Protein–RNA interactions for Protein: A0A0B4J1G9

Trbv5, T cell receptor beta, variable 5 (Fragment), mousemouse

Predictions only

Length 113 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trbv5A0A0B4J1G9 Gm38287-201ENSMUST00000195193 2051 ntTSL 3 BASIC19.13■□□□□ 0.65
Trbv5A0A0B4J1G9 Hexdc-201ENSMUST00000038831 2378 ntAPPRIS ALT2 TSL 5 BASIC19.13■□□□□ 0.65
Trbv5A0A0B4J1G9 Tsg101-201ENSMUST00000014546 1949 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Trbv5A0A0B4J1G9 2610307P16Rik-205ENSMUST00000148885 1870 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
Trbv5A0A0B4J1G9 Mapk1-203ENSMUST00000115731 1747 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Trbv5A0A0B4J1G9 Popdc3-201ENSMUST00000019994 1853 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Trbv5A0A0B4J1G9 Pan3-209ENSMUST00000176600 5541 ntAPPRIS ALT2 TSL 5 BASIC19.11■□□□□ 0.65
Trbv5A0A0B4J1G9 Tspan33-201ENSMUST00000046750 1994 ntAPPRIS P3 TSL 1 (best) BASIC19.11■□□□□ 0.65
Trbv5A0A0B4J1G9 Emid1-201ENSMUST00000062821 1947 ntAPPRIS P2 TSL 1 (best) BASIC19.11■□□□□ 0.65
Trbv5A0A0B4J1G9 Il17rd-202ENSMUST00000223942 2186 ntBASIC19.1■□□□□ 0.65
Trbv5A0A0B4J1G9 Ctdspl-201ENSMUST00000073109 4589 ntAPPRIS P2 TSL 1 (best) BASIC19.1■□□□□ 0.65
Trbv5A0A0B4J1G9 Ran-202ENSMUST00000111343 2423 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Trbv5A0A0B4J1G9 Slc35a3-202ENSMUST00000120120 1791 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Trbv5A0A0B4J1G9 Hdac2-201ENSMUST00000019911 2005 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Trbv5A0A0B4J1G9 Fam204a-201ENSMUST00000065286 2035 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Trbv5A0A0B4J1G9 St6galnac6-203ENSMUST00000095044 2394 ntAPPRIS P3 TSL 1 (best) BASIC19.1■□□□□ 0.65
Trbv5A0A0B4J1G9 Bok-201ENSMUST00000027499 1468 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Trbv5A0A0B4J1G9 Sox1-201ENSMUST00000180353 4832 ntAPPRIS P1 BASIC19.09■□□□□ 0.65
Trbv5A0A0B4J1G9 Tgfbrap1-202ENSMUST00000186694 5385 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Trbv5A0A0B4J1G9 Slc16a11-201ENSMUST00000094055 1788 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Trbv5A0A0B4J1G9 Kcnc3-202ENSMUST00000107907 5281 ntAPPRIS P2 TSL 5 BASIC19.09■□□□□ 0.65
Trbv5A0A0B4J1G9 Rmnd5a-201ENSMUST00000002292 6165 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
Trbv5A0A0B4J1G9 Fam212b-202ENSMUST00000098273 1868 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.65
Trbv5A0A0B4J1G9 Pan3-201ENSMUST00000031651 5048 ntAPPRIS P2 TSL 5 BASIC19.08■□□□□ 0.64
Trbv5A0A0B4J1G9 Efhd2-201ENSMUST00000036854 2381 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Trbv5A0A0B4J1G9 Usp48-205ENSMUST00000105840 5741 ntAPPRIS P1 TSL 5 BASIC19.07■□□□□ 0.64
Trbv5A0A0B4J1G9 Iars2-202ENSMUST00000110974 2431 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
Trbv5A0A0B4J1G9 Kcnmb4os2-201ENSMUST00000080943 1571 ntTSL 5 BASIC19.06■□□□□ 0.64
Trbv5A0A0B4J1G9 Fam120aos-201ENSMUST00000180775 1780 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
Trbv5A0A0B4J1G9 Ranbp1-202ENSMUST00000115645 1085 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Trbv5A0A0B4J1G9 Nkx1-1-201ENSMUST00000173348 1209 ntAPPRIS P1 TSL 5 BASIC19.06■□□□□ 0.64
Trbv5A0A0B4J1G9 Bok-205ENSMUST00000201863 883 ntAPPRIS P1 TSL 5 BASIC19.06■□□□□ 0.64
Trbv5A0A0B4J1G9 Pdgfb-201ENSMUST00000000500 2918 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Trbv5A0A0B4J1G9 Pcf11-205ENSMUST00000208255 1720 ntBASIC19.05■□□□□ 0.64
Trbv5A0A0B4J1G9 Pitpna-205ENSMUST00000179445 1665 ntAPPRIS ALT1 TSL 5 BASIC19.05■□□□□ 0.64
Trbv5A0A0B4J1G9 Ppp1cc-202ENSMUST00000102528 2384 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Trbv5A0A0B4J1G9 Rab22a-202ENSMUST00000109110 849 ntTSL 5 BASIC19.05■□□□□ 0.64
Trbv5A0A0B4J1G9 Hoxd9-201ENSMUST00000059272 2136 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Trbv5A0A0B4J1G9 St7-205ENSMUST00000081635 2115 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
Trbv5A0A0B4J1G9 Taf4-201ENSMUST00000041618 4416 ntAPPRIS P2 TSL 1 (best) BASIC19.05■□□□□ 0.64
Trbv5A0A0B4J1G9 Mcat-201ENSMUST00000061882 1893 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Trbv5A0A0B4J1G9 Elf2-203ENSMUST00000108051 2514 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
Trbv5A0A0B4J1G9 Plvap-201ENSMUST00000048452 1987 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Trbv5A0A0B4J1G9 Actr3b-202ENSMUST00000128727 2031 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
Trbv5A0A0B4J1G9 Gm12184-201ENSMUST00000104959 1310 ntAPPRIS P1 BASIC19.02■□□□□ 0.64
Trbv5A0A0B4J1G9 Sh3d21-202ENSMUST00000097891 2384 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
Trbv5A0A0B4J1G9 Tfeb-202ENSMUST00000086932 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.64
Trbv5A0A0B4J1G9 Epop-201ENSMUST00000052281 2314 ntAPPRIS P1 BASIC19.01■□□□□ 0.63
Trbv5A0A0B4J1G9 Gm11613-201ENSMUST00000134427 1971 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
Trbv5A0A0B4J1G9 Efna2-201ENSMUST00000003154 2131 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Trbv5A0A0B4J1G9 Kansl1l-202ENSMUST00000113987 2342 ntTSL 1 (best) BASIC19■□□□□ 0.63
Trbv5A0A0B4J1G9 Artn-201ENSMUST00000070816 2177 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Trbv5A0A0B4J1G9 Slc16a8-201ENSMUST00000039752 1806 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Trbv5A0A0B4J1G9 Abhd17b-201ENSMUST00000052556 2475 ntAPPRIS P1 TSL 5 BASIC18.99■□□□□ 0.63
Trbv5A0A0B4J1G9 P3h3-201ENSMUST00000023958 2850 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Trbv5A0A0B4J1G9 Kif1bp-206ENSMUST00000162525 2311 ntTSL 5 BASIC18.99■□□□□ 0.63
Trbv5A0A0B4J1G9 Vdac1-202ENSMUST00000102758 2022 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Trbv5A0A0B4J1G9 Gm27322-201ENSMUST00000184007 104 ntBASIC18.98■□□□□ 0.63
Trbv5A0A0B4J1G9 Dusp5-201ENSMUST00000038287 2473 ntAPPRIS P1 TSL 5 BASIC18.98■□□□□ 0.63
Trbv5A0A0B4J1G9 Egr4-201ENSMUST00000095759 2148 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Trbv5A0A0B4J1G9 Ube2f-202ENSMUST00000171112 1547 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Trbv5A0A0B4J1G9 Elf2-204ENSMUST00000108053 2611 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
Trbv5A0A0B4J1G9 Gm17641-201ENSMUST00000166328 2350 ntBASIC18.96■□□□□ 0.63
Trbv5A0A0B4J1G9 Rnf19b-206ENSMUST00000168461 2532 ntAPPRIS P2 TSL 5 BASIC18.96■□□□□ 0.63
Trbv5A0A0B4J1G9 Irak1-202ENSMUST00000068286 2537 ntAPPRIS P3 TSL 1 (best) BASIC18.96■□□□□ 0.63
Trbv5A0A0B4J1G9 Mbd2-202ENSMUST00000114946 1290 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
Trbv5A0A0B4J1G9 Mapk3-201ENSMUST00000050201 1267 ntAPPRIS ALT2 TSL 3 BASIC18.96■□□□□ 0.63
Trbv5A0A0B4J1G9 Clec2l-201ENSMUST00000114874 1428 ntAPPRIS P1 TSL 2 BASIC18.96■□□□□ 0.63
Trbv5A0A0B4J1G9 Fkbp8-202ENSMUST00000119353 1720 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
Trbv5A0A0B4J1G9 Cacfd1-204ENSMUST00000114006 1648 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Trbv5A0A0B4J1G9 Kcmf1-204ENSMUST00000204598 1743 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
Trbv5A0A0B4J1G9 Svbp-202ENSMUST00000097908 832 ntTSL 2 BASIC18.95■□□□□ 0.62
Trbv5A0A0B4J1G9 B3gat1-201ENSMUST00000115269 1665 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
Trbv5A0A0B4J1G9 Fam181b-201ENSMUST00000051179 2003 ntAPPRIS P1 BASIC18.94■□□□□ 0.62
Trbv5A0A0B4J1G9 Adra1d-201ENSMUST00000103184 1899 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Trbv5A0A0B4J1G9 Slc25a33-201ENSMUST00000105686 1887 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Trbv5A0A0B4J1G9 Lrrc75a-201ENSMUST00000057194 1984 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Trbv5A0A0B4J1G9 Gm5601-202ENSMUST00000207161 1437 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
Trbv5A0A0B4J1G9 Ppp1cc-201ENSMUST00000086294 1442 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
Trbv5A0A0B4J1G9 Phf2-201ENSMUST00000035540 5494 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Trbv5A0A0B4J1G9 D030046N08Rik-201ENSMUST00000162318 1570 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
Trbv5A0A0B4J1G9 Mef2a-203ENSMUST00000076325 2664 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Trbv5A0A0B4J1G9 Phlpp1-201ENSMUST00000061047 6226 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Trbv5A0A0B4J1G9 Triobp-206ENSMUST00000130663 1660 ntAPPRIS ALT2 TSL 5 BASIC18.92■□□□□ 0.62
Trbv5A0A0B4J1G9 Homer3-206ENSMUST00000140212 2608 ntAPPRIS P3 TSL 1 (best) BASIC18.91■□□□□ 0.62
Trbv5A0A0B4J1G9 Spats2-201ENSMUST00000063517 3065 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Trbv5A0A0B4J1G9 Evl-201ENSMUST00000021689 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
Trbv5A0A0B4J1G9 Otud5-204ENSMUST00000115667 2708 ntAPPRIS ALT2 TSL 5 BASIC18.9■□□□□ 0.62
Trbv5A0A0B4J1G9 Btf3-201ENSMUST00000022163 1091 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
Trbv5A0A0B4J1G9 Ddx43-201ENSMUST00000113367 2207 ntAPPRIS P1 TSL 5 BASIC18.9■□□□□ 0.62
Trbv5A0A0B4J1G9 E330040D14Rik-201ENSMUST00000192299 1374 ntBASIC18.9■□□□□ 0.62
Trbv5A0A0B4J1G9 Gm17082-201ENSMUST00000166043 1091 ntBASIC18.89■□□□□ 0.61
Trbv5A0A0B4J1G9 B430219N15Rik-202ENSMUST00000180853 1105 ntBASIC18.89■□□□□ 0.61
Trbv5A0A0B4J1G9 Cln6-201ENSMUST00000034776 2142 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Trbv5A0A0B4J1G9 Ccna1-202ENSMUST00000197238 1719 ntAPPRIS P1 TSL 5 BASIC18.88■□□□□ 0.61
Trbv5A0A0B4J1G9 Hsd17b11-201ENSMUST00000031251 1825 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Trbv5A0A0B4J1G9 Ihh-201ENSMUST00000164097 2468 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Trbv5A0A0B4J1G9 Tbcel-204ENSMUST00000128959 1535 ntAPPRIS P1 TSL 5 BASIC18.87■□□□□ 0.61
Trbv5A0A0B4J1G9 Tcte2-204ENSMUST00000130033 1462 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
Trbv5A0A0B4J1G9 Wt1-209ENSMUST00000213301 1554 ntAPPRIS P2 TSL 1 (best) BASIC18.87■□□□□ 0.61
Retrieved 100 of 76,532 protein–RNA pairs in 31.1 ms