68
Chmp6P0C0A3 Glrx2-205ENSMUST00000145571 758 ntTSL 2 BASIC25.57■■□□□ 1.68
Chmp6P0C0A3 Eed-201ENSMUST00000107234 2067 ntAPPRIS P1 TSL 1 (best) BASIC25.57■■□□□ 1.68
Chmp6P0C0A3 Acvr2b-202ENSMUST00000165044 2093 ntTSL 2 BASIC25.56■■□□□ 1.68
Chmp6P0C0A3 Lmo4-201ENSMUST00000120539 1669 ntAPPRIS P1 TSL 1 (best) BASIC25.56■■□□□ 1.68
Chmp6P0C0A3 Gm30023-201ENSMUST00000197970 889 ntBASIC25.56■■□□□ 1.68
Chmp6P0C0A3 Clk2-202ENSMUST00000121212 2154 ntAPPRIS P3 TSL 1 (best) BASIC25.56■■□□□ 1.68
Chmp6P0C0A3 Rbmxl2-201ENSMUST00000098135 1472 ntAPPRIS P1 BASIC25.54■■□□□ 1.68
Chmp6P0C0A3 Kcna7-201ENSMUST00000107774 2182 ntAPPRIS P1 TSL 1 (best) BASIC25.54■■□□□ 1.68
Chmp6P0C0A3 B230208H11Rik-201ENSMUST00000180529 1112 ntTSL 1 (best) BASIC25.54■■□□□ 1.68
Chmp6P0C0A3 Babam2-209ENSMUST00000201352 1888 ntAPPRIS P1 TSL 1 (best) BASIC25.53■■□□□ 1.68
Chmp6P0C0A3 Det1-201ENSMUST00000032839 2269 ntAPPRIS P1 TSL 1 (best) BASIC25.53■■□□□ 1.68
Chmp6P0C0A3 Mapkap1-201ENSMUST00000113123 1530 ntTSL 5 BASIC25.53■■□□□ 1.68
Chmp6P0C0A3 Neurog2-201ENSMUST00000029587 2227 ntAPPRIS P1 TSL 1 (best) BASIC25.52■■□□□ 1.68
Chmp6P0C0A3 Gm28052-201ENSMUST00000150388 380 ntTSL 3 BASIC25.52■■□□□ 1.68
Chmp6P0C0A3 Basp1-201ENSMUST00000058845 1855 ntAPPRIS P1 TSL 1 (best) BASIC25.51■■□□□ 1.67
Chmp6P0C0A3 Dtnb-203ENSMUST00000164578 2355 ntTSL 1 (best) BASIC25.51■■□□□ 1.67
Chmp6P0C0A3 Smarcad1-211ENSMUST00000204696 734 ntTSL 1 (best) BASIC25.51■■□□□ 1.67
Chmp6P0C0A3 Wt1-209ENSMUST00000213301 1554 ntAPPRIS P2 TSL 1 (best) BASIC25.51■■□□□ 1.67
Chmp6P0C0A3 Kras-207ENSMUST00000203147 817 ntTSL 5 BASIC25.5■■□□□ 1.67
Chmp6P0C0A3 Panx2-202ENSMUST00000161372 2314 ntTSL 1 (best) BASIC25.49■■□□□ 1.67
Chmp6P0C0A3 Phlda3-201ENSMUST00000038945 1435 ntAPPRIS P1 TSL 1 (best) BASIC25.49■■□□□ 1.67
Chmp6P0C0A3 Pm20d2-202ENSMUST00000119167 1339 ntTSL 1 (best) BASIC25.49■■□□□ 1.67
Chmp6P0C0A3 Zfp513-202ENSMUST00000114590 2228 ntAPPRIS P1 TSL 1 (best) BASIC25.48■■□□□ 1.67
Chmp6P0C0A3 Hmx3-201ENSMUST00000046093 1457 ntAPPRIS P1 TSL 1 (best) BASIC25.48■■□□□ 1.67
Chmp6P0C0A3 Rcan1-202ENSMUST00000060005 2324 ntTSL 1 (best) BASIC25.48■■□□□ 1.67
Chmp6P0C0A3 Lmo2-203ENSMUST00000111143 1654 ntTSL 1 (best) BASIC25.47■■□□□ 1.67
Chmp6P0C0A3 Klhl35-201ENSMUST00000037359 1954 ntAPPRIS P1 TSL 1 (best) BASIC25.47■■□□□ 1.67
Chmp6P0C0A3 Ube2e2-205ENSMUST00000150727 1523 ntAPPRIS P1 TSL 1 (best) BASIC25.47■■□□□ 1.67
Chmp6P0C0A3 Arf6-201ENSMUST00000050063 1534 ntAPPRIS P1 TSL 1 (best) BASIC25.47■■□□□ 1.67
Retrieved 100 of 76,532 protein–RNA pairs in 10.9 ms